BAC Information

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BAC

Clone NameB6Ng01-246J10
Chromosome2 (Build37)
Map Location 172,947,498 - 173,135,143
singlet/doubletdoublet
Overlap geneEG619800, Pck1, Zbp1, Tmepai
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl
Downstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J10.bB6Ng01-246J10.g
ACCGA055166GA055167
length1,137107
definitionB6Ng01-246J10.b B6Ng01-246J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,134,014 - 173,135,143)(172,947,498 - 172,947,604)
sequence
gaattcttttatttatttatttatttatttatttatttatttatttattt
aaacagggtttctctgtgcagctctggctatcctggaactcactctgtag
accaggctggcctcgaactcagaaatccacctgcctctgcctcccaagtg
ctgggattacaggcgtgcgccaccactgcctggccttagaattcttttta
aatggacggtaaagactggccagaccacgaagaccttggttcacactggt
tccgcacttggttccacatggtaagcacataaaacagtccagccattttg
gaagcagctggtgggtcctggaagtgtagccgtgagattcggtggttaca
tggagcataaccatgggtgtaaacacgtggagccatggaaagttactgaa
tggtgaacttaaaagtgattgtttacattatactaatggctctgtgattt
ctaataatcagtaagactggatcactatcctgggaaatcaaagggaggct
atcccctgggtgaggatgccaacctgcctaagatcatctatctctacagc
atggcctccagcctgtggggctgctgggatggggacagtgggcctaacag
gaagtgagtccactcaggggcctggccttggggatattggttcacactct
gagtgccacgacatcccagaggcaaaccaatacagctgagcagctgagac
tggcctcaatgaaaactaccaaccacacaaacctttcctgcttttaaagt
gtttgcctcaggtgtttcgtcacagcaacataacgctgtccaacacacct
gtttcttctacgatttattgctgggtactaacatccaacagctatttcat
tcccgtaacagttctacggatcagaaacccgacacggagcaagaatcttc
tggaaagtcattcaatcacatacctggctcctgggctgggtcacatggac
agggcccagctgagtctgggtgcccaaacgcctgcccaggaataactcca
gctcctgttcttttggcacagtgaccccagagtgccaagtgtccaggcag
aacctctttggccacttaaagcccaacatgccagctgggccaggcctccg
ctcttccaggcttgttctttccacacatacctaaagc
tctttcttccagtgtcagttccctggtgctaggattgcaggcattttcca
cctggcttagcttgccttccattttttctaaatgtctggggagtgggggt
ggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173134014_173135143
seq2: B6Ng01-246J10.b_43_1179 (reverse)

seq1  GCTTTA-GTATGT---GGAAGAACAAGCCTGGAAGAGC-GAGG-CTGG-C  43
      |||||| ||||||   | |||||||||||||||||||| |||| |||| |
seq2  GCTTTAGGTATGTGTGGAAAGAACAAGCCTGGAAGAGCGGAGGCCTGGCC  50

seq1  CAGCT-GCATTGTGGGCTTTAAGTGGCCAAAGAGGTTCTGCCTGGACACT  92
      ||||| ||||  ||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCATGTTGGGCTTTAAGTGGCCAAAGAGGTTCTGCCTGGACACT  100

seq1  TGGGCACTCTGGGGTCACTGTGCCAAAAGAAACAGGAGCTGGAGTTATTC  142
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  T-GGCACTCTGGGGTCACTGTGCCAAAAG-AACAGGAGCTGGAGTTATTC  148

seq1  CTGGGCAGGCGTTTGGGCACCCAGACTCAGCTGGGCCCTGTCCATGTGAC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGCGTTTGGGCACCCAGACTCAGCTGGGCCCTGTCCATGTGAC  198

seq1  CCAGCCCAGGAGCCAGGTATGTGATTGAATGACTTTCCAGAAGATTCTTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGGAGCCAGGTATGTGATTGAATGACTTTCCAGAAGATTCTTG  248

seq1  CTCCGTGTCGGGTTTCTGATCCGTAGAACTGTTAC-GGAATGAAATAGCT  291
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCCGTGTCGGGTTTCTGATCCGTAGAACTGTTACGGGAATGAAATAGCT  298

seq1  GTTGGATGTTAGTACCCAGCAATAAATCGTAGAAGAAACAGGTGTGTTGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGTTAGTACCCAGCAATAAATCGTAGAAGAAACAGGTGTGTTGG  348

seq1  ACAGCGTTATGTTGCTGTGACGAAACACCTGAGGCAAACACTTTAAAAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTTATGTTGCTGTGACGAAACACCTGAGGCAAACACTTTAAAAGC  398

seq1  AGGAAAGGTTTGTGTGGTTGGTAGTTTTCATTGAGGCCAGTCTCAGCTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTTTGTGTGGTTGGTAGTTTTCATTGAGGCCAGTCTCAGCTGC  448

seq1  TCAGCTGTATTGGTTTGCCTCTGGGATGTCGTGGCACTCAGAGTGTGAAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTATTGGTTTGCCTCTGGGATGTCGTGGCACTCAGAGTGTGAAC  498

seq1  CAATATCCCCAAGGCCAGGCCCCTGAGTGGACTCACTTCCTGTTAGGCCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCCCAAGGCCAGGCCCCTGAGTGGACTCACTTCCTGTTAGGCCC  548

seq1  ACTGTCCCCATCCCAGCAGCCCCACAGGCTGGAGGCCATGCTGTAGAGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCATCCCAGCAGCCCCACAGGCTGGAGGCCATGCTGTAGAGAT  598

seq1  AGATGATCTTAGGCAGGTTGGCATCCTCACCCAGGGGATAGCCTCCCTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCTTAGGCAGGTTGGCATCCTCACCCAGGGGATAGCCTCCCTTT  648

seq1  GATTTCCCAGGATAGTGATCCAGTCTTACTGATTATTAGAAATCACAGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCAGGATAGTGATCCAGTCTTACTGATTATTAGAAATCACAGAG  698

seq1  CCATTAGTATAATGTAAACAATCACTTTTAAGTTCACCATTCAGTAACTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGTATAATGTAAACAATCACTTTTAAGTTCACCATTCAGTAACTT  748

seq1  TCCATGGCTCCACGTGTTTACACCCATGGTTATGCTCCATGTAACCACCG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTCCACGTGTTTACACCCATGGTTATGCTCCATGTAACCACCG  798

seq1  AATCTCACGGCTACACTTCCAGGACCCACCAGCTGCTTCCAAAATGGCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACGGCTACACTTCCAGGACCCACCAGCTGCTTCCAAAATGGCTG  848

seq1  GACTGTTTTATGTGCTTACCATGTGGAACCAAGTGCGGAACCAGTGTGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTATGTGCTTACCATGTGGAACCAAGTGCGGAACCAGTGTGAA  898

seq1  CCAAGGTCTTCGTGGTCTGGCCAGTCTTTACCGTCCATTTAAAAAGAATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCTTCGTGGTCTGGCCAGTCTTTACCGTCCATTTAAAAAGAATT  948

seq1  CTAAGGCCAGGCAGTGGTGGCGCACGCCTGTAATCCCAGCACTTGGGAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCAGGCAGTGGTGGCGCACGCCTGTAATCCCAGCACTTGGGAGG  998

seq1  CAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  1048

seq1  GTTCCAGGATAGCCAGAGCTGCACAGAGAAACCCTGTTTAAATAAATAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGATAGCCAGAGCTGCACAGAGAAACCCTGTTTAAATAAATAAA  1098

seq1  TAAATAAATAAATAAATAAATAAATAAATAAAAGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAAAGAATTC  1137

seq1: chr2_172947498_172947604
seq2: B6Ng01-246J10.g_72_178

seq1  TCTTTCTTCCAGTGTCAGTTCCCTGGTGCTAGGATTGCAGGCATTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCAGTGTCAGTTCCCTGGTGCTAGGATTGCAGGCATTTTCCA  50

seq1  CCTGGCTTAGCTTGCCTTCCATTTTTTCTAAATGTCTGGGGAGTGGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTAGCTTGCCTTCCATTTTTTCTAAATGTCTGGGGAGTGGGGGT  100

seq1  GGGGGGG  107
      |||||||
seq2  GGGGGGG  107