BAC Information

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BAC

Clone NameB6Ng01-247G06
Chromosome2 (Build37)
Map Location 69,139,066 - 69,276,252
singlet/doubletdoublet
Overlap geneAbcb11, Dhrs9, Lrp2
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2
Downstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G06.bB6Ng01-247G06.g
ACCGA055737GA055738
length1,1301,101
definitionB6Ng01-247G06.b B6Ng01-247G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,275,117 - 69,276,252)(69,139,066 - 69,139,977)
sequence
gaattcagctggcaatttggtttaatttactggcaataaaattttatttc
caaagtatgaaacatatgcaaaaggcatgttcatacacatacattactta
cttatagaaatgctgcaattggtagctgagagagaactagtttggtcttt
tcctcttgatttttgacattttcatggatatttagcaagtactttgccta
tttggacaggactagtgtcctgtatttgtgtttcaaacactgagttatta
ttactttgattttattgtctcccctatgtgaaatcacggcccttgggcac
tcagcagtgatgcttaaaaagaacatctaaccctgagaagatctaagtct
taccatggacttgaccatagcatcaaactatgcttcttgtgtataacata
tcttggaaataaagcgacatctttatagaaacagtgttactcacactcag
gaaagcagttggttgtgccgtcagatgctaatgcttccggtgccacaaag
cgaggaagctccaccagataagttgcttcaattaggacatttttcgttac
aggctcatgttctggactgaccagggaaagcagcctaaaattgagtctgc
ctggatgaatggggagcaccgcagtgttctggcttctgcgaaccttggct
ggccaaatggtctttccatagattacctgaatggtgatcgaatctattgg
agtgactccaaagaagatgttattgaaagcataaaatacgatgggactga
caggagactcatcataaacgatggttagcagttagctaggatttgcatat
cagtaatgttctaatgtatttctgcagtgtcttagataggggatagggtt
tatgtaatcccgcagatttgtttccatcagcacccagctgctgtattgaa
tccaaactaatttcacaacaataatcctttttatatttttactgatcaaa
tcaagaaagaactaaagtttctgctaggctcctctgagatgtgtttccat
atgttaagtcaaggtgtgtctactaatatgcaataaactgctctagactt
attcattttccacgtgctagcctgttctcactttcatgtgcttgctgtcg
tgtgctcactagaaacatgtagaattggag
gaattcattgatagcaactgggatcaacaagggctccacctaagattcac
ttaatcttagaagccagggtcaagggcttcgtgcccttgccatagttctt
attttagtctattgtatagtccacctttcccttaggccattgtaaatacg
tgtgtatgggtgtaactcagctatctatagttctaagtatctattctggt
ttctccttaggtctgaaacttccttcttcctagatgatggtaaattcctg
tgtacggcagtgacctagcttttattcaaagtgatagtgtaatactagag
gctattctgaatgtcactgaataggcaacattcttcctgaattccaagcc
cattgtctgctcaaggactttctaggactgttggaacactggcaaaggct
ttagctatgtcagaattcaatcttaaaaggcacttataataagataatac
taaaagagagcacgtggatcgatacaccagactaatgcgggaatagaata
tgagtatatgggttaaagagaacgtcagactccaggagtgagtttctgtg
aaactctctgtctcatgagtggcttttaggcctctcggcctgtcaagctg
acttgacaggagtgcgtggcagggaaacaaggattccggggtaaccccag
ctacatgagagcgtagtcagtctgagatagatgagagcccatcagaacca
aagccaaccagccaacaacaataagaaggaagggaggaagttaatatcgt
ggaacagcacttaactcagaaatctaagacacatatagtactcagatgat
aagagtatatattctaacagggttaaatttttctagatctttagcagaac
tgtgactagcaaaatattagacagagtttataaattacaaaataaatgaa
aatagcttcacaatatatttattatttgctcagtctaaatttcataaatc
tgtaaattaaaagctgttttccccacagcgcttattcatgttcagttgat
gatgacattcaacttttatcccttctctattctaatttattctgaaacat
atatacatttttgcacagtattaaaaaaatttaagaggtatgagtgatac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69275117_69276252
seq2: B6Ng01-247G06.b_41_1170 (reverse)

seq1  CTCC-ATTCTACATGTTTCTAGTTGAGCACAAGGACAGGCAAGCACATGG  49
      |||| ||||||||||||||||| ||||||| | |||| |||||||||| |
seq2  CTCCAATTCTACATGTTTCTAG-TGAGCAC-ACGACA-GCAAGCACAT-G  46

seq1  AAAGTGAGAACAGGCTAGCACGTGGAAAATGAATAAGTCTAGAAGCAGTT  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGTGAGAACAGGCTAGCACGTGGAAAATGAATAAGTCTAG-AGCAGTT  95

seq1  TA-TGCATATTAGTAAGAACACACC-TGACTTAACATATGGAAAACACAA  147
      || ||||||||||||   ||||||| ||||||||||||||| |||||| |
seq2  TATTGCATATTAGTA--GACACACCTTGACTTAACATATGG-AAACAC-A  141

seq1  TCTCAGAGGAGCCTAGCAGAAACCTTAGTTCTTTCTTGATTTGATCAGTA  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCAGAGGAGCCTAGCAGAAACTTTAGTTCTTTCTTGATTTGATCAGTA  191

seq1  AAAATATAAAAAGGATTATTGTTGTG-AATTAGTTTGGATTCAATACAGC  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAATATAAAAAGGATTATTGTTGTGAAATTAGTTTGGATTCAATACAGC  241

seq1  AGCTGGGTGCTGATGGAAACAAATCTGCGGGATTACATAAACCCTATCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTGCTGATGGAAACAAATCTGCGGGATTACATAAACCCTATCCC  291

seq1  CTATCCTAAGACACTGCAGAAATACATTAGAACATTACTGATATGCAAAT  346
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAT-CTAAGACACTGCAGAAATACATTAGAACATTACTGATATGCAAAT  340

seq1  CCTAGCTAACTGCTAACCATCGTTTATGATGAGTCTCCTGTCAGTCCCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTAACTGCTAACCATCGTTTATGATGAGTCTCCTGTCAGTCCCAT  390

seq1  CGTATTTTATGCTTTCAATAACATCTTCTTTGGAGTCACTCCAATAGATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTTATGCTTTCAATAACATCTTCTTTGGAGTCACTCCAATAGATT  440

seq1  CGATCACCATTCAGGTAATCTATGGAAAGACCATTTGGCCAGCCAAGGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACCATTCAGGTAATCTATGGAAAGACCATTTGGCCAGCCAAGGTT  490

seq1  CGCAGAAGCCAGAACACTGCGGTGCTCCCCATTCATCCAGGCAGACTCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAGCCAGAACACTGCGGTGCTCCCCATTCATCCAGGCAGACTCAA  540

seq1  TTTTAGGCTGCTTTCCCTGGTCAGTCCAGAACATGAGCCTGTAACGAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCTGCTTTCCCTGGTCAGTCCAGAACATGAGCCTGTAACGAAAA  590

seq1  ATGTCCTAATTGAAGCAACTTATCTGGTGGAGCTTCCTCGCTTTGTGGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTAATTGAAGCAACTTATCTGGTGGAGCTTCCTCGCTTTGTGGCA  640

seq1  CCGGAAGCATTAGCATCTGACGGCACAACCAACTGCTTTCCTGAGTGTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGCATTAGCATCTGACGGCACAACCAACTGCTTTCCTGAGTGTGA  690

seq1  GTAACACTGTTTCTATAAAGATGTCGCTTTATTTCCAAGATATGTTATAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTGTTTCTATAAAGATGTCGCTTTATTTCCAAGATATGTTATAC  740

seq1  ACAAGAAGCATAGTTTGATGCTATGGTCAAGTCCATGGTAAGACTTAGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCATAGTTTGATGCTATGGTCAAGTCCATGGTAAGACTTAGAT  790

seq1  CTTCTCAGGGTTAGATGTTCTTTTTAAGCATCACTGCTGAGTGCCCAAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGGGTTAGATGTTCTTTTTAAGCATCACTGCTGAGTGCCCAAGG  840

seq1  GCCGTGATTTCACATAGGGGAGACAATAAAATCAAAGTAATAATAACTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGATTTCACATAGGGGAGACAATAAAATCAAAGTAATAATAACTCA  890

seq1  GTGTTTGAAACACAAATACAGGACACTAGTCCTGTCCAAATAGGCAAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAAACACAAATACAGGACACTAGTCCTGTCCAAATAGGCAAAGT  940

seq1  ACTTGCTAAATATCCATGAAAATGTCAAAAATCAAGAGGAAAAGACCAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAAATATCCATGAAAATGTCAAAAATCAAGAGGAAAAGACCAAA  990

seq1  CTAGTTCTCTCTCAGCTACCAATTGCAGCATTTCTATAAGTAAGTAATGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCTCTCAGCTACCAATTGCAGCATTTCTATAAGTAAGTAATGT  1040

seq1  ATGTGTATGAACATGCCTTTTGCATATGTTTCATACTTTGGAAATAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGAACATGCCTTTTGCATATGTTTCATACTTTGGAAATAAAAT  1090

seq1  TTTATTGCCAGTAAATTAAACCAAATTGCCAGCTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCCAGTAAATTAAACCAAATTGCCAGCTGAATTC  1130

seq1: chr2_69139066_69139977
seq2: B6Ng01-247G06.g_262_1169

seq1  TTCTGGTTTCTCCTTAGGTCTGAAACTTCCTTCTTCCTAGATGATGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTCTCCTTAGGTCTGAAACTTCCTTCTTCCTAGATGATGGTAA  50

seq1  ATTCCTGTGTACGGCAGTGACCTAGCTTTTATTCAAAGTGATAGTGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTGTACGGCAGTGACCTAGCTTTTATTCAAAGTGATAGTGTAAT  100

seq1  ACTAGAGGCTATTCTGAATGTCACTGAATAGGCAACATTCTTCCTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGGCTATTCTGAATGTCACTGAATAGGCAACATTCTTCCTGAATT  150

seq1  CCAAGCCCATTGTCTGCTCAAGGACTTTCTAGGACTGTTGGAACACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCATTGTCTGCTCAAGGACTTTCTAGGACTGTTGGAACACTGGC  200

seq1  AAAGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAAG  250

seq1  ATAATACTAAAAGAGAGCACGTGGATCGATACACCAGACTAATGCGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTAAAAGAGAGCACGTGGATCGATACACCAGACTAATGCGGGAA  300

seq1  TAGAATATGAGTATATGGGTTAAAGAGAACGTCAGACTCCAGGAGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATGAGTATATGGGTTAAAGAGAACGTCAGACTCCAGGAGTGAGT  350

seq1  TTCTGTGAAACTCTCTGTCTCATGAGTGGCTTTTAGGCCTCTCGGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAACTCTCTGTCTCATGAGTGGCTTTTAGGCCTCTCGGCCTGT  400

seq1  CAAGCTGACTTGACAGGAGTGCGTGGCAGGGAAACAAGGATTCCGGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGACTTGACAGGAGTGCGTGGCAGGGAAACAAGGATTCCGGGGTA  450

seq1  ACCCCAGCTACATGAGAGCGTAGTCAGTCTGAGATAGATGAGAGCCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCTACATGAGAGCGTAGTCAGTCTGAGATAGATGAGAGCCCATC  500

seq1  AGAACCAAAGCCAACCAGCCAACAACAATAAGAAGGAAGGGAGGAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAAGCCAACCAGCCAACAACAATAAGAAGGAAGGGAGGAAGTTA  550

seq1  ATATCGTGGAACAGCACTTAACTCAGAAATCTAAGACACATATAGTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTGGAACAGCACTTAACTCAGAAATCTAAGACACATATAGTACTC  600

seq1  AGATGATAAGAGTATATATTCTAACAGGGTTAAATTTTTCTAGATCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAAGAGTATATATTCTAACAGGGTTAAATTTTTCTAGATCTTTA  650

seq1  GCAGAACTGTGACTAGCAAAATATTAGACAGAGTTTATAAA-TACAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAGAACTGTGACTAGCAAAATATTAGACAGAGTTTATAAATTACAAAAT  700

seq1  AAATGAAAATAGCTTCAACAATATATTTATTATTTGCTCAGTCTAAATTT  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATGAAAATAGCTTC-ACAATATATTTATTATTTGCTCAGTCTAAATTT  749

seq1  CATAAAATCTGTAAATTAAAAAGCTGTTTTCCCCAACAGCGC-TATTCAT  798
      ||| ||||||||||||| |||||||||||||||| ||||||| |||||||
seq2  CAT-AAATCTGTAAATT-AAAAGCTGTTTTCCCC-ACAGCGCTTATTCAT  796

seq1  GTTCAAGTTTGATGGATGACATTTCAACTTTTATCCCTTCTCTA-TCTAA  847
      |||||   ||||| ||||||| |||||||||||||||||||||| |||||
seq2  GTTCA--GTTGAT-GATGACA-TTCAACTTTTATCCCTTCTCTATTCTAA  842

seq1  TTTATTCCTGAAAC--ATATACATTTTTGCACAGTAATAAAAATATTAAA  895
      |||||| |||||||  |||||||||||||||||||| |||||| ||| ||
seq2  TTTATT-CTGAAACATATATACATTTTTGCACAGTATTAAAAAAATTTAA  891

seq1  GAGTTATGAGTGATACT  912
      ||| |||||||||||||
seq2  GAGGTATGAGTGATACT  908