BAC Information

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BAC

Clone NameB6Ng01-248D21
Chromosome2 (Build37)
Map Location 129,953,857 - 130,074,780
singlet/doubletdoublet
Overlap geneTgm6, Snrpb, Tmc2
Upstream geneChchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438
Downstream geneNol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248D21.bB6Ng01-248D21.g
ACCGA056368GA056369
length1,120371
definitionB6Ng01-248D21.b B6Ng01-248D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,073,667 - 130,074,780)(129,953,857 - 129,954,233)
sequence
gaattccatagccacaagtagctgcctgctaccacatggggcatctccct
ccttacagaaaacttactggatggttttagtggttcccctaaagccccag
agcctctcacaggctggcatgacccaggacctgtgggtagactgcctcag
gagaagaactgtccccagcaacaaagagcacacctgaaggggccacagtc
aaacgagggtgggagagacatgacggtgtaggccacaggcaggaggctga
ggaagagcaccaacagcagcaggcccatgtagaagttgttggatctggag
gctttaaacacacgttcgtggggaacgttgctgctcatcactgcccagca
ctggaagtacatggaggtcaacaggcgcaggacattgatgcccaccagtc
ctggagcatagaaggagcccatcctgaaaggtcagagacaggatacctgg
ttgacctggtagcaggcgagggagggctaatagaaggtgataggacggat
gggtggatcaggggcgtgcagtcaagttactttcctgaagggcccaagag
cagaggcctcctgtttagccaagatatttgccatcaggctggagccatcc
agtccccaagagagggagataactctgagcactcctggctgggaccctgg
ctaggactttatcattgcttcctatcggcagatcacatggtctctggcct
ccaggagcaccccaccaggctggtgtggcttacagacaatcctacagact
ctgcgcagcctccggaggaggaaactccttccttccctctcactttcctc
tcccccatttcctccgcccttctgttgccccccaaccccgtcccccgctc
ttctctctccattcctactttctctgcacacactggttacctttagtttt
tccgcttctcatccctgttcctgcttctttgggctttctgatgaagcagg
agctgagagagcgaagtgatttcgcttgcccctcccggctcaccgagaga
gtttggatgccttccagttctttgactccccccaatcattatgatccctc
aaggggaaataggaactctcactagatcatttctggttgaggatccaccc
gaccatttccactatatcaa
agtggaagagcaatgagatggtccctgggtataggcggtaacagtgctta
atgtgcaagcctggaaactgaagttcaattcccagaacccatgtaagggt
gcaaggagagaaccaaccccataaagtagcctctgctctccacatgtgta
ctgtgccccccacatgtgtgctatgccccccataccaccttatgcattat
gcatgcacatgcatgcccatacacatatcacacatgcagagagagagaga
gagagagagagagagagagagagagagagaattgaagagaaagaggccct
gaatttgagagagcaaggggtatatgggaggacctggtgggaggaaattg
ggggatatgatgtgattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130073667_130074780
seq2: B6Ng01-248D21.b_48_1167 (reverse)

seq1  TTGATATTAGTGGAAATGTGTTGGGTTTGATCTTCAACCAAGGAATGATC  50
      |||||| ||||||||||| || ||| | |||| |||||| || |||||||
seq2  TTGATA-TAGTGGAAATG-GTCGGG-TGGATCCTCAACC-AGAAATGATC  46

seq1  TGGTGAG-TTTCCTATTTCCCC-TGA-GGATCAT-ATGAT--GGGGGAGT  94
      | |||||  ||||||||||||| ||| ||||||| |||||  ||||||||
seq2  TAGTGAGAGTTCCTATTTCCCCTTGAGGGATCATAATGATTGGGGGGAGT  96

seq1  CAAAGAACTGGA--GCATCCAACTTCTCTCGGTGAGCCGGGAGGGGCCAG  142
      ||||||||||||  ||||||||  ||||||||||||||||||||||| ||
seq2  CAAAGAACTGGAAGGCATCCAAACTCTCTCGGTGAGCCGGGAGGGGCAAG  146

seq1  CG-AATCACCTCGCCTCTCTCAGCTCCTGCTTTCATCAGAAAG-CCAAAG  190
      || |||||| ||| |||||||||||||||| |||||||||||| ||||||
seq2  CGAAATCACTTCG-CTCTCTCAGCTCCTGC-TTCATCAGAAAGCCCAAAG  194

seq1  -AGCAGG-ACA-GGATGAGAAGCGGAAAAACTAAAGGTAACCAGTGTGTT  237
       |||||| ||| |||||||||||||||||||||||||||||||||||| |
seq2  AAGCAGGAACAGGGATGAGAAGCGGAAAAACTAAAGGTAACCAGTGTG-T  243

seq1  GCAGAGAAAGTAGGAATGGAGAGAGAAGAGCGGGGGACGGGGTTGGGGGG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAAGTAGGAATGGAGAGAGAAGAGCGGGGGACGGGGTTGGGGGG  293

seq1  CAACAGAAGGGCGGAGGAAATGGGGGAGAGGAAAGTGAGAGGGAAGGAAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGGGCGGAGGAAATGGGGGAGAGGAAAGTGAGAGGGAAGGAAG  343

seq1  GAGTTTCCTCCTCCGGAGGCTGCGCAGAGTCTGTAGGATTGTCTGTAAGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCTCCTCCGGAGGCTGCGCAGAGTCTGTAGGATTGTCTGTAAGC  393

seq1  CACACCAGCCTGGTGGGGTGCTCCTGGAGGCCAGAGACCATGTGATCTGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCCTGGTGGGGTGCTCCTGGAGGCCAGAGACCATGTGATCTGC  443

seq1  CGATAGGAAGCAATGATAAAGTCCTAGCCAGGGTCCCAGCCAGGAGTGCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGGAAGCAATGATAAAGTCCTAGCCAGGGTCCCAGCCAGGAGTGCT  493

seq1  CAGAGTTATCTCCCTCTCTTGGGGACTGGATGGCTCCAGCCTGATGGCAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTATCTCCCTCTCTTGGGGACTGGATGGCTCCAGCCTGATGGCAA  543

seq1  ATATCTTGGCTAAACAGGAGGCCTCTGCTCTTGGGCCCTTCAGGAAAGTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGGCTAAACAGGAGGCCTCTGCTCTTGGGCCCTTCAGGAAAGTA  593

seq1  ACTTGACTGCACGCCCCTGATCCACCCATCCGTCCTATCACCTTCTATTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTGCACGCCCCTGATCCACCCATCCGTCCTATCACCTTCTATTA  643

seq1  GCCCTCCCTCGCCTGCTACCAGGTCAACCAGGTATCCTGTCTCTGACCTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCTCGCCTGCTACCAGGTCAACCAGGTATCCTGTCTCTGACCTT  693

seq1  TCAGGATGGGCTCCTTCTATGCTCCAGGACTGGTGGGCATCAATGTCCTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGGCTCCTTCTATGCTCCAGGACTGGTGGGCATCAATGTCCTG  743

seq1  CGCCTGTTGACCTCCATGTACTTCCAGTGCTGGGCAGTGATGAGCAGCAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTTGACCTCCATGTACTTCCAGTGCTGGGCAGTGATGAGCAGCAA  793

seq1  CGTTCCCCACGAACGTGTGTTTAAAGCCTCCAGATCCAACAACTTCTACA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCCACGAACGTGTGTTTAAAGCCTCCAGATCCAACAACTTCTACA  843

seq1  TGGGCCTGCTGCTGTTGGTGCTCTTCCTCAGCCTCCTGCCTGTGGCCTAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGCTGCTGTTGGTGCTCTTCCTCAGCCTCCTGCCTGTGGCCTAC  893

seq1  ACCGTCATGTCTCTCCCACCCTCGTTTGACTGTGGCCCCTTCAGGTGTGC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCATGTCTCTCCCACCCTCGTTTGACTGTGGCCCCTTCAGGTGTGC  943

seq1  TCTTTGTTGCTGGGGACAGTTCTTCTCCTGAGGCAGTCTACCCACAGGTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGCTGGGGACAGTTCTTCTCCTGAGGCAGTCTACCCACAGGTC  993

seq1  CTGGGTCATGCCAGCCTGTGAGAGGCTCTGGGGCTTTAGGGGAACCACTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCATGCCAGCCTGTGAGAGGCTCTGGGGCTTTAGGGGAACCACTA  1043

seq1  AAACCATCCAGTAAGTTTTCTGTAAGGAGGGAGATGCCCCATGTGGTAGC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCCAGTAAGTTTTCTGTAAGGAGGGAGATGCCCCATGTGGTAGC  1093

seq1  AGGCAGCTACTTGTGGCTATGGAATTC  1114
      |||||||||||||||||||||||||||
seq2  AGGCAGCTACTTGTGGCTATGGAATTC  1120

seq1: chr2_129953857_129954233
seq2: B6Ng01-248D21.g_62_438

seq1  GAATTCAGTGGAAGAGCAATGAGATGGTCCCTGGGTATAGGCGGTAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGAAGAGCAATGAGATGGTCCCTGGGTATAGGCGGTAACAG  50

seq1  TGCTTAATGTGCAAGCCTGGAAACTGAAGTTCAATTCCCAGAACCCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATGTGCAAGCCTGGAAACTGAAGTTCAATTCCCAGAACCCATGT  100

seq1  AAGGGTGCAAGGAGAGAACCAACCCCATAAAGTAGCCTCTGCTCTCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCAAGGAGAGAACCAACCCCATAAAGTAGCCTCTGCTCTCCACA  150

seq1  TGTGTACTGTGCCCCCCACATGTGTGCTATGCCCCCCATACCACCTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTGTGCCCCCCACATGTGTGCTATGCCCCCCATACCACCTTATG  200

seq1  CATTATGCATGCACATGCATGCCCATACACATATCACACATGCAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCATGCACATGCATGCCCATACACATATCACACATGCAGAGAGA  250

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTGAAGAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTGAAGAGAAAGA  300

seq1  GGCCCTGAATTTGAGAGAGCAAGGGGTATATGGGAGGACCTGGTGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAATTTGAGAGAGCAAGGGGTATATGGGAGGACCTGGTGGGAGG  350

seq1  AAATTGGGGGATATGATGTGATTATAT  377
      |||||||||||||||||||||||||||
seq2  AAATTGGGGGATATGATGTGATTATAT  377