BAC Information

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BAC

Clone NameB6Ng01-246J24
Chromosome2 (Build37)
Map Location 13,306,779 - 13,307,505
singlet/doubletsinglet
Overlap geneCubn
Upstream gene2310047O13Rik, LOC100040837, Pter, C1ql3, Rsu1
Downstream geneTrdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J24.bB6Ng01-246J24.g
ACCGA055191GA055192
length1,207730
definitionB6Ng01-246J24.b B6Ng01-246J24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagttctgaacatctatgctccaaatgcaagggcatccacatt
cattaaagaaactttagtaaagctcaaagcacacatagcactgcacaaaa
taatagtgtgagacttcaacaccccaccctcatcaatggacaaacactgg
aaacagaaactgaacagagacacagtgaaagtagcagaagttatgaaata
aatgggtttaacagatatctatagaacattttatcttaaaacaaaaggat
atacctttttttcagaacctcatagtatcttctccaaaactgaccatata
atctgtcaccaaacaggcctcaacatatacaaaatattgaaataatccca
tgcatcctctcagatcaacacagattaaggctgatcttcaataagaacat
aaataatagaaagcccacatacacgtgatagctgaacaacactctactca
atgataacttattcaaggaaggaagaaataaagaagttaaagacttttta
gaggttaatgaaaaatgaagccacaacatacccaaactgatgagacacaa
taaaagcagtactaagaggaacagtcatagctctgagtgcctccaaaaag
aatctggggtgagcatacactagcgaattgacaggacacctgaaagctct
agaagaaaaggaagcaaattcaccccagaggagtagatgacaggaaataa
tcaaactcagggctgaaatcaaccaaatagaaataaaaagaactattcaa
ataatcaacccaaccaggaactggttctttgagaaaatcaacaagataga
taaacacttagccagactaactagaggtcacagggacagtatcctaattg
acaaaatcagaaatgaaaagggagacataacaacagaatctgaggaaatc
caaaacatcatcagatcctactacaaagactatacttaacaacactggga
aaacctggatgaaatggacattttctagacagataccatgtaccaaagta
aatcagatcagatcacgatctaacagtccatatcccctaaagaaatagaa
aaagccattatagttcccagcaggcaaataataacagctcaggaacagat
agatggtttatgccgagtctatcgagaaccttcaagagacctaattccat
atctcctctagcattcccaaaattcaaacgaagattcctcttatccaaaa
tcctctg
gaattcactggagagttccctgggggagacagtgagaacaagaaacctac
tttggaggagaagtacatgacttgaatctataatgatttctttgtctgat
taatccaccctccctcccccaccccccacccccgccccagcccccagtaa
agcaagaattaaagtaagaagaaactgctgtttcccagagggctgaacac
aaggccagtaactgcaaaggaatgaagccagcaactgctctgggcttatt
ttcattaggagatgatgtttagtgtttgggaggccctgaaaaggccataa
aaagcagagcttcaggaagagcctcctttggccccttcgacatacgccct
ttccccatgtctatctttccttctggcccaggctacagtctccagcaaat
gcagccagcagcctgtgctcctaatcaagggagtgcaaccaccagcacat
atttccagagagcacggagctggcactagatgctgacaaagaaacctaca
agttggcaaaataatgtttgtttttccttgttcatctattccccagcggt
catattcataccagctaggagtttggctaggactaggagcctccaaaaaa
ataaacactgccactttggacattctttgcttcccctggtactgggctga
aactcacaaatgaccattgctgagaggccctgtctatgctaaatgcccac
accaagtaattgttttgtttgattgtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13306779_13307505
seq2: B6Ng01-246J24.g_69_798

seq1  GAATTCACTGGAGAGTTCCCTGGGGGAGACAGTGAGAACAAGAAACCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGAGTTCCCTGGGGGAGACAGTGAGAACAAGAAACCTAC  50

seq1  TTTGGAGGAGAAGTACATGACTTGAATCTATAATGATTTCTTTGTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAGAAGTACATGACTTGAATCTATAATGATTTCTTTGTCTGAT  100

seq1  TAATCCACCCTCCCTCCCCCACCCCCCACCCCCGCCCCAGCCCCCAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACCCTCCCTCCCCCACCCCCCACCCCCGCCCCAGCCCCCAGTAA  150

seq1  AGCAAGAATTAAAGTAAGAAGAAACTGCTGTTTCCCAGAGGGCTGAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAATTAAAGTAAGAAGAAACTGCTGTTTCCCAGAGGGCTGAACAC  200

seq1  AAGGCCAGTAACTGCAAAGGAATGAAGCCAGCAACTGCTCTGGGCTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGTAACTGCAAAGGAATGAAGCCAGCAACTGCTCTGGGCTTATT  250

seq1  TTCATTAGGAGATGATGTTTAGTGTTTGGGAGGCCCTGAAAAGGCCATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGGAGATGATGTTTAGTGTTTGGGAGGCCCTGAAAAGGCCATAA  300

seq1  AAAGCAGAGCTTCAGGAAGAGCCTCCTTTGGCCCCTTCGACATACGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGCTTCAGGAAGAGCCTCCTTTGGCCCCTTCGACATACGCCCT  350

seq1  TTCCCCATGTCTATCTTTCCTTCTGGCCCAGGCTACAGTCTCCAGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATGTCTATCTTTCCTTCTGGCCCAGGCTACAGTCTCCAGCAAAT  400

seq1  GCAGCCAGCAGCCTGTGCTCCTAATCAAGGGAGTGCAACCACCAGCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGCAGCCTGTGCTCCTAATCAAGGGAGTGCAACCACCAGCACAT  450

seq1  ATTTCCAGAGAGCACGGAGCTGGCACTAGATGCTGACAAAGAAACCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGAGAGCACGGAGCTGGCACTAGATGCTGACAAAGAAACCTACA  500

seq1  AGTTGGCAAAATAATGTTTG-TTTTCCTTGTTCATCTATTCCCCAGCGGT  549
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTTGGCAAAATAATGTTTGTTTTTCCTTGTTCATCTATTCCCCAGCGGT  550

seq1  CATATTCATACCAGCTAGGAG-TTGGCTAGGACTAGGAGCCTCCAAAAGA  598
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  CATATTCATACCAGCTAGGAGTTTGGCTAGGACTAGGAGCCTCCAAAAAA  600

seq1  ATAAACACTGCCACTTTGGACATTCTTTGCTTCCCCTGGTACTGGGCTG-  647
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAAACACTGCCACTTTGGACATTCTTTGCTTCCCCTGGTACTGGGCTGA  650

seq1  AACTCACAAATGACCATTGCTGAGAGGCCCTGTCTATGCTAACTGCCCAC  697
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACTCACAAATGACCATTGCTGAGAGGCCCTGTCTATGCTAAATGCCCAC  700

seq1  ACCAAGCAATTGTCTTGTTTGATTGTGCCA  727
      |||||| |||||| ||||||||||||||||
seq2  ACCAAGTAATTGTTTTGTTTGATTGTGCCA  730