BAC Information

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BAC

Clone NameB6Ng01-247A22
Chromosome2 (Build37)
Map Location 180,336,419 - 180,478,292
singlet/doubletdoublet
Overlap geneCol9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr
Downstream geneBhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247A22.bB6Ng01-247A22.g
ACCGA055499GA055500
length1,02863
definitionB6Ng01-247A22.b B6Ng01-247A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,477,256 - 180,478,292)(180,336,419 - 180,336,481)
sequence
gaattcaggacctctggaagagcagtcagactgctcttaactgctgagtc
atctctccagcccctaacacaccagtcttaaaagagtatttttattcaaa
attggaagaccacagaagaaagtttgtgctcacaggttacttcatggcac
acctggctcagggcatcttgctctggagatttgtgcacacttctgacagg
agttgtgcagatgggtgagcgagcactgctcgtgcaccaggacagcagag
agggtctaacctatgtcactgctagcccaggctggtgcatgaagaggctg
gaagtggacacagatgttttcttctacagtaactccatttttgagtcaag
gtctctcactacatctgaagttcaccatttacactagaatggctggtcag
tgtgctccaagatttgttgggtggggttatggcgcacatcactctatcac
tgtgcttggctttggtgtgtgggttctgggaagccagacccaggccttcg
tgctgttcagcaaacatttcactcactgagccttctgccctgccttagga
gatgatacaagggaaaactctcctccgggcatggcatggccattctgaaa
tgatgtctggcgcgagcccctcacaggactgagtacattagcactcctca
cagagcagaagtcatgaggcagtttagccatgcaaacccccctcctcacc
aatgatttcggaatgaagacttttcctgtgtggtatagccacctgtaagt
tgcccatgttcctgtaaataactccaattaaactcactggtaacctgtgc
agtggtggctcacgcctttaaccctcagcatgtgagaggcagaggcagga
ggatctccatgagtttaacaccatcctggcctacataatgagttcccaaa
acagtgagggctattatacagtaaggtcctgtctcaaaacaaaacaaaaa
caaaacaaaacaaccaaaccaaacccattggttcatcaaataaacttggg
tggaccagtttgtttgctgctgggtgtt
tgtggatggtgtccacaactgactgggccctgtgccattgctccactttg
gggggtgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180477256_180478292
seq2: B6Ng01-247A22.b_47_1074 (reverse)

seq1  AACACCCAAGCAAGCAAACAAAACTGGTTCCACCCAAGTTTAATTTGATG  50
      ||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||
seq2  AACACCC-AGC-AGCAAAC-AAACTGG-TCCACCCAAGTTT-ATTTGATG  45

seq1  AACCAATGGGTTTGGTTTTGGTTTGTTTTGTTTTTGTTTTTGTTTTTGTT  100
      ||||||||||||||||||  | |||||||| ||||||||||| |||||||
seq2  AACCAATGGGTTTGGTTT--GGTTGTTTTG-TTTTGTTTTTG-TTTTGTT  91

seq1  TTGAGACAGGACCTTACTGTATAATAGCCCTCACTGTTTTGGGAACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGACCTTACTGTATAATAGCCCTCACTGTTTTGGGAACTCAT  141

seq1  TATGTAGGCCAGGATGGTGTTAAACTCATGGAGATCCTCCTGCCTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGCCAGGATGGTGTTAAACTCATGGAGATCCTCCTGCCTCTGCC  191

seq1  TCTCACATGCTGAGGGTTAAAGGCGTGAGCCACCACTGCACAGGTTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATGCTGAGGGTTAAAGGCGTGAGCCACCACTGCACAGGTTACCA  241

seq1  GTGAGTTTAATTGGAGTTATTTACAGGAACATGGGCAACTTACAGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTAATTGGAGTTATTTACAGGAACATGGGCAACTTACAGGTGGC  291

seq1  TATACCACACAGGAAAAGTCTTCATTCCGAAATCATTGGTGAGGAGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACACAGGAAAAGTCTTCATTCCGAAATCATTGGTGAGGAGGGGG  341

seq1  GTTTGCATGGCTAAACTGCCTCATGACTTCTGCTCTGTGAGGAGTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATGGCTAAACTGCCTCATGACTTCTGCTCTGTGAGGAGTGCTAA  391

seq1  TGTACTCAGTCCTGTGAGGGGCTCGCGCCAGACATCATTTCAGAATGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAGTCCTGTGAGGGGCTCGCGCCAGACATCATTTCAGAATGGCC  441

seq1  ATGCCATGCCCGGAGGAGAGTTTTCCCTTGTATCATCTCCTAAGGCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGCCCGGAGGAGAGTTTTCCCTTGTATCATCTCCTAAGGCAGGG  491

seq1  CAGAAGGCTCAGTGAGTGAAATGTTTGCTGAACAGCACGAAGGCCTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTCAGTGAGTGAAATGTTTGCTGAACAGCACGAAGGCCTGGGT  541

seq1  CTGGCTTCCCAGAACCCACACACCAAAGCCAAGCACAGTGATAGAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCCAGAACCCACACACCAAAGCCAAGCACAGTGATAGAGTGAT  591

seq1  GTGCGCCATAACCCCACCCAACAAATCTTGGAGCACACTGACCAGCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCATAACCCCACCCAACAAATCTTGGAGCACACTGACCAGCCATT  641

seq1  CTAGTGTAAATGGTGAACTTCAGATGTAGTGAGAGACCTTGACTCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTAAATGGTGAACTTCAGATGTAGTGAGAGACCTTGACTCAAAAA  691

seq1  TGGAGTTACTGTAGAAGAAAACATCTGTGTCCACTTCCAGCCTCTTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTACTGTAGAAGAAAACATCTGTGTCCACTTCCAGCCTCTTCATG  741

seq1  CACCAGCCTGGGCTAGCAGTGACATAGGTTAGACCCTCTCTGCTGTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCTGGGCTAGCAGTGACATAGGTTAGACCCTCTCTGCTGTCCTG  791

seq1  GTGCACGAGCAGTGCTCGCTCACCCATCTGCACAACTCCTGTCAGAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGAGCAGTGCTCGCTCACCCATCTGCACAACTCCTGTCAGAAGTG  841

seq1  TGCACAAATCTCCAGAGCAAGATGCCCTGAGCCAGGTGTGCCATGAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAATCTCCAGAGCAAGATGCCCTGAGCCAGGTGTGCCATGAAGTA  891

seq1  ACCTGTGAGCACAAACTTTCTTCTGTGGTCTTCCAATTTTGAATAAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGCACAAACTTTCTTCTGTGGTCTTCCAATTTTGAATAAAAAT  941

seq1  ACTCTTTTAAGACTGGTGTGTTAGGGGCTGGAGAGATGACTCAGCAGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTAAGACTGGTGTGTTAGGGGCTGGAGAGATGACTCAGCAGTTA  991

seq1  AGAGCAGTCTGACTGCTCTTCCAGAGGTCCTGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCTGACTGCTCTTCCAGAGGTCCTGAATTC  1028

seq1: chr2_180336419_180336481
seq2: B6Ng01-247A22.g_75_137

seq1  TGTGGATGGTGTCCACAACTGACTGGGCCCTGTGCCATTGCTCCACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGGTGTCCACAACTGACTGGGCCCTGTGCCATTGCTCCACTTTG  50

seq1  GGGGGTGGGGGGA  63
      |||||||||||||
seq2  GGGGGTGGGGGGA  63