BAC Information

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BAC

Clone NameB6Ng01-247G19
Chromosome2 (Build37)
Map Location 153,304,739 - 153,305,886
singlet/doubletsinglet
Overlap gene8430427H17Rik
Upstream gene9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Downstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247G19.bB6Ng01-247G19.g
ACCGA055763GA055764
length1,2211,168
definitionB6Ng01-247G19.b B6Ng01-247G19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatggtcaatgaaattagaataaatctttttactttagcctcag
gtagactcttcagacaaggtcaaaaagcagccacatcaccacaatactac
aaaagcagtctctaagccatatactgaaattcttctccactgaagcttct
tgggccaggtctgaactgttcacattaccctcagcaaccaagtcttccat
attcctactaggatagctcagtgagctccacttaaagcattccactgttt
tccaaatccaaagcccccaaatccatattcttccaaacaaaagcatggtc
aggtctatcacagcaataccctccctactcctagtaccaacttctgactt
aggtagggttttactgctgtgaacaccatgaccaaggcaactcttttaag
gaaaacatttagttggggctgacttacagactcagaggttcagtccatta
tcatcaaagtgagagcatggcagcatctaggcaggcatggtacaggagga
gctgagatgagggttcaacatcttattccaaaggcaaacaggagaagact
ggcttccaggcaggtaggatgtgggtttaaaagcccaagactaaagtggc
acacctactctaacaaggccacacctccaaacagtgcaactccctgggct
aggcatactcaaactaccacaatattgattacatatatgaagaactgatt
tcagaaacacataaaaagggcccaataactcaaacctttccatcttggta
aaatgaacaaatgaagatttttacttaacttctaatttcttgagtctcag
gatacccacaggatgaaagctaaaagaaatgctcagagccctagaaaagg
aggagacgggtacctgaacgtaactaatcaggctggatgctttcctcttg
gatggttgtgagcttgttctgcatcctgtggagggcaagagtcagagtac
acatcaaaggaaagtctaaaggcttcttgctgacaggccttttctagtgt
ctccccaaaccagccatcaacagagaccatgcagtgccccaatattcttt
ctatgtactcaataagcaactgggcacagggctaggccaatggcctttct
tcctaacaaagctaagcagtacaatttgggggttctaaataaaaaaaggg
ggaaggcatccagtttcttcaagaaaagcacactgggcccaatcccatgt
gtagtagacacatatttccac
gaattctactgctgccagctgcaaactagagttaattttggtggcacagt
tgttacttctcagctgacttgatgctctgcagagcaggcagtctctttga
tgagttatctcccttctaaattccctgtctgattgccttgctctggaggt
caaggacaagggcgaaccctgtgtctctggctgggagagccacggtggag
gaagaagaccaggttggcccacgttagagatgagcactagagcgtggagg
gctttctgctaggtaagcatgcatcttcatcctagcctagagctctagga
gtcctttcagaggatgccaagttgggaatagtgagtctgttgcaggcaga
gccagagctggggctgactggccaaatgatggggtcccagactcccctga
gatattatatttattatataaagttgggcctcagaagagctgagtggtta
tggggatgagagatgcagtcggctaaaaggaaagtgaggttcatgccaga
ggaataaggttgcttcctcacctgcactggaaaggcacagactcaagaac
agctcctggtcaggctgctctgctgagggctgcacacagggtgagcatag
ctatcttggcttcctggccttcagagcgcacaggagtctgtctccagggt
gcaatggtgaccacaagatctgatcttggtttggtccccagcagtgggcc
agggagatatatcttctggctctgagtctcataggagaatgggagaggta
aaaagtccttggagctgtcagagggtggggcagtgtcagaggaagctggg
agttagttctgtactacataggaacccatatggacagcacaccctccctc
tttatattttccacagaatcttttggtttcaaccttttggttggtcagga
ctagaaatggaaccctctattttctgtgttgtgtacttggaatgccacag
ccccatggaacacgggacacacacacacattagacccacaagaacacaca
tagtacccccactccacattaggaccagaaaggcaatccttcacacgctt
cacaggatgctctattatcagaggattgttgcttcagatgttttttcaga
ccctgattcttgaaatagatgtccatgtgtactaaactgaattagtgacc
tgccctccatgtctccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153304739_153305886
seq2: B6Ng01-247G19.g_68_1235

seq1  GAATTCTACTGCTGCCAGCTGCAAACTAGAGTTAATTTTGGTGGCACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGCTGCCAGCTGCAAACTAGAGTTAATTTTGGTGGCACAGT  50

seq1  TGTTACTTCTCAGCTGACTTGATGCTCTGCAGAGCAGGCAGTCTCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTCTCAGCTGACTTGATGCTCTGCAGAGCAGGCAGTCTCTTTGA  100

seq1  TGAGTTATCTCCCTTCTAAATTCCCTGTCTGATTGCCTTGCTCTGGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATCTCCCTTCTAAATTCCCTGTCTGATTGCCTTGCTCTGGAGGT  150

seq1  CAAGGACAAGGGCGAACCCTGTGTCTCTGGCTGGGAGAGCCACGGTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAAGGGCGAACCCTGTGTCTCTGGCTGGGAGAGCCACGGTGGAG  200

seq1  GAAGAAGACCAGGTTGGCCCACGTTAGAGATGAGCACTAGAGCGTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGACCAGGTTGGCCCACGTTAGAGATGAGCACTAGAGCGTGGAGG  250

seq1  GCTTTCTGCTAGGTAAGCATGCATCTTCATCCTAGCCTAGAGCTCTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGCTAGGTAAGCATGCATCTTCATCCTAGCCTAGAGCTCTAGGA  300

seq1  GTCCTTTCAGAGGATGCCAAGTTGGGAATAGTGAGTCTGTTGCAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCAGAGGATGCCAAGTTGGGAATAGTGAGTCTGTTGCAGGCAGA  350

seq1  GCCAGAGCTGGGGCTGACTGGCCAAATGATGGGGTCCCAGACTCCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCTGGGGCTGACTGGCCAAATGATGGGGTCCCAGACTCCCCTGA  400

seq1  GATATTATATTTATTATATAAAGTTGGGCCTCAGAAGAGCTGAGTGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATATTTATTATATAAAGTTGGGCCTCAGAAGAGCTGAGTGGTTA  450

seq1  TGGGGATGAGAGATGCAGTCGGCTAAAAGGAAAGTGAGGTTCATGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGAGAGATGCAGTCGGCTAAAAGGAAAGTGAGGTTCATGCCAGA  500

seq1  GGAATAAGGTTGCTTCCTCACCTGCACTGGAAAGGCACAGACTCAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGGTTGCTTCCTCACCTGCACTGGAAAGGCACAGACTCAAGAAC  550

seq1  AGCTCCTGGTCAGGCTGCTCTGCTGAGGGCTGCACACAGGGTGAGCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGGTCAGGCTGCTCTGCTGAGGGCTGCACACAGGGTGAGCATAG  600

seq1  CTATCTTGGCTTCCTGGCCTTCAGAGCGCACAGGAGTCTGTCTCCAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGGCTTCCTGGCCTTCAGAGCGCACAGGAGTCTGTCTCCAGGGT  650

seq1  GCAATGGTGACCACAAGATCTGATCTTGGTTTGGTCCCCAGCAGTGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGTGACCACAAGATCTGATCTTGGTTTGGTCCCCAGCAGTGGGCC  700

seq1  AGGGAGATATATCTTCTGGCTCTGAGTCTCATAGGAGAATGGGAGAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATATATCTTCTGGCTCTGAGTCTCATAGGAGAATGGGAGAGGTA  750

seq1  AAAAGTCCTTGGAGCTGTCAGAGGGTGGGGCAGTGTCAGAGGAAGCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCTTGGAGCTGTCAGAGGGTGGGGCAGTGTCAGAGGAAGCTGGG  800

seq1  AGTTAGTTCTGTACTACATAGGAACCCATATGGACAGCACACCCTCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTCTGTACTACATAGGAACCCATATGGACAGCACACCCTCCCTC  850

seq1  -TTATATTTTCCACAGAATCTTTTGG-TTCAACC-TTTGGTTGGTCAGGA  897
       ||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTTATATTTTCCACAGAATCTTTTGGTTTCAACCTTTTGGTTGGTCAGGA  900

seq1  CTAGAAATGGAA-CCTCTA-TTTCTGTG-TGTGTACTTGG-ATGCCACAG  943
      |||||||||||| |||||| |||||||| ||||||||||| |||||||||
seq2  CTAGAAATGGAACCCTCTATTTTCTGTGTTGTGTACTTGGAATGCCACAG  950

seq1  GCCCATGGAACACGGGACACACACACACA-TAGACACACAAAGACACACA  992
       |||||||||||||||||||||||||||| ||||| |||||  |||||||
seq2  CCCCATGGAACACGGGACACACACACACATTAGACCCACAAGAACACACA  1000

seq1  TAG-ACACACAC-ACACAATAAGACCAGAAAGGCAATCC-TCACACGC-T  1038
      ||| || | |||  |||| || ||||||||||||||||| |||||||| |
seq2  TAGTACCCCCACTCCACATTAGGACCAGAAAGGCAATCCTTCACACGCTT  1050

seq1  CACAAGATGCTC--ATATCAGGAGGATGGTGGCTTTCAGATG---TTTCA  1083
      |||| |||||||   ||||| |||||| || || ||||||||   |||||
seq2  CACAGGATGCTCTATTATCA-GAGGATTGTTGC-TTCAGATGTTTTTTCA  1098

seq1  GACCCTG-TTCTAGAAATAGATG--CATGTGTACAAAACAGAGTAAGTGG  1130
      ||||||| |||| ||||||||||  ||||||||| |||| || | |||| 
seq2  GACCCTGATTCTTGAAATAGATGTCCATGTGTACTAAACTGAATTAGTGA  1148

seq1  ACTGCCCT-CATGT-TCCAG  1148
       ||||||| ||||| |||||
seq2  CCTGCCCTCCATGTCTCCAG  1168