BAC Information

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BAC

Clone NameB6Ng01-248K18
Chromosome2 (Build37)
Map Location 128,973,254 - 129,099,108
singlet/doubletdoublet
Overlap geneLOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l
Upstream geneBcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5
Downstream geneIl1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248K18.bB6Ng01-248K18.g
ACCGA056688GA056689
length8291,043
definitionB6Ng01-248K18.b B6Ng01-248K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,098,284 - 129,099,108)(128,973,254 - 128,974,288)
sequence
gaattcatagatctacctgactttacctccaaaatgctaggattaaaggt
gtgaattaccgttgttggccaggtgtgtgtgtgtgtgtgtgtgtttgtgt
gtgtacatgtgtgtgctttattaatttgatacagagtaccaagtcaggaa
aaaaattctaaatctaacatccctacaataaaatagcagctgaccttgtg
gtgtgctgtgatggagtttgcatcttcttctgggcaatggagctttttgt
cttcctttccttggttatttttttttcctgctctttacatacagtaacta
aataaaagtgagaaagaagaggccaggaaagatacagaaaaagctttaaa
aacgcctgcatgatgggactgtgggggtctccctggagttgaacctgtgg
ctcaatctttgtgaactacagtgcccaaattttatcatgaaagcaaggac
taaacagacagcagggtgcatggtgtgttttctgtctgtctagctttata
tcttagaggcaggtatgatatgatttaatgatatgatataaattattagg
aaaaaagaatttggtttaaagaaactttgaacacatctttttcactgaaa
ttagatatgccagtgttaaattgacatgttcagttttcttcatttttttc
cttatgaatctttaaaactgaatcattttaagtgtttatcactgaatatg
ggattgaaaaagaaaacatttttattgcagaaagtttatttgatactaag
cagaagtcccttagctcaatctttccatgaatgctttttaatgcccgttt
gttattttgttgcctccagccagtacagg
gaattcttacagggctagcaactaggggatcctttaaaaggccaggtaca
caagataaatcacactacagaggacggatatccatacttagcattcagat
gtgtagacacacatgtacatatgtgaacaaacacagccatctggtttttg
acaaagacgctagatatacagactagagaaatgacatgcatcttcagcaa
atggcactggaaaaactggatggttccatgtagaaaaatggaaccaaatc
actatgcctcaccctgcacaaaaaccaactccaaatggaccaacaacttc
aacataaaacctgaaactctgaaactactagaagacagagtcaggggcag
cacgttaggactgaggtgaaggtaaagaatttctggctaggtctccttcc
agatcacccaggagataaggccagtaactggcaaacaggacctcatgaaa
tgaaaaagcagtaaaccttgtcaattaaaggaaaccttgtcaattaaagg
aactttgtcaattaaaggaagaggcagcttacagagacggaagcatgtgg
agcgcttttggggctgcttctaaggatttggcaggaatttgacattgggc
taggacaaggaagtaggctcaaggtaaatgcagccgaggaatgtgttgta
ttccttgtatcctggtcatcctgataagcccctagactcgttgaccctgg
gactttgtttatcgccttgcttgattactttgtttatcgccttgcttgat
ttgtttattgccttgtttgttccttgattacttggctgatgccttccgac
ttaccctcttctttgtatgtacctagaaggatataaaagcagactgaaaa
agaattaaaccggcttcaacctcagccctggctggagtcatgtatagtgt
cgtctaactgtcttttttcttgtcaatctcactcccttcccttgagaccc
tgtaaactgactgagctggccttggtgaggagcccaccagaagaatggga
gaaaaacattttgccagcttatacatctgacgaagaaatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129098284_129099108
seq2: B6Ng01-248K18.b_50_878 (reverse)

seq1  CCTGTACTGGCTGGAGGCAACAAAATAAACAAAC-GGCATT-AAAAGCAT  48
      |||||||||||||||||||||||||| ||||||| |||||| ||||||||
seq2  CCTGTACTGGCTGGAGGCAACAAAAT-AACAAACGGGCATTAAAAAGCAT  49

seq1  TCATGGAAAGACTGAGCTAA-GGACTTCTGCTTAGTATCAAATAAACTTT  97
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TCATGGAAAGATTGAGCTAAGGGACTTCTGCTTAGTATCAAATAAACTTT  99

seq1  CTGCAATAAAAATGTTTTCTTTTTCAATCCCATATTCAGTGATAAACACT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATAAAAATGTTTTCTTTTTCAATCCCATATTCAGTGATAAACACT  149

seq1  TAAAATGATTCAGTTTTAAAGATTCATAAGGAAAAAAATGAAG-AAACTG  196
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAAATGATTCAGTTTTAAAGATTCATAAGGAAAAAAATGAAGAAAACTG  199

seq1  AACATGTCAATTTAACACTGGCATATCTAATTTCAGTG-AAAAGATGTGT  245
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACATGTCAATTTAACACTGGCATATCTAATTTCAGTGAAAAAGATGTGT  249

seq1  TCAAAGTTTCTTTAAACCAAATTCTTTTTTCCTAATAATTTATATCATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTCTTTAAACCAAATTCTTTTTTCCTAATAATTTATATCATAT  299

seq1  CATTAAATCATATCATACCTGCCTCTAAGATATAAAGCTAGACAGACAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATCATATCATACCTGCCTCTAAGATATAAAGCTAGACAGACAGA  349

seq1  AAACACACCATGCACCCTGCTGTCTGTTTAGTCCTTGCTTTCATGATAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACCATGCACCCTGCTGTCTGTTTAGTCCTTGCTTTCATGATAAA  399

seq1  ATTTGGGCACTGTAGTTCACAAAGATTGAGCCACAGGTTCAACTCCAGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCACTGTAGTTCACAAAGATTGAGCCACAGGTTCAACTCCAGGG  449

seq1  AGACCCCCACAGTCCCATCATGCAGGCGTTTTTAAAGCTTTTTCTGTATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCCACAGTCCCATCATGCAGGCGTTTTTAAAGCTTTTTCTGTATC  499

seq1  TTTCCTGGCCTCTTCTTTCTCACTTTTATTTAGTTACTGTATGTAAAGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCCTCTTCTTTCTCACTTTTATTTAGTTACTGTATGTAAAGAG  549

seq1  CAGGAAAAAAAAATAACCAAGGAAAGGAAGACAAAAAGCTCCATTGCCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAAAAAATAACCAAGGAAAGGAAGACAAAAAGCTCCATTGCCCA  599

seq1  GAAGAAGATGCAAACTCCATCACAGCACACCACAAGGTCAGCTGCTATTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGATGCAAACTCCATCACAGCACACCACAAGGTCAGCTGCTATTT  649

seq1  TATTGTAGGGATGTTAGATTTAGAATTTTTTTCCTGACTTGGTACTCTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGGGATGTTAGATTTAGAATTTTTTTCCTGACTTGGTACTCTGT  699

seq1  ATCAAATTAATAAAGCACACACATGTACACACACAAACACACACACACAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTAATAAAGCACACACATGTACACACACAAACACACACACACAC  749

seq1  ACACACACCTGGCCAACAACGGTAATTCACACCTTTAATCCTAGCATTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCTGGCCAACAACGGTAATTCACACCTTTAATCCTAGCATTTT  799

seq1  GGAGGTAAAGTCAGGTAGATCTATGAATTC  825
      ||||||||||||||||||||||||||||||
seq2  GGAGGTAAAGTCAGGTAGATCTATGAATTC  829

seq1: chr2_128973254_128974288
seq2: B6Ng01-248K18.g_68_1110

seq1  GAATTCTTACAGGGCTAGCAACTAGGGGATCCTTTAAAAGGCCAGGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGGGCTAGCAACTAGGGGATCCTTTAAAAGGCCAGGTACA  50

seq1  CAAGATAAATCACACTACAGAGGACGGATATCCATACTTAGCATTCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAATCACACTACAGAGGACGGATATCCATACTTAGCATTCAGAT  100

seq1  GTGTAGACACACATGTACATATGTGAACAAACACAGCCATCTGGTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACACACATGTACATATGTGAACAAACACAGCCATCTGGTTTTTG  150

seq1  ACAAAGACGCTAGATATACAGACTAGAGAAATGACATGCATCTTCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACGCTAGATATACAGACTAGAGAAATGACATGCATCTTCAGCAA  200

seq1  ATGGCACTGGAAAAACTGGATGGTTCCATGTAGAAAAATGGAACCAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTGGAAAAACTGGATGGTTCCATGTAGAAAAATGGAACCAAATC  250

seq1  ACTATGCCTCACCCTGCACAAAAACCAACTCCAAATGGACCAACAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCTCACCCTGCACAAAAACCAACTCCAAATGGACCAACAACTTC  300

seq1  AACATAAAACCTGAAACTCTGAAACTACTAGAAGACAGAGTCAGGGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAACCTGAAACTCTGAAACTACTAGAAGACAGAGTCAGGGGCAG  350

seq1  CACGTTAGGACTGAGGTGAAGGTAAAGAATTTCTGGCTAGGTCTCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTAGGACTGAGGTGAAGGTAAAGAATTTCTGGCTAGGTCTCCTTCC  400

seq1  AGATCACCCAGGAGATAAGGCCAGTAACTGGCAAACAGGACCTCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACCCAGGAGATAAGGCCAGTAACTGGCAAACAGGACCTCATGAAA  450

seq1  TGAAAAAGCAGTAAACCTTGTCAATTAAAGGAAACCTTGTCAATTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGCAGTAAACCTTGTCAATTAAAGGAAACCTTGTCAATTAAAGG  500

seq1  AACTTTGTCAATTAAAGGAAGAGGCAGCTTACAGAGACGGAAGCATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTCAATTAAAGGAAGAGGCAGCTTACAGAGACGGAAGCATGTGG  550

seq1  AGCGCTTTTGGGGCTGCTTCTAAGGATTTGGCAGGAATTTGACATTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTTTGGGGCTGCTTCTAAGGATTTGGCAGGAATTTGACATTGGGC  600

seq1  TAGGACAAGGAAGTAGGCTCAAGGTAAATGCAGCCGAGGAATGTGTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAAGGAAGTAGGCTCAAGGTAAATGCAGCCGAGGAATGTGTTGTA  650

seq1  TTCCTTGTATCCTGGTCATCCTGATAAGCCCCTAGACTCGTTGACCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTATCCTGGTCATCCTGATAAGCCCCTAGACTCGTTGACCCTGG  700

seq1  GACTTTGTTTATCGCCTTGCTTGATTACTTTGTTTATCGCCTTGCTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTTATCGCCTTGCTTGATTACTTTGTTTATCGCCTTGCTTGAT  750

seq1  TTGTTTATTGCCTTGTTTGTTCCTTGATTACTTGGCTGATGCCTTCCGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTGCCTTGTTTGTTCCTTGATTACTTGGCTGATGCCTTCCGAC  800

seq1  TTACCCTCTTCTTTGTATGTACCTAGAAGGATATAAAAGCAGACTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCTTCTTTGTATGTACCTAGAAGGATATAAAAGCAGACTGAAAA  850

seq1  AGAAATAAACCGGCTTCAACCTCAGCCCTGGCTGGAGTCATGTTATAGTG  900
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAATTAAACCGGCTTCAACCTCAGCCCTGGCTGGAGTCATG-TATAGTG  899

seq1  TCGTCTAACTGTC-TTTTTCTTGTCAATCCTCACTCCCTT-CCTTGAGAC  948
      ||||||||||||| |||||||||||||| ||||||||||| |||||||||
seq2  TCGTCTAACTGTCTTTTTTCTTGTCAAT-CTCACTCCCTTCCCTTGAGAC  948

seq1  CCTGTTAACTGACTGAGCTGG-CTTGGTGAGGAGCCCA-CAGA--GATGG  994
      ||||| ||||||||||||||| |||||||||||||||| ||||   ||||
seq2  CCTGTAAACTGACTGAGCTGGCCTTGGTGAGGAGCCCACCAGAAGAATGG  998

seq1  GAG-AAAACA-TTTGCCAGC-TATACATCTGACAGAG-AATGGGG  1035
      ||| |||||| ||||||||| ||||||||||||  || |||||||
seq2  GAGAAAAACATTTTGCCAGCTTATACATCTGACGAAGAAATGGGG  1043