BAC Information

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BAC

Clone NameB6Ng01-245D01
Chromosome2 (Build37)
Map Location 56,836,048 - 56,961,050
singlet/doubletdoublet
Overlap geneLOC227920, Nr4a2
Upstream genenone
Downstream geneLOC100041900, LOC100042910, Gpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245D01.bB6Ng01-245D01.g
ACCGA054138GA054139
length1,1151,000
definitionB6Ng01-245D01.b B6Ng01-245D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,959,923 - 56,961,050)(56,836,048 - 56,836,957)
sequence
gaattctcctccaacttgcagaatatgaacatcgacatttctgccttctc
ctgcattgctgccctggctatggtcacaggtcagtactgctggtgcagga
cacttccccttccgaacttcctctggtgggaccggtcatggctttcccta
atcgcagattctttctgattctgccatctgactaactcccctctgcattc
ttttgtttctggttgcattttctgcagagagacacgggctcaaggaaccc
aagagagtggaagagctacaaaacaaaattgtaaattgtcttaaagacca
tgtgactttcaataatgggggtttgaaccgacccaactacctgtctaaac
tgttggggaagctgccagaactccgcaccctttgcacacagggcctccag
cgcattttctacctgaaattggaagacttggtaccaccaccagcaataat
tgacaaacttttcctggacaccttacctttctaagaccttctcccaagca
cgtcaaagaactggaaagaaaaaaaaaataacatccagagggggctggtc
acatgggcagagagctggttgaagtgtccagttcaccttatctcccttct
gtagacccctagccctcaccccttaagtaaacaaacaaacaaacaaacca
caaataaaaactgtcgctatttcctaacctgcaggcagaacctgaaaggg
cattttggctccggggcatcctggatttagaaaacggacagcacacagta
cagtggtataaactttttattatcagttcaaaatcagtttgttgttcaga
agaaagattgctaatgtatgatgggaaatgtttggccatgcttgcttgtt
gcagttaagacaaatgtaacacacacacacacacacacacacacacacac
acacacacacttaatgggaccctcctattttgccctttaacaagacttca
agttttctgctgtaaaagaaagctgtaatatatagtaaaactaaatgtgc
gtggggtggcatgatggagcagagctggtaatttatcatgcagtttgctt
ttaaatattttgtgcctatttatggataatatacaattctaaaggtaagg
tgtgcttggcaaaaa

gaattccttatcgtatttctggaatggtctagttagaaaatttggcagtt
gagggcacacaaaagctgttgaagtgataacagttattgtcttttctatg
tccataagcacacgtttcaaaaccgtgtggtgaaagctgcccacacagac
aggaccgatgttggtttggattaaggagtacaacaccaataaagcagtaa
ctaaaaccacaactcaggccatccatggagaaactgactcatgataagta
tcgtggattgcttttaccattgtcgagtctgctagaaagagagagatcct
ctctgcttcggtttccaccatttcaaatagaggtagaaagaaagttggaa
aacatggcttgcaaggtttgggtgaattttcacctcttgtaccacagaca
ttgaaaatacaaggtaagtgttcctctttctccacatcctagccagcatc
tgctgttgcctaaatttttgatcctagccattctaactggtgtgaggtgg
aatctcagggttgttttgatttgcatttccctgatgattaaagattaaag
atgttgaacattttctcatgtacctttccttctttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tctcttctccttctccttctccttctcttccttctcctccatactcttca
tcttctcctcctctttctcctcttcctccttcctccttctcctctccttc
ccccctctctctctcataaaactgcaaagcttctgtagggcaaaagatac
tgtcaataaggccacaaacagattgggaaagaatttttaccaatccctaa
aatctgatagggggactaatatcccatatatacaaagagctcaagaaagc
tgaactccagaaattcaaagagccccattaaaaaaatgggggtacagagc
taaacaaagaaattctccactgaggaatactggaggggcttgagaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56959923_56961050
seq2: B6Ng01-245D01.b_46_1160 (reverse)

seq1  TTTTTG-CAAACACA-CTTACTTTTTAGAATTTGTAATATTTATTCATAA  48
      |||||| ||| |||| |||||  ||||||| |||| ||| |||| |||||
seq2  TTTTTGCCAAGCACACCTTAC-CTTTAGAA-TTGT-ATA-TTATCCATAA  46

seq1  ATAGGCACAAAATAATTTAAAAAGCCAAACTGCATTGGATAAATTTACAA  98
      ||||||||||||| ||||||||   ||||||||||  |||||| |||| |
seq2  ATAGGCACAAAAT-ATTTAAAA--GCAAACTGCAT--GATAAA-TTACCA  90

seq1  GCCTCTGCCTTCAATTCATGCCA-CCCACGCAACATTTAGTTTTACTATA  147
      | ||||||  || | |||||||| ||||||| ||||||||||||||||||
seq2  G-CTCTGC--TCCA-TCATGCCACCCCACGC-ACATTTAGTTTTACTATA  135

seq1  TATTACAGCTTTC-TTTACAGCAGAAAACTTTGAAGTCTTGTTAAAGGGC  196
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TATTACAGCTTTCTTTTACAGCAGAAAAC-TTGAAGTCTTGTTAAAGGGC  184

seq1  AAAATAGGAGGGTCCCATTAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAATAGGAGGGTCCCATTAA-GTGTGTGTGTGTGTGTGTGTGTGTGTGT  233

seq1  GTGTGTGTGTGTGTTACATTTGTCTTAACTGCAACAAGCAAGCATGGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTACATTTGTCTTAACTGCAACAAGCAAGCATGGCCA  283

seq1  AACATTTCCCATCATACATTAGCAATCTTTCTTCTGAACAACAAACTGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCCATCATACATTAGCAATCTTTCTTCTGAACAACAAACTGAT  333

seq1  TTTGAACTGATAATAAAAAGTTTATACCACTGTACTGTGTGCTGTCCGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTGATAATAAAAAGTTTATACCACTGTACTGTGTGCTGTCCGTT  383

seq1  TTCTAAATCCAGGATGCCCCGGAGCCAAAATGCCCTTTCAGGTTCTGCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATCCAGGATGCCCCGGAGCCAAAATGCCCTTTCAGGTTCTGCCT  433

seq1  GCAGGTTAGGAAATAGCGACAGTTTTTATTTGTGGTTTGTTTGTTTGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAGGAAATAGCGACAGTTTTTATTTGTGGTTTGTTTGTTTGTTT  483

seq1  GTTTACTTAAGGGGTGAGGGCTAGGGGTCTACAGAAGGGAGATAAGGTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTAAGGGGTGAGGGCTAGGGGTCTACAGAAGGGAGATAAGGTGA  533

seq1  ACTGGACACTTCAACCAGCTCTCTGCCCATGTGACCAGCCCCCTCTGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACACTTCAACCAGCTCTCTGCCCATGTGACCAGCCCCCTCTGGAT  583

seq1  GTTATTTTTTTTTTCTTTCCAGTTCTTTGACGTGCTTGGGAGAAGGTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTTTTTTCTTTCCAGTTCTTTGACGTGCTTGGGAGAAGGTCTT  633

seq1  AGAAAGGTAAGGTGTCCAGGAAAAGTTTGTCAATTATTGCTGGTGGTGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTAAGGTGTCCAGGAAAAGTTTGTCAATTATTGCTGGTGGTGGT  683

seq1  ACCAAGTCTTCCAATTTCAGGTAGAAAATGCGCTGGAGGCCCTGTGTGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCTTCCAATTTCAGGTAGAAAATGCGCTGGAGGCCCTGTGTGCA  733

seq1  AAGGGTGCGGAGTTCTGGCAGCTTCCCCAACAGTTTAGACAGGTAGTTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCGGAGTTCTGGCAGCTTCCCCAACAGTTTAGACAGGTAGTTGG  783

seq1  GTCGGTTCAAACCCCCATTATTGAAAGTCACATGGTCTTTAAGACAATTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTTCAAACCCCCATTATTGAAAGTCACATGGTCTTTAAGACAATTT  833

seq1  ACAATTTTGTTTTGTAGCTCTTCCACTCTCTTGGGTTCCTTGAGCCCGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGTTTTGTAGCTCTTCCACTCTCTTGGGTTCCTTGAGCCCGTG  883

seq1  TCTCTCTGCAGAAAATGCAACCAGAAACAAAAGAATGCAGAGGGGAGTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGCAGAAAATGCAACCAGAAACAAAAGAATGCAGAGGGGAGTTA  933

seq1  GTCAGATGGCAGAATCAGAAAGAATCTGCGATTAGGGAAAGCCATGACCG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGGCAGAATCAGAAAGAATCTGCGATTAGGGAAAGCCATGACCG  983

seq1  GTCCCACCAGAGGAAGTTCGGAAGGGGAAGTGTCCTGCACCAGCAGTACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAGAGGAAGTTCGGAAGGGGAAGTGTCCTGCACCAGCAGTACT  1033

seq1  GACCTGTGACCATAGCCAGGGCAGCAATGCAGGAGAAGGCAGAAATGTCG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGACCATAGCCAGGGCAGCAATGCAGGAGAAGGCAGAAATGTCG  1083

seq1  ATGTTCATATTCTGCAAGTTGGAGGAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  ATGTTCATATTCTGCAAGTTGGAGGAGAATTC  1115


seq1: chr2_56836048_56836957
seq2: B6Ng01-245D01.g_66_979

seq1  GAATTCCTTATCGTATTTCTGGAATGGTCTAGTTAGAAAATTTGGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCGTATTTCTGGAATGGTCTAGTTAGAAAATTTGGCAGTT  50

seq1  GAGGGCACACAAAAGCTGTTGAAGTGATAACAGTTATTGTCTTTTCTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACACAAAAGCTGTTGAAGTGATAACAGTTATTGTCTTTTCTATG  100

seq1  TCCATAAGCACACGTTTCAAAACCGTGTGGTGAAAGCTGCCCACACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGCACACGTTTCAAAACCGTGTGGTGAAAGCTGCCCACACAGAC  150

seq1  AGGACCGATGTTGGTTTGGATTAAGGAGTACAACACCAATAAAGCAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCGATGTTGGTTTGGATTAAGGAGTACAACACCAATAAAGCAGTAA  200

seq1  CTAAAACCACAACTCAGGCCATCCATGGAGAAACTGACTCATGATAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCACAACTCAGGCCATCCATGGAGAAACTGACTCATGATAAGTA  250

seq1  TCGTGGATTGCTTTTACCATTGTCGAGTCTGCTAGAAAGAGAGAGATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGATTGCTTTTACCATTGTCGAGTCTGCTAGAAAGAGAGAGATCCT  300

seq1  CTCTGCTTCGGTTTCCACCATTTCAAATAGAGGTAGAAAGAAAGTTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCGGTTTCCACCATTTCAAATAGAGGTAGAAAGAAAGTTGGAA  350

seq1  AACATGGCTTGCAAGGTTTGGGTGAATTTTCACCTCTTGTACCACAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTTGCAAGGTTTGGGTGAATTTTCACCTCTTGTACCACAGACA  400

seq1  TTGAAAATACAAGGTAAGTGTTCCTCTTTCTCCACATCCTAGCCAGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATACAAGGTAAGTGTTCCTCTTTCTCCACATCCTAGCCAGCATC  450

seq1  TGCTGTTGCCTAAATTTTTGATCCTAGCCATTCTAACTGGTGTGAGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGCCTAAATTTTTGATCCTAGCCATTCTAACTGGTGTGAGGTGG  500

seq1  AATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAAGATTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAAGATTAAAG  550

seq1  ATGTTGAACATTTTCTCATGTACCTTTCCTTCTTTCTTCTTCTTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAACATTTTCTCATGTACCTTTCCTTCTTTCTTCTTCTTCTTCTT  600

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  650

seq1  TCTCTTCTCCTTCTCCTTCTCCTTCTCTTCCTTCTCCTCCATACTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCCTTCTCCTTCTCCTTCTCTTCCTTCTCCTCCATACTCTTCA  700

seq1  TCTTCTCCTCCTCTTTCTCCTCTTCCTCCTTCCTCCTTCTCCTCTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTCCTCTTTCTCCTCTTCCTCCTTCCTCCTTCTCCTCTCCTTC  750

seq1  CCCCCTCTCTCTCTCATAAAACTGCAAAGCTTCTGTAGGGCAAAAGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTCTCTCTCATAAAACTGCAAAGCTTCTGTAGGGCAAAAGATAC  800

seq1  TGTCAATAAGGCCACAAACAGATTGGGAAAGAATTTTTACCAATCC--TA  848
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TGTCAATAAGGCCACAAACAGATTGGGAAAGAATTTTTACCAATCCCTAA  850

seq1  AATCTGATA-GGGGACTAATATCCAATATATACAAAGAGCTCAAG-AAGC  896
      ||||||||| |||||||||||||| |||||||||||||||||||| ||||
seq2  AATCTGATAGGGGGACTAATATCCCATATATACAAAGAGCTCAAGAAAGC  900

seq1  TGAACTCCAGAAAT  910
      ||||||||||||||
seq2  TGAACTCCAGAAAT  914


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