BAC Information

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BAC

Clone NameB6Ng01-245A17
Chromosome2 (Build37)
Map Location 68,383,348 - 68,502,059
singlet/doubletdoublet
Overlap geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik
Upstream geneLOC621171, LOC227995, B3galt1, Stk39
Downstream geneLOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245A17.bB6Ng01-245A17.g
ACCGA054031GA054032
length1,0321,137
definitionB6Ng01-245A17.b B6Ng01-245A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,383,348 - 68,384,369)(68,500,922 - 68,502,059)
sequence
gaattcagtaaggtttgattgcttgaaacaccaatgataaatctggttac
tgaggtacaactgcttttctgtgtgtaagcccattgagcaaggggtttgt
tgggcccctaggaaagaaaaggaaaatggactgttgatcacagcatggtc
ctgttcgcctaatgctttgtaattcacaaatgcatttcataggctttccc
ctctgtcctacttctgaacggagacttggtagtattataaaatcttcttt
ggagaaggaaatgccagtcataacaacaaagtacacagcaactgtcccgc
acagtctgtcatatgtctcactgttatcaaactatttaaattctcttatt
tatcccacaaatatactttgagtattaggtgctggagagacattggtgag
agaaaaaagatgtttatattctcatggatcatagtctattaaaggtaaat
gttcctaattaaataataaatcaatattaatttagaagtaaggtcagtgc
cctcaaggcaaagggcatagctttatgaaagagatatttggtctagtcat
tgaggaaatgtccagtgaattgaaaataggaactgagcaggattcaagca
tcctccctgggcctcccttacttcttagcttctttggatctgtggattgt
agcatgtttatcctgtactttatggctaatgtctatttataagtgagtac
acaccatgtgtgtatttctggatctgagttacctcactcaggatgatact
ttctagttccaaccatttgcctgaaaatttcatgatgtctttgtttttaa
tagctgaggagtattccattgtgtagatgtaccacattttttttatccat
tcttcagttgacagacatctaggttgtttccacttcatgactatggtgct
atgaacatagataagcaagtgttcttgtgtttgaacctccactcagaaga
gaaataaaatagacatcagaaggcagatggagggaagaaactggggtggg
gagaaagaaggtgaagaaggatgaattgggat
gaattcttaggtaagcttaaaggtaggatcttttcagagttgggcaagtc
taatgaacatcacttaggaaaatgcaaaaacagcacgctggacatgctga
gtggtaaagagcggtgtgatttcactcttaacaatccttttgactctata
ataaatttgatatttaagaattatagggagaattgaaatgatctgactcc
tgaaaactagcattccattctgcttctcaaagcctgcagctactgggtga
gctttgagattaaatataattgcagagaatctttctgaaagacattttct
taggcttcttcaccaagaattctaaatttaacctacatctccctcttttt
atgtagagagcaattcattttcagcaatttatcactacaattatagtctt
attttattcatttatttacactcacacacacacactgcagcattcatctc
tatttagaagtgcacgtatatcatacaatcataaatatagatctatttga
taacacagagtattagtatcctggttccaataggtgcctacatttttatc
atttgttattatctatctctttgcaacttctatgttcccttcaaactagg
tagaaacaaatcaatatttatccttgtcatgtctatcaaagtactaagca
gtaagacactgtataactttgataacgactgacagtatggttggtagagt
agtagcttattttatccaaggataaatctggagtcttaaagctactgagt
atggccagcatatcatgatgcctgagaggaaaagaaaaaatgagggtaaa
aacaaacaaacaaaaaggaacatctggctctattgattcactttctccat
cacagcccaattttccagagaataagagctttttcagaaagtaccaagag
gtgggaatcaatgatcccaggggatatgatttagattcattatttaaaaa
attattatttgatcatctcacatattgtattttgatcatattcatttctc
atcttctatatttttccaggtctactcccttcactggctactcactcttt
tgttctccccaaaaaaactttatcatactaattgtgaaccgacatttctt
tgggtgtgttggcttcatatcaccttctcacttacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68383348_68384369
seq2: B6Ng01-245A17.b_47_1078

seq1  GAATTCAGTAAGGTTTGATTGCTTGAAACACCAATGATAAATCTGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGGTTTGATTGCTTGAAACACCAATGATAAATCTGGTTAC  50

seq1  TGAGGTACAACTGCTTTTCTGTGTGTAAGCCCATTGAGCAAGGGGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACAACTGCTTTTCTGTGTGTAAGCCCATTGAGCAAGGGGTTTGT  100

seq1  TGGGCCCCTAGGAAAGAAAAGGAAAATGGACTGTTGATCACAGCATGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCTAGGAAAGAAAAGGAAAATGGACTGTTGATCACAGCATGGTC  150

seq1  CTGTTCGCCTAATGCTTTGTAATTCACAAATGCATTTCATAGGCTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCGCCTAATGCTTTGTAATTCACAAATGCATTTCATAGGCTTTCCC  200

seq1  CTCTGTCCTACTTCTGAACGGAGACTTGGTAGTATTATAAAATCTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTACTTCTGAACGGAGACTTGGTAGTATTATAAAATCTTCTTT  250

seq1  GGAGAAGGAAATGCCAGTCATAACAACAAAGTACACAGCAACTGTCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGAAATGCCAGTCATAACAACAAAGTACACAGCAACTGTCCCGC  300

seq1  ACAGTCTGTCATATGTCTCACTGTTATCAAACTATTTAAATTCTCTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGTCATATGTCTCACTGTTATCAAACTATTTAAATTCTCTTATT  350

seq1  TATCCCACAAATATACTTTGAGTATTAGGTGCTGGAGAGACATTGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCACAAATATACTTTGAGTATTAGGTGCTGGAGAGACATTGGTGAG  400

seq1  AGAAAAAAGATGTTTATATTCTCATGGATCATAGTCTATTAAAGGTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGATGTTTATATTCTCATGGATCATAGTCTATTAAAGGTAAAT  450

seq1  GTTCCTAATTAAATAATAAATCAATATTAATTTAGAAGTAAGGTCAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAATTAAATAATAAATCAATATTAATTTAGAAGTAAGGTCAGTGC  500

seq1  CCTCAAGGCAAAGGGCATAGCTTTATGAAAGAGATATTTGGTCTAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGCAAAGGGCATAGCTTTATGAAAGAGATATTTGGTCTAGTCAT  550

seq1  TGAGGAAATGTCCAGTGAATTGAAAATAGGAACTGAGCAGGATTCAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAATGTCCAGTGAATTGAAAATAGGAACTGAGCAGGATTCAAGCA  600

seq1  TCCTCCCTGGGCCTCCCTTACTTCTTAGCTTCTTTGGATCTGTGGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGGGCCTCCCTTACTTCTTAGCTTCTTTGGATCTGTGGATTGT  650

seq1  AGCATGTTTATCCTGTACTTTATGGCTAATGTCTATTTATAAGTGAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTTATCCTGTACTTTATGGCTAATGTCTATTTATAAGTGAGTAC  700

seq1  ACACCATGTGTGTATTTCTGGATCTGAGTTACCTCACTCAGGATGATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGTGTGTATTTCTGGATCTGAGTTACCTCACTCAGGATGATACT  750

seq1  TTCTAGTTCCAACCATTTGCCTGAAAATTTCATGATGTCTTTGTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCCAACCATTTGCCTGAAAATTTCATGATGTCTTTGTTTTTAA  800

seq1  TAGCTGAGGAGTATTCCATTGTGTAGATGTACCACA--TTTTTTATCCAT  848
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  TAGCTGAGGAGTATTCCATTGTGTAGATGTACCACATTTTTTTTATCCAT  850

seq1  TCTTCAGTTGACAGACATCTAGGTTGTTTCCACTTCATGACTATGGTGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTTGACAGACATCTAGGTTGTTTCCACTTCATGACTATGGTGCT  900

seq1  ATGAACATAGATAAGCAAGTGTTCTTGTGTTTGAACCT-CACTCAGAAGA  947
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGAACATAGATAAGCAAGTGTTCTTGTGTTTGAACCTCCACTCAGAAGA  950

seq1  GAAATAAAATAGACATCAG-AGGCAGATGGAGGGAAGAAACTGGG--TGG  994
      ||||||||||||||||||| |||||||||||||||||||||||||   ||
seq2  GAAATAAAATAGACATCAGAAGGCAGATGGAGGGAAGAAACTGGGGTGGG  1000

seq1  GAGAA--GAGGTG-AGAA-GATGAATGGGGAT  1022
      |||||   ||||| |||| ||||||| |||||
seq2  GAGAAAGAAGGTGAAGAAGGATGAATTGGGAT  1032

seq1: chr2_68500922_68502059
seq2: B6Ng01-245A17.g_66_1202 (reverse)

seq1  GTGT-AGTGAGAAGGTGATATGTAGCC-ACACACCC-AAGAATATTTGGG  47
      |||| ||||||||||||||||| |||| |||||||| |||||   | || 
seq2  GTGTAAGTGAGAAGGTGATATGAAGCCAACACACCCAAAGAAATGTCGGT  50

seq1  TCACAAATTTGGTTATGATAAGGTTTTTTGGGGGGGA--CAAAGAGTTGG  95
      ||||||  || | |||||||| ||||||| |||| ||   |||||| || 
seq2  TCACAA--TTAG-TATGATAAAGTTTTTTTGGGGAGAACAAAAGAG-TGA  96

seq1  GTAGCCAGTGAAGGGAGTAGACCTGGAAAAATATAAGAGATGAGAAATGA  145
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  GTAGCCAGTGAAGGGAGTAGACCTGGAAAAATATAGAAGATGAGAAATGA  146

seq1  ATATGATCAAAATACAATATGTGAGATGATCAAATAATTAATTTTTTAAA  195
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  ATATGATCAAAATACAATATGTGAGATGATCAAATAA-TAATTTTTT-AA  194

seq1  ATAATGAATCTAAATCATATCCCCTGGGATCATTGATTCCCACCTCTTGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAATCTAAATCATATCCCCTGGGATCATTGATTCCCACCTCTTGG  244

seq1  TACTTTCTGAAAAAGCTCTTATTCTCTGGAAAATTGGGCTGTGATGGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGAAAAAGCTCTTATTCTCTGGAAAATTGGGCTGTGATGGAGA  294

seq1  AAGTGAATCAATAGAGCCAGATGTTCCTTTTTGTTTGTTTGTTTTTACCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATCAATAGAGCCAGATGTTCCTTTTTGTTTGTTTGTTTTTACCC  344

seq1  TCATTTTTTCTTTTCCTCTCAGGCATCATGATATGCTGGCCATACTCAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTCTTTTCCTCTCAGGCATCATGATATGCTGGCCATACTCAGT  394

seq1  AGCTTTAAGACTCCAGATTTATCCTTGGATAAAATAAGCTACTACTCTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAGACTCCAGATTTATCCTTGGATAAAATAAGCTACTACTCTAC  444

seq1  CAACCATACTGTCAGTCGTTATCAAAGTTATACAGTGTCTTACTGCTTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATACTGTCAGTCGTTATCAAAGTTATACAGTGTCTTACTGCTTAG  494

seq1  TACTTTGATAGACATGACAAGGATAAATATTGATTTGTTTCTACCTAGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGATAGACATGACAAGGATAAATATTGATTTGTTTCTACCTAGTT  544

seq1  TGAAGGGAACATAGAAGTTGCAAAGAGATAGATAATAACAAATGATAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAACATAGAAGTTGCAAAGAGATAGATAATAACAAATGATAAAA  594

seq1  ATGTAGGCACCTATTGGAACCAGGATACTAATACTCTGTGTTATCAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCACCTATTGGAACCAGGATACTAATACTCTGTGTTATCAAATA  644

seq1  GATCTATATTTATGATTGTATGATATACGTGCACTTCTAAATAGAGATGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATATTTATGATTGTATGATATACGTGCACTTCTAAATAGAGATGA  694

seq1  ATGCTGCAGTGTGTGTGTGTGAGTGTAAATAAATGAATAAAATAAGACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGTGTGTGTGTGTGAGTGTAAATAAATGAATAAAATAAGACTA  744

seq1  TAATTGTAGTGATAAATTGCTGAAAATGAATTGCTCTCTACATAAAAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTAGTGATAAATTGCTGAAAATGAATTGCTCTCTACATAAAAAGA  794

seq1  GGGAGATGTAGGTTAAATTTAGAATTCTTGGTGAAGAAGCCTAAGAAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGTAGGTTAAATTTAGAATTCTTGGTGAAGAAGCCTAAGAAAAT  844

seq1  GTCTTTCAGAAAGATTCTCTGCAATTATATTTAATCTCAAAGCTCACCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAGAAAGATTCTCTGCAATTATATTTAATCTCAAAGCTCACCCA  894

seq1  GTAGCTGCAGGCTTTGAGAAGCAGAATGGAATGCTAGTTTTCAGGAGTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGCAGGCTTTGAGAAGCAGAATGGAATGCTAGTTTTCAGGAGTCA  944

seq1  GATCATTTCAATTCTCCCTATAATTCTTAAATATCAAATTTATTATAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTCAATTCTCCCTATAATTCTTAAATATCAAATTTATTATAGAG  994

seq1  TCAAAAGGATTGTTAAGAGTGAAATCACACCGCTCTTTACCACTCAGCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGATTGTTAAGAGTGAAATCACACCGCTCTTTACCACTCAGCAT  1044

seq1  GTCCAGCGTGCTGTTTTTGCATTTTCCTAAGTGATGTTCATTAGACTTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCGTGCTGTTTTTGCATTTTCCTAAGTGATGTTCATTAGACTTGC  1094

seq1  CCAACTCTGAAAAGATCCTACCTTTAAGCTTACCTAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTGAAAAGATCCTACCTTTAAGCTTACCTAAGAATTC  1137