BAC Information

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BAC

Clone NameB6Ng01-248G11
Chromosome2 (Build37)
Map Location 85,513,414 - 85,685,951
singlet/doubletdoublet
Overlap geneOlfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019
Upstream geneTxndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325
Downstream geneOlfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248G11.bB6Ng01-248G11.g
ACCGA056492GA056493
length1,1301,113
definitionB6Ng01-248G11.b B6Ng01-248G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,684,832 - 85,685,951)(85,513,414 - 85,514,522)
sequence
gaattcaatgacagcctgttttacataaagaatttcactaaagtcaggga
tgcagagtgagaccttctatcacaaaatgaaatgaaatgaaatgaaatga
aatgaaatgaaatgaaatgaaatgaaatgaaatgaaataatgaaataact
ttcagtgtttacaacatatcatcatcacagtacagtatgggcaaataaac
ctgcacatgtttttatcactgatctcaaaggaaaataaaattccttgggg
gatggcacttatgcatatctctgagtctctgctgaatgtagaaagtcatt
tcatgatgtttcttctagaaaacaatgcatgattctgagaattaaatacc
cccttcacacaggcataacagcaggatgaacaaggggctctgaaacaaat
gcaaggaggactcacagtctttcaattagttacagaacattcactcaaca
agactgtccatctaagaagaagaaagcttcagcctgctactgacatgtag
aaaacaggttagctttctattggggcagttctgggtaatgtaatctactc
agagcagattcacattggccagtgctgctctgactaccagctcttatagt
caccaggcccttataccacattccaacaagacaagagccttgttgtttta
atttaatttatcattagaatctataaggtgatagagctaaaggacttctc
caccacatccaatttccagatcagaaatccacacaataaagaacagttca
tagaatggaaacgattgctgcaaatgctggtgcaccctctctagacactt
aatacatgttctttcacagaaagtctgttttcagctgaaacatataaatc
tgaaacgtatttgcctaccacaaacttcaacatttaagtatctagacttt
gcttaaatacttctgtttgtggctaaaatatgatcagtacttttattttc
ccaataggctactatttttttcaaagggaattgactattttattatttga
gactaaaagaaagcaatatattatataatatatgtatatagtatatagta
ttatatattgcagaattacacatgaattatatatggaacattacctgaac
ataaataacgatatggttgtctataacata
gaattcactagagggttaaggcattgagttcacatgaaggtttaaggaaa
ttggctcattgtcaggggtaccaactatttgatcctccagggtttctggc
agcatcataaacagctttgttagggatggaaatatgctgacaattcccta
gcttttggccaggcctaagagacaagcaggcagctgctggatttggacag
atacaggctaaagaatctgtttaaagtttattttatctaaagttgtcttt
cccctaattgagtcattttaatatgcaacctgactgagggtcctgcaaag
tatctactcttcctgggagactacacaatagttagggtgataaataacca
aaaggatgcataattttcatatcttacaaagtgttttattgatattttta
gctgcatctcatcatattgacaactcctaaatactttacctgatactaca
atgatataaaagttatatgatgtaaaaagagtgcttttgcctattatatt
tatgctttattaaggaacttattggagctctcactgtattaaagtaaaac
tccacagtcttacatacaaacccaagaatcttaggagtctaaaactactt
ttaagagaacaacaatagtttgaccaacttaaattaaaactatgttcttt
caaactgtaactttattttcctcaaattctttaaaaattaaccaacaaga
tgaattttatgaaaaactaagagacaaaatataatatgtaagagcattaa
gtgttcaagcacataaactataggtattgaatgaattatattatacatac
aatacaaaataataattaaaagtcatttgctcatcatttcaccattcaaa
gggtcacttgtttaatttaagtgaaatgcataaatgtgagaacaaatgga
aaatgagttattggagaatatgttaacagcacttagcccaaaagtggatc
atcttcatgtgtgtggtcgttattgttctgtgttgctttctgaagggcat
ctttgacatcttttgttttcttaggctaataagatgaagagggtgagcat
ggggttgactacgtataagaagaggccagccactgttccttttctagaaa
gtagttgacctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85684832_85685951
seq2: B6Ng01-248G11.b_47_1176 (reverse)

seq1  TATG-TATAGACACATATACATTTATTTATGTTCAGGTAAATGTT-CATA  48
      |||| ||||||||   |||   |||||||||||||||| |||||| ||||
seq2  TATGTTATAGACAACCATATCGTTATTTATGTTCAGGT-AATGTTCCATA  49

seq1  TAT-ATTCATGTGTATATCTGC-ATATAT-ATACTATATTACTATATACA  95
      ||| |||||||||||  ||||| |||||| |||||||| |||||||||||
seq2  TATAATTCATGTGTAATTCTGCAATATATAATACTATA-TACTATATACA  98

seq1  TATA-TATAT-ATATATTGCTTTCTTTTAGTCTCAAATAAT-AAATAGTC  142
      |||| ||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TATATTATATAATATATTGCTTTCTTTTAGTCTCAAATAATAAAATAGTC  148

seq1  AATT-CCTTTG-AAAAAATAGTAGCCTATTGGGAAA--TAAAGTACTGAT  188
      |||| |||||| ||||||||||||||||||||||||   |||||||||||
seq2  AATTCCCTTTGAAAAAAATAGTAGCCTATTGGGAAAATAAAAGTACTGAT  198

seq1  CATATTTTAGCCACAAACAGAAGTATTTAAGCAAAGTCTAGATACTTAAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAGCCACAAACAGAAGTATTTAAGCAAAGTCTAGATACTTAAA  248

seq1  TGTTGAAGTTTGTGGTAGGCAAATACGTTTCAGATTTATATGTTTCAGCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTTTGTGGTAGGCAAATACGTTTCAGATTTATATGTTTCAGCT  298

seq1  GAAAACAGACTTTCTGTGAAAGAACATGTATTAAGTGTCTAGAGAGGGTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGACTTTCTGTGAAAGAACATGTATTAAGTGTCTAGAGAGGGTG  348

seq1  CACCAGCATTTGCAGCAATCGTTTCCATTCTATGAACTGTTCTTTATTGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCATTTGCAGCAATCGTTTCCATTCTATGAACTGTTCTTTATTGT  398

seq1  GTGGATTTCTGATCTGGAAATTGGATGTGGTGGAGAAGTCCTTTAGCTCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCTGATCTGGAAATTGGATGTGGTGGAGAAGTCCTTTAGCTCT  448

seq1  ATCACCTTATAGATTCTAATGATAAATTAAATTAAAACAACAAGGCTCTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTATAGATTCTAATGATAAATTAAATTAAAACAACAAGGCTCTT  498

seq1  GTCTTGTTGGAATGTGGTATAAGGGCCTGGTGACTATAAGAGCTGGTAGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTTGGAATGTGGTATAAGGGCCTGGTGACTATAAGAGCTGGTAGT  548

seq1  CAGAGCAGCACTGGCCAATGTGAATCTGCTCTGAGTAGATTACATTACCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCACTGGCCAATGTGAATCTGCTCTGAGTAGATTACATTACCC  598

seq1  AGAACTGCCCCAATAGAAAGCTAACCTGTTTTCTACATGTCAGTAGCAGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCCCCAATAGAAAGCTAACCTGTTTTCTACATGTCAGTAGCAGG  648

seq1  CTGAAGCTTTCTTCTTCTTAGATGGACAGTCTTGTTGAGTGAATGTTCTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTTCTTCTTCTTAGATGGACAGTCTTGTTGAGTGAATGTTCTG  698

seq1  TAACTAATTGAAAGACTGTGAGTCCTCCTTGCATTTGTTTCAGAGCCCCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATTGAAAGACTGTGAGTCCTCCTTGCATTTGTTTCAGAGCCCCT  748

seq1  TGTTCATCCTGCTGTTATGCCTGTGTGAAGGGGGTATTTAATTCTCAGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCCTGCTGTTATGCCTGTGTGAAGGGGGTATTTAATTCTCAGAA  798

seq1  TCATGCATTGTTTTCTAGAAGAAACATCATGAAATGACTTTCTACATTCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATTGTTTTCTAGAAGAAACATCATGAAATGACTTTCTACATTCA  848

seq1  GCAGAGACTCAGAGATATGCATAAGTGCCATCCCCCAAGGAATTTTATTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTCAGAGATATGCATAAGTGCCATCCCCCAAGGAATTTTATTT  898

seq1  TCCTTTGAGATCAGTGATAAAAACATGTGCAGGTTTATTTGCCCATACTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGATCAGTGATAAAAACATGTGCAGGTTTATTTGCCCATACTG  948

seq1  TACTGTGATGATGATATGTTGTAAACACTGAAAGTTATTTCATTATTTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGATGATGATATGTTGTAAACACTGAAAGTTATTTCATTATTTCA  998

seq1  TTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCA  1048

seq1  TTTCATTTTGTGATAGAAGGTCTCACTCTGCATCCCTGACTTTAGTGAAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTGTGATAGAAGGTCTCACTCTGCATCCCTGACTTTAGTGAAA  1098

seq1  TTCTTTATGTAAAACAGGCTGTCATTGAATTC  1120
      ||||||||||||||||||||||||||||||||
seq2  TTCTTTATGTAAAACAGGCTGTCATTGAATTC  1130

seq1: chr2_85513414_85514522
seq2: B6Ng01-248G11.g_64_1176

seq1  GAATTCACTAGAGGGTTAAGGCATTGAGTTCACATGAAGGTTTAAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAGGGTTAAGGCATTGAGTTCACATGAAGGTTTAAGGAAA  50

seq1  TTGGCTCATTGTCAGGGGTACCAACTATTTGATCCTCCAGGGTTTCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCATTGTCAGGGGTACCAACTATTTGATCCTCCAGGGTTTCTGGC  100

seq1  AGCATCATAAACAGCTTTGTTAGGGATGGAAATATGCTGACAATTCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATAAACAGCTTTGTTAGGGATGGAAATATGCTGACAATTCCCTA  150

seq1  GCTTTTGGCCAGGCCTAAGAGACAAGCAGGCAGCTGCTGGATTTGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCCAGGCCTAAGAGACAAGCAGGCAGCTGCTGGATTTGGACAG  200

seq1  ATACAGGCTAAAGAATCTGTTTAAAGTTTATTTTATCTAAAGTTGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCTAAAGAATCTGTTTAAAGTTTATTTTATCTAAAGTTGTCTTT  250

seq1  CCCCTAATTGAGTCATTTTAATATGCAACCTGACTGAGGGTCCTGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATTGAGTCATTTTAATATGCAACCTGACTGAGGGTCCTGCAAAG  300

seq1  TATCTACTCTTCCTGGGAGACTACACAATAGTTAGGGTGATAAATAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTCTTCCTGGGAGACTACACAATAGTTAGGGTGATAAATAACCA  350

seq1  AAAGGATGCATAATTTTCATATCTTACAAAGTGTTTTATTGATATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGCATAATTTTCATATCTTACAAAGTGTTTTATTGATATTTTTA  400

seq1  GCTGCATCTCATCATATTGACAACTCCTAAATACTTTACCTGATACTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCTCATCATATTGACAACTCCTAAATACTTTACCTGATACTACA  450

seq1  ATGATATAAAAGTTATATGATGTAAAAAGAGTGCTTTTGCCTATTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAAAAGTTATATGATGTAAAAAGAGTGCTTTTGCCTATTATATT  500

seq1  TATGCTTTATTAAGGAACTTATTGGAGCTCTCACTGTATTAAAGTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTATTAAGGAACTTATTGGAGCTCTCACTGTATTAAAGTAAAAC  550

seq1  TCCACAGTCTTACATACAAACCCAAGAATCTTAGGAGTCTAAAACTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTCTTACATACAAACCCAAGAATCTTAGGAGTCTAAAACTACTT  600

seq1  TTAAGAGAACAACAATAGTTTGACCAACTTAAATTAAAACTATGTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAACAACAATAGTTTGACCAACTTAAATTAAAACTATGTTCTTT  650

seq1  CAAACTGTAACTTTATTTTCCTCAAATTCTTTAAAAATTAACCAACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTAACTTTATTTTCCTCAAATTCTTTAAAAATTAACCAACAAGA  700

seq1  TGAATTTTATGAAAAACTAAGAGACAAAATATAATATGTAAGAGCATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTATGAAAAACTAAGAGACAAAATATAATATGTAAGAGCATTAA  750

seq1  GTGTTCAAGCACATAAACTATAGGTATTGAATGAATTATATTATACATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAGCACATAAACTATAGGTATTGAATGAATTATATTATACATAC  800

seq1  AATACAAAATAATAATTAAAAGTCATTTGCTCATCATTTCACCATTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAATAATAATTAAAAGTCATTTGCTCATCATTTCACCATTCAAA  850

seq1  GGGTCACTTGTTTAATTTAAGTGAAATGCATAAATGTGAGAACAAATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACTTGTTTAATTTAAGTGAAATGCATAAATGTGAGAACAAATGGA  900

seq1  AAATGGAGTTATTGGGAGAATATGTTAACAGCACTTAG-CCAAAAGT-GA  948
      |||| |||||||| |||||||||||||||||||||||| |||||||| ||
seq2  AAAT-GAGTTATT-GGAGAATATGTTAACAGCACTTAGCCCAAAAGTGGA  948

seq1  TCATCTTCATGTGTGTGGTCG-TATTG-TCTGTGTTGCTTTTCTGAA-GG  995
      ||||||||||||||||||||| ||||| |||||||||| |||||||| ||
seq2  TCATCTTCATGTGTGTGGTCGTTATTGTTCTGTGTTGC-TTTCTGAAGGG  997

seq1  CATCTTTGACATCTTT--GTTTCTTAGGCTA--TAGATG-AGAGGGTTGA  1040
      ||||||||||||||||   ||||||||||||   ||||| |||||| |||
seq2  CATCTTTGACATCTTTTGTTTTCTTAGGCTAATAAGATGAAGAGGG-TGA  1046

seq1  GCAATGGGTTGACTACAGTAT-AGAAGAGGGCAGCCACTTTGTCCTTTTC  1089
      |||  ||||||||||| |||| |||||||| |||||||| | ||||||||
seq2  GCATGGGGTTGACTAC-GTATAAGAAGAGGCCAGCCACTGT-TCCTTTTC  1094

seq1  TAGAGAGTAGGTTGAACTAG  1109
      |||| |||| ||||| ||||
seq2  TAGAAAGTA-GTTGACCTAG  1113