BAC Information

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BAC

Clone NameB6Ng01-245E10
Chromosome2 (Build37)
Map Location 63,394,576 - 63,597,854
singlet/doubletdoublet
Overlap genenone
Upstream geneFap, Ifih1, Gca, Kcnh7, EG667257
Downstream geneFign, LOC620544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245E10.bB6Ng01-245E10.g
ACCGA054201GA054202
length1,1861,171
definitionB6Ng01-245E10.b B6Ng01-245E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,596,687 - 63,597,854)(63,394,576 - 63,395,748)
sequence
gaattcaatctagaaatcgaattcagatgaagacctaaatatagacaatg
gtaatagcttaacttagcagcctttaggggatacatctaaaggagacatc
acactaaataagtttgttaagcggtgagattcttagtggtactctctgtt
tcaaaagtgaggaaaataaagcaggaaatatgggaagacttaactactgg
ggtatggaaccagactcaggctgcctcagttgaggttctatgcccattta
aaagagtttcccaaaaggccctaggagaggaaactatgtagccatcagtc
tgtggccttcactggaaaatatggcttcagtgccccatgaataacagatg
cttctactattttgttacattagttaagtttccaataaaagataacacct
caaaaatgactttaagagacgacccttttgcaagggttggagcatggaat
taatatggatggacaatttccaaaggcaagagaagcttttgttgttttta
ttgcttgttgtttgttttgtttattttaaaaactacaaaagcaaaggctg
aaagaaggaaaagcaaggagaccaaggactgatcacatgaccagcgtgca
ggaggagctttttggctagaggactatccccctttatcttctgataggcc
ttcttctatagtcctgtagcatcaacttcagtctctttgttcttcaatct
gcttggctcaaaagtcaatgcaaatctgaagcatctttacaaagctctag
aattagcttcaaactctaaagggagcagtggacctggattctcctgccct
ttgccccacccttcttccctctggggcaagactcttaagactctttcttc
tgtatcttttggaagaataagcatggaacaatgtgaatttctagtctgta
cttaattgaaatgggttcttcagaatgtctgaagctcttaagggttgttc
tactttagtcatttttttttccacatttttacttactattcttatttttt
ggacaacctcatgctgtgtgccagatttagttcaagaatataaatgttta
tgttttcattcttgtaatatgttagtgttaattttcctctgccctgagct
catattttgaatataaaagtgatctgttaatacattaaccgttctcttaa
cacattcattggacctttctgttttttctgaattat

gaattcaaatctcagccacaagtcttcatatgtcttttgtgctaggcttc
tttcagatacaaaatttattgcatatatttaagatgtgaaatcattccag
atggctgggtgcacttgctgtcacattcaaggttatattatttatttgtt
aaaatactaactaccttgtaaatctttaagcagtgttttcaatgtcttcc
attcctggatttattgtccggagtcatccttctctatcgctctaccctac
ttaacatttcattcatattttctcatgtttctggccacatataatacctt
ctcattttttctttcattatttattctctctctttcttttctcattcttt
ctgattttaattttgtattaaagttggcaacatgtcccaattattatcag
ctgcaaatttaattaacatgctgtttattttttcatccagataattaata
aagttgttagagaaaacttggatgcacaccaagcaccccagcagacagct
cccctaagtcggatgctctgctgtttataattacctttctcttatggtcc
ttaagcaaattttcagtgctcattccagagccaatttaaattaatttgta
gggaactgctttaagaaacacaccaactgtttcacagtctctccttagag
cccagattctgtaaaatatgtatactttattactcatgccaaagtggtat
tagtgaaattgaacatttaagcacgaagagagcagagtcgggaagtcctc
actgagagagcatggtctcaataaacactgaggacaaagctctaattgca
ttatttatgagctaaatgagaacataaaagaggcattcacatttcacctt
ttttgccacagacttccctttttcacttaacttaatgaaattactagctt
atttcaaattttattaatcattttggcatacgttcaatagtaatatatta
aaaattattaaaattttgcccaaaattaaggaatgatttcaaagagtttt
aaatttacatcagtacaaacttcttacaaatgtaatattttacacaaacc
ccaatttgagttcgtaaattttaagtccatagagaataaataaggatttt
agatacttactctcatattattaataggtaaattactacatgacatggtt
acgttctttgcatggcatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_63596687_63597854
seq2: B6Ng01-245E10.b_47_1232 (reverse)

seq1  ATAAATCAG-AAAAACAGAAAG--TCAATGAAATGTGTAAAGAGAAAGGT  47
      |||| |||| ||||||||||||   ||||| ||||||| ||||||| |||
seq2  ATAATTCAGAAAAAACAGAAAGGTCCAATG-AATGTGTTAAGAGAACGGT  49

seq1  TAATGGTATAACAGGATCAC-TTTATA-TCAAAATATTGAGGCTCA-GGC  94
      |||||   ||||| |||||| |||||| |||||||| ||| ||||| |||
seq2  TAATGTATTAACA-GATCACTTTTATATTCAAAATA-TGA-GCTCAGGGC  96

seq1  AGAG---AAATAACACCTACATA-TAC-AGAATG-AAACATAAACATTTA  138
      ||||   || ||||||  ||||| ||| |||||| |||||||||||||||
seq2  AGAGGAAAATTAACACTAACATATTACAAGAATGAAAACATAAACATTTA  146

seq1  TA-TCTTGAAACTAATCTGGCACACAGCATGAGGTTGTCC-AAAAATAAG  186
      || |||||||   ||||||||||||||||||||||||||| |||||||||
seq2  TATTCTTGAACTAAATCTGGCACACAGCATGAGGTTGTCCAAAAAATAAG  196

seq1  -ATAGTAAGT-AAAATGTTGGAAAAAAAATGACT-AAGTAGAACAA-CCT  232
       ||||||||| ||||||| | ||||||||||||| ||||||||||| |||
seq2  AATAGTAAGTAAAAATGTGGAAAAAAAAATGACTAAAGTAGAACAACCCT  246

seq1  TAAGAGCTTCAGACATTCTGAAGAA-CCATTTCAATT-AGTACAGACTAG  280
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TAAGAGCTTCAGACATTCTGAAGAACCCATTTCAATTAAGTACAGACTAG  296

seq1  -AATTCACA-TGTTCCATGCTTATTCTTCCAAAAGATACAGAAGAAAGAG  328
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACATTGTTCCATGCTTATTCTTCCAAAAGATACAGAAGAAAGAG  346

seq1  TCTTAAGAGTCTTGCCCCAGAGGGAAGAAGGGTGGGGCAAAGGGCAGGAG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAGTCTTGCCCCAGAGGGAAGAAGGGTGGGGCAAAGGGCAGGAG  396

seq1  AATCCAGGTCCACTGCTCCCTTTAGAGTTTGAAGCTAATTCTAGAGCTTT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGTCCACTGCTCCCTTTAGAGTTTGAAGCTAATTCTAGAGCTTT  446

seq1  GTAAAGATGCTTCAGATTTGCATTGACTTTTGAGCCAAGCAGATTGAAGA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATGCTTCAGATTTGCATTGACTTTTGAGCCAAGCAGATTGAAGA  496

seq1  ACAAAGAGACTGAAGTTGATGCTACAGGACTATAGAAGAAGGCCTATCAG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGACTGAAGTTGATGCTACAGGACTATAGAAGAAGGCCTATCAG  546

seq1  AAGATAAAGGGGGATAGTCCTCTAGCCAAAAAGCTCCTCCTGCACGCTGG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGGGGGATAGTCCTCTAGCCAAAAAGCTCCTCCTGCACGCTGG  596

seq1  TCATGTGATCAGTCCTTGGTCTCCTTGCTTTTCCTTCTTTCAGCCTTTGC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATCAGTCCTTGGTCTCCTTGCTTTTCCTTCTTTCAGCCTTTGC  646

seq1  TTTTGTAGTTTTTAAAATAAACAAAACAAACAACAAGCAATAAAAACAAC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTTTTTAAAATAAACAAAACAAACAACAAGCAATAAAAACAAC  696

seq1  AAAAGCTTCTCTTGCCTTTGGAAATTGTCCATCCATATTAATTCCATGCT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTCTCTTGCCTTTGGAAATTGTCCATCCATATTAATTCCATGCT  746

seq1  CCAACCCTTGCAAAAGGGTCGTCTCTTAAAGTCATTTTTGAGGTGTTATC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTTGCAAAAGGGTCGTCTCTTAAAGTCATTTTTGAGGTGTTATC  796

seq1  TTTTATTGGAAACTTAACTAATGTAACAAAATAGTAGAAGCATCTGTTAT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGAAACTTAACTAATGTAACAAAATAGTAGAAGCATCTGTTAT  846

seq1  TCATGGGGCACTGAAGCCATATTTTCCAGTGAAGGCCACAGACTGATGGC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGCACTGAAGCCATATTTTCCAGTGAAGGCCACAGACTGATGGC  896

seq1  TACATAGTTTCCTCTCCTAGGGCCTTTTGGGAAACTCTTTTAAATGGGCA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTTTCCTCTCCTAGGGCCTTTTGGGAAACTCTTTTAAATGGGCA  946

seq1  TAGAACCTCAACTGAGGCAGCCTGAGTCTGGTTCCATACCCCAGTAGTTA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTCAACTGAGGCAGCCTGAGTCTGGTTCCATACCCCAGTAGTTA  996

seq1  AGTCTTCCCATATTTCCTGCTTTATTTTCCTCACTTTTGAAACAGAGAGT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCCATATTTCCTGCTTTATTTTCCTCACTTTTGAAACAGAGAGT  1046

seq1  ACCACTAAGAATCTCACCGCTTAACAAACTTATTTAGTGTGATGTCTCCT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAAGAATCTCACCGCTTAACAAACTTATTTAGTGTGATGTCTCCT  1096

seq1  TTAGATGTATCCCCTAAAGGCTGCTAAGTTAAGCTATTACCATTGTCTAT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTATCCCCTAAAGGCTGCTAAGTTAAGCTATTACCATTGTCTAT  1146

seq1  ATTTAGGTCTTCATCTGAATTCGATTTCTAGATTGAATTC  1168
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTCTTCATCTGAATTCGATTTCTAGATTGAATTC  1186


seq1: chr2_63394576_63395748
seq2: B6Ng01-245E10.g_67_1237

seq1  GAATTCAAATCTCAGCCACAAGTCTTCATATGTCTTTTGTGCTAGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTCAGCCACAAGTCTTCATATGTCTTTTGTGCTAGGCTTC  50

seq1  TTTCAGATACAAAATTTATTGCATATATTTAAGATGTGAAATCATTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATACAAAATTTATTGCATATATTTAAGATGTGAAATCATTCCAG  100

seq1  ATGGCTGGGTGCACTTGCTGTCACATTCAAGGTTATATTATTTATTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGTGCACTTGCTGTCACATTCAAGGTTATATTATTTATTTGTT  150

seq1  AAAATACTAACTACCTTGTAAATCTTTAAGCAGTGTTTTCAATGTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTAACTACCTTGTAAATCTTTAAGCAGTGTTTTCAATGTCTTCC  200

seq1  ATTCCTGGATTTATTGTCCGGAGTCATCCTTCTCTATCGCTCTACCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGATTTATTGTCCGGAGTCATCCTTCTCTATCGCTCTACCCTAC  250

seq1  TTAACATTTCATTCATATTTTCTCATGTTTCTGGCCACATATAATACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTCATTCATATTTTCTCATGTTTCTGGCCACATATAATACCTT  300

seq1  CTCATTTTTTCTTTCATTATTTATTCTCTCTCTTTCTTTTCTCATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTCTTTCATTATTTATTCTCTCTCTTTCTTTTCTCATTCTTT  350

seq1  CTGATTTTAATTTTGTATTAAAGTTGGCAACATGTCCCAATTATTATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTAATTTTGTATTAAAGTTGGCAACATGTCCCAATTATTATCAG  400

seq1  CTGCAAATTTAATTAACATGCTGTTTATTTTTTCATCCAGATAATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATTTAATTAACATGCTGTTTATTTTTTCATCCAGATAATTAATA  450

seq1  AAGTTGTTAGAGAAAACTTGGATGCACACCAAGCACCCCAGCAGACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTAGAGAAAACTTGGATGCACACCAAGCACCCCAGCAGACAGCT  500

seq1  CCCCTAAGTCGGATGCTCTGCTGTTTATAATTACCTTTCTCTTATGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAGTCGGATGCTCTGCTGTTTATAATTACCTTTCTCTTATGGTCC  550

seq1  TTAAGCAAATTTTCAGTGCTCATTCCAGAGCCAATTTAAATTAATTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAATTTTCAGTGCTCATTCCAGAGCCAATTTAAATTAATTTGTA  600

seq1  GGGAACTGCTTTAAGAAACACACCAACTGTTTCACAGTCTCTCCTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGCTTTAAGAAACACACCAACTGTTTCACAGTCTCTCCTTAGAG  650

seq1  CCCAGATTCTGTAAAATATGTATACTTTATTACTCATGCCAAAGTGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTCTGTAAAATATGTATACTTTATTACTCATGCCAAAGTGGTAT  700

seq1  TAGTGAAATTGAACATTTAAGCACGAAGAGAGCAGAGTCGGGAAGTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATTGAACATTTAAGCACGAAGAGAGCAGAGTCGGGAAGTCCTC  750

seq1  ACTGAGAGAGCATGGTCTCAATAAACACTGAGGACAAAGCTCTAATTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGAGCATGGTCTCAATAAACACTGAGGACAAAGCTCTAATTGCA  800

seq1  TTATTTATGAGCTAAATGAGAACATAAAAGAGGCATTCACATTTCACCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGAGCTAAATGAGAACATAAAAGAGGCATTCACATTTCACCTT  850

seq1  TTTTGCCACAGACTTCCC-TTTTCACTTAACTTAATGAAATTACTAGCTT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTGCCACAGACTTCCCTTTTTCACTTAACTTAATGAAATTACTAGCTT  900

seq1  ATTTCAAATTTTATTAATCATTTTGGCATACGTTCAATAGTAATATATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATTTTATTAATCATTTTGGCATACGTTCAATAGTAATATATTA  950

seq1  AAAATTATTAAAATTTTGCCCAAAATTAAGGAATGATTTCAAAAGAGTTT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAATTATTAAAATTTTGCCCAAAATTAAGGAATGATTTC-AAAGAGTTT  999

seq1  TAAATTTACATCAGTACAAAC-TCTTACAAATGT-ATATTTTACCACAAA  1047
      ||||||||||||||||||||| |||||||||||| |||||||| ||||||
seq2  TAAATTTACATCAGTACAAACTTCTTACAAATGTAATATTTTA-CACAAA  1048

seq1  -CCCAATTTTAAGTCGT-AATTTTAAGT-CATAGAGAAATAAATTAAGAT  1094
       |||||||| |  |||| |||||||||| ||||||| ||||||| | |||
seq2  CCCCAATTTGAGTTCGTAAATTTTAAGTCCATAGAG-AATAAATAAGGAT  1097

seq1  TTTAGATACTTACTCTTCATATTAATTTAATAAGTAAATATACTACTATT  1144
      ||||||||||||||| ||||||||  |||||| |||||| ||||||   |
seq2  TTTAGATACTTACTC-TCATATTA--TTAATAGGTAAAT-TACTAC--AT  1141

seq1  GACATTGTTACTGTCTTTGAAT-GCATAGC  1173
      ||||| |||||  |||||| || |||||||
seq2  GACATGGTTACGTTCTTTGCATGGCATAGC  1171


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