BAC Information

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BAC

Clone NameB6Ng01-248I13
Chromosome2 (Build37)
Map Location 112,361,364 - 112,519,285
singlet/doubletdoublet
Overlap geneAven, Ryr3
Upstream geneOlfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5
Downstream gene4930563P21Rik, Fmn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248I13.bB6Ng01-248I13.g
ACCGA056586GA056587
length1,1511,170
definitionB6Ng01-248I13.b B6Ng01-248I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,518,145 - 112,519,285)(112,361,364 - 112,362,515)
sequence
gaattcctttatttcatgtatcgtttctccacataccaagccagatccca
aagcagtcctagtcttgattttcctgtaagaatttgtattgctccgtggt
ggagaggccgtgtggcacgcctgggctatcgaataccagcttcagccatg
gaaacaggccactggttctgtgatagacgctcttccacatgttaactggt
atcccagtggaagggcactgttgcttgtgggagttattttacctattata
aaaatcattccttttgttgtgactattgtccctttggagcagaatcaagt
aagccaataaatactgtggatgtctgtgctgtgtgtctagctactgtggt
tttgtgtgcatgtacagaagagaaggctcgggtttgggctggtctttaat
ggccatctggtttggttttgcttaacatattttttgtttttgttctttta
ctgttctttgaaatgtagtaaggcccaacctgtacggacagggcctcaag
gaagcaagctacccctgagctgaggcagttcctttcagagagtcactgag
cccctctctttatttcaacatcatctcctagtctggaggacaggaccagg
aacggaagaagacaaagaggcgaggagacttgtattccatccagacgtcc
cttatcgtggctgcgctcaagaaaatgctgcccattggtctgaacatgtg
tactccaggcgaccaggagctcatctcactcgcaaaatcacgatacagct
gtgtaagctgcttctgtggtccagctgagtgcagagggaaggctgtgagg
agtgggcggtactcttccttttacggttggtagtcctctgaggggcaggg
gttgaggtacacacttttgtaaagctgtctgggagtcagtaacttggggt
aagtctcatttacatctctcctgttcttctaagaaagttccccgtaaatt
gtgcacctgaccaagccatacttcctgtaccctatgctgcattttaaagt
tgatccacaaggaataaaatttcccatctttccacaagagggaccacctg
gatgaaggagttcaggaacatcttcgaataaccctgcaaccttgcagaga
cggtgatgcttcatctcctcacaggcgttcctgcctagcctgagacctgt
c
gaattcttttgattgaaggcttccgtgatctcatttttggtatctgtgtg
ccatatatgtgtgtagtgtccatgggggccagcagagggcatcagattcc
ttcaaactggagttacagatgcttgtatacttcggcatgtatgctaggaa
ttgaacctgggttctctggaagagtggctgagatctcaacctctctagcc
catagatttctgactgcctattgtgacgtacatagtttcctgtgttcata
tgtactttgtgtgttctcagggctttcctgctaggaattcttcatgtatt
taacattcagtgtgtgttgctgctgcctgaggtggttacatgataggtaa
tatatctggagtgttggtatgtggagccacatcagaacatccttatgtaa
gcgaagtatggggagaccactttagcacaggctgtgtcagttcaggcttg
tcaagttaagacattctcaatgcaaagatcttggaaggtatgctgttagc
agaacaataggaaatccagtctgtgtggcagtgtatgtgcctgtcaccta
acactgtagtttctaaataagaatttgttactgctgtcacttaaaggcat
cattagcctgaccatggggttgccatgtaccttctcttggctccctctgg
ttgctgtgagccacacgagtttactgtgtatcattttgaaaagcagcatt
gatgcagttaggaagtcttaatttcaatttttatccttatgcttgttttt
cttgagatctttgaggtcatagtggaaaagtgagttagatttcatttttg
aaaactggagaatagacaggagcaccattgcgtgggacttcatggctaga
gaagccgttgctctgactgggttctcttgatgccaggcttaggtctcttg
aatctccctgcttctctgttaagtaggcagaaagaaattcgttagaggga
aggatgtgcaggcgttgtaagttgttttcttctggagcaaccgagcgccc
tgttttcttccttgcttgtgcccctgagaatcctctggagggtgttcctg
atgcttctttggtgtgtggaagtctgtgttgttttggagccattggcacc
tcttacatggagtgctcaattctcattggcaatctcagccattttgagcc
aaggtattcacttgtgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_112518145_112519285
seq2: B6Ng01-248I13.b_48_1198 (reverse)

seq1  GACAGGTCCTCCAGCTA-GCAGGACAGCCTGTGA-GAGATGAAGCATCAC  48
      ||||||| |||  |||| ||||||  |||||||| |||||||||||||||
seq2  GACAGGT-CTCAGGCTAGGCAGGAACGCCTGTGAGGAGATGAAGCATCAC  49

seq1  CTTCTCCTGCA--GGTGCA-GGTTATTCCGAAGATGTTCCTTGACTTCTT  95
      | ||| |||||  | |||| ||||||| |||||||||||||  ||| |||
seq2  CGTCT-CTGCAAGGTTGCAGGGTTATT-CGAAGATGTTCCTGAACTCCTT  97

seq1  CAT-CAG--TGTCCCTC-TGTGGAAAGATGGGAAATTTTATTCC-TGTGG  140
      ||| |||   ||||||| |||||||||||||||||||||||||| |||||
seq2  CATCCAGGTGGTCCCTCTTGTGGAAAGATGGGAAATTTTATTCCTTGTGG  147

seq1  ATCACCTTTAAAATGCAGCATAGGGTACAGGGAAGTATGGC-TGGTCA-G  188
      |||| |||||||||||||||||||||||| ||||||||||| |||||| |
seq2  ATCAACTTTAAAATGCAGCATAGGGTACA-GGAAGTATGGCTTGGTCAGG  196

seq1  TGCACAATTTAACGGGGAACTTTCTTAGAAGAACAGGAGAGATGTAAATG  238
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATTT-ACGGGGAACTTTCTTAGAAGAACAGGAGAGATGTAAATG  245

seq1  AGACTTACCCCAAGTTACTGACTCCCAGACAGCTTTAC-AAAGTGTGTAC  287
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGACTTACCCCAAGTTACTGACTCCCAGACAGCTTTACAAAAGTGTGTAC  295

seq1  CTCAACCCCTGCCCCTCAGAGGACTACC-ACCGT-AAAGGAAGAGTACCG  335
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CTCAACCCCTGCCCCTCAGAGGACTACCAACCGTAAAAGGAAGAGTACCG  345

seq1  CCCACTCCTCACAGCCTTCCCTCTGCACTCAGCTGGACCACAGAAGCAGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTCACAGCCTTCCCTCTGCACTCAGCTGGACCACAGAAGCAGC  395

seq1  TTACACAGCTGTATCGTGATTTTGCGAGTGAGATGAGCTCCTGGTCGCCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCTGTATCGTGATTTTGCGAGTGAGATGAGCTCCTGGTCGCCT  445

seq1  GGAGTACACATGTTCAGACCAATGGGCAGCATTTTCTTGAGCGCAGCCAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACACATGTTCAGACCAATGGGCAGCATTTTCTTGAGCGCAGCCAC  495

seq1  GATAAGGGACGTCTGGATGGAATACAAGTCTCCTCGCCTCTTTGTCTTCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGGACGTCTGGATGGAATACAAGTCTCCTCGCCTCTTTGTCTTCT  545

seq1  TCCGTTCCTGGTCCTGTCCTCCAGACTAGGAGATGATGTTGAAATAAAGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCCTGGTCCTGTCCTCCAGACTAGGAGATGATGTTGAAATAAAGA  595

seq1  GAGGGGCTCAGTGACTCTCTGAAAGGAACTGCCTCAGCTCAGGGGTAGCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTCAGTGACTCTCTGAAAGGAACTGCCTCAGCTCAGGGGTAGCT  645

seq1  TGCTTCCTTGAGGCCCTGTCCGTACAGGTTGGGCCTTACTACATTTCAAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTGAGGCCCTGTCCGTACAGGTTGGGCCTTACTACATTTCAAA  695

seq1  GAACAGTAAAAGAACAAAAACAAAAAATATGTTAAGCAAAACCAAACCAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTAAAAGAACAAAAACAAAAAATATGTTAAGCAAAACCAAACCAG  745

seq1  ATGGCCATTAAAGACCAGCCCAAACCCGAGCCTTCTCTTCTGTACATGCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCATTAAAGACCAGCCCAAACCCGAGCCTTCTCTTCTGTACATGCA  795

seq1  CACAAAACCACAGTAGCTAGACACACAGCACAGACATCCACAGTATTTAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACCACAGTAGCTAGACACACAGCACAGACATCCACAGTATTTAT  845

seq1  TGGCTTACTTGATTCTGCTCCAAAGGGACAATAGTCACAACAAAAGGAAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACTTGATTCTGCTCCAAAGGGACAATAGTCACAACAAAAGGAAT  895

seq1  GATTTTTATAATAGGTAAAATAACTCCCACAAGCAACAGTGCCCTTCCAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATAATAGGTAAAATAACTCCCACAAGCAACAGTGCCCTTCCAC  945

seq1  TGGGATACCAGTTAACATGTGGAAGAGCGTCTATCACAGAACCAGTGGCC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATACCAGTTAACATGTGGAAGAGCGTCTATCACAGAACCAGTGGCC  995

seq1  TGTTTCCATGGCTGAAGCTGGTATTCGATAGCCCAGGCGTGCCACACGGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATGGCTGAAGCTGGTATTCGATAGCCCAGGCGTGCCACACGGC  1045

seq1  CTCTCCACCACGGAGCAATACAAATTCTTACAGGAAAATCAAGACTAGGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACCACGGAGCAATACAAATTCTTACAGGAAAATCAAGACTAGGA  1095

seq1  CTGCTTTGGGATCTGGCTTGGTATGTGGAGAAACGATACATGAAATAAAG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGGGATCTGGCTTGGTATGTGGAGAAACGATACATGAAATAAAG  1145

seq1  GAATTC  1141
      ||||||
seq2  GAATTC  1151

seq1: chr2_112361364_112362515
seq2: B6Ng01-248I13.g_66_1235

seq1  GAATTCTTTTGATTGAAGGCTTCCGTGATCTCATTTTTGGTATCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGATTGAAGGCTTCCGTGATCTCATTTTTGGTATCTGTGTG  50

seq1  CCATATATGTGTGTAGTGTCCATGGGGGCCAGCAGAGGGCATCAGATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATGTGTGTAGTGTCCATGGGGGCCAGCAGAGGGCATCAGATTCC  100

seq1  TTCAAACTGGAGTTACAGATGCTTGTATACTTCGGCATGTATGCTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGGAGTTACAGATGCTTGTATACTTCGGCATGTATGCTAGGAA  150

seq1  TTGAACCTGGGTTCTCTGGAAGAGTGGCTGAGATCTCAACCTCTCTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTGGGTTCTCTGGAAGAGTGGCTGAGATCTCAACCTCTCTAGCC  200

seq1  CATAGATTTCTGACTGCCTATTGTGACGTACATAGTTTCCTGTGTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTCTGACTGCCTATTGTGACGTACATAGTTTCCTGTGTTCATA  250

seq1  TGTACTTTGTGTGTTCTCAGGGCTTTCCTGCTAGGAATTCTTCATGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTGTGTGTTCTCAGGGCTTTCCTGCTAGGAATTCTTCATGTATT  300

seq1  TAACATTCAGTGTGTGTTGCTGCTGCCTGAGGTGGTTACATGATAGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCAGTGTGTGTTGCTGCTGCCTGAGGTGGTTACATGATAGGTAA  350

seq1  TATATCTGGAGTGTTGGTATGTGGAGCCACATCAGAACATCCTTATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGAGTGTTGGTATGTGGAGCCACATCAGAACATCCTTATGTAA  400

seq1  GCGAAGTATGGGGAGACCACTTTAGCACAGGCTGTGTCAGTTCAGGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGTATGGGGAGACCACTTTAGCACAGGCTGTGTCAGTTCAGGCTTG  450

seq1  TCAAGTTAAGACATTCTCAATGCAAAGATCTTGGAAGGTATGCTGTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAAGACATTCTCAATGCAAAGATCTTGGAAGGTATGCTGTTAGC  500

seq1  AGAACAATAGGAAATCCAGTCTGTGTGGCAGTGTATGTGCCTGTCACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATAGGAAATCCAGTCTGTGTGGCAGTGTATGTGCCTGTCACCTA  550

seq1  ACACTGTAGTTTCTAAATAAGAATTTGTTACTGCTGTCACTTAAAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGTTTCTAAATAAGAATTTGTTACTGCTGTCACTTAAAGGCAT  600

seq1  CATTAGCCTGACCATGGGGTTGCCATGTACCTTCTCTTGGCTCCCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCCTGACCATGGGGTTGCCATGTACCTTCTCTTGGCTCCCTCTGG  650

seq1  TTGCTGTGAGCCACACGAGTTTACTGTGTATCATTTTGAAAAGCAGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGAGCCACACGAGTTTACTGTGTATCATTTTGAAAAGCAGCATT  700

seq1  GATGCAGTTAGGAAGTCTTAATTTCAATTTTTATCCTTATGCTTGTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTTAGGAAGTCTTAATTTCAATTTTTATCCTTATGCTTGTTTTT  750

seq1  CTTGAGATCTTTGAGGTCATAGTGGAAAAGTGAGTTAGATTTCA-TTTTG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGAGATCTTTGAGGTCATAGTGGAAAAGTGAGTTAGATTTCATTTTTG  800

seq1  AAAACTGGAGAATAGACAGGAGCACCATTGCGTGGGACTTCATGGCTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGAATAGACAGGAGCACCATTGCGTGGGACTTCATGGCTAGA  850

seq1  GAAGCCGTTGCTCTGACTGGGTTCTCTTGATGCCAGGCTTAGGTCTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGTTGCTCTGACTGGGTTCTCTTGATGCCAGGCTTAGGTCTCTTG  900

seq1  AATCTCCCTGCTCTTCTGTTAAGTAGGCAG-AAGAAA-TCGTTAGAGGGA  947
      ||||||||||||  |||||||||||||||| |||||| ||||||||||||
seq2  AATCTCCCTGCTTCTCTGTTAAGTAGGCAGAAAGAAATTCGTTAGAGGGA  950

seq1  A-GATGTGCAGGCG-TGTAAGTTGTTTTC-TCTGGAGC-ACCGAGCG-CC  992
      | |||||||||||| |||||||||||||| |||||||| |||||||| ||
seq2  AGGATGTGCAGGCGTTGTAAGTTGTTTTCTTCTGGAGCAACCGAGCGCCC  1000

seq1  TG-TTTCTTCC-TGCCTGTGCCCCTGAGA--TCTCT-GAGGGTG-TCCTG  1036
      || |||||||| ||| |||||||||||||   |||| ||||||| |||||
seq2  TGTTTTCTTCCTTGCTTGTGCCCCTGAGAATCCTCTGGAGGGTGTTCCTG  1050

seq1  ATGC-TCTTTGTTGTGT-GAAGTCTGTG-TGTTTT-GAGCCATTGGCACC  1082
      |||| |||||| ||||| |||||||||| |||||| ||||||||||||||
seq2  ATGCTTCTTTGGTGTGTGGAAGTCTGTGTTGTTTTGGAGCCATTGGCACC  1100

seq1  TCTTCCCTGGAGTGCTCA--TCTCATTGGCACAATCTCAGCCATTTTTTG  1130
      |||| | |||||||||||  |||||||||  ||||||||||||  |||||
seq2  TCTTACATGGAGTGCTCAATTCTCATTGG--CAATCTCAGCCA--TTTTG  1146

seq1  AG-CAAAGTATTCACTT-TGTTTA  1152
      || ||| |||||||||| ||||||
seq2  AGCCAAGGTATTCACTTGTGTTTA  1170