BAC Information

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BAC

Clone NameB6Ng01-248O17
Chromosome2 (Build37)
Map Location 72,035,181 - 72,190,154
singlet/doubletdoublet
Overlap geneRapgef4, B230120H23Rik
Upstream geneDync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, LOC100040270
Downstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248O17.bB6Ng01-248O17.g
ACCGA056871GA056872
length1,1741,063
definitionB6Ng01-248O17.b B6Ng01-248O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,188,983 - 72,190,154)(72,035,181 - 72,036,243)
sequence
gaattcttataaggtctgcgtgagtcaagttcccaggggcctgaatggat
ccagcgcagaagcacgctgcttgcctgactggattcatggttggagcatt
ttccccaaatcaacctttgtaaaaagtgattcatacatgacggtaaaatg
ggaatctagccccttggcattggaaagtctacgttacaagaatgactaac
aaagcaggaagggggatttgatcacccgagtgtcaggcacgggtcacatt
tttgagtcactttgggctcacaaactgacaagcagtgagctctatggttc
tatagattctctttccagtgaggctccccaggtactcagggaaataagga
tggctaaatgaaccacattccggcaccataataggaatcctatattccta
aagagatttggcatcatagagactcctctctcttttttctctctttagaa
aactagttacagatgcgaaggaaagctagacaactcgttctcctcatgtt
tctggaaagctgacatgacgtcacacaaagctttcatcagccgtgtcagc
agaattgggaagtctgtggttgctcaatggttttcctgggtgggtgctac
agctgactcattatcaggggatgggcctgggccctctattttagtccatg
cttaactcaggctgaggagagtctaacctggctgaacaggggaatggcaa
gaacctaatgaaacaaacagtgtgaaggcctgagactaaagaaatgtctc
aaaccacaagattgctaagagatttacattcattgtgcctgtaactgggt
gtcataggttaacatgaaaaaaaaagtattaaacaacccgtattcaaatt
tgggatgaccaaaacacatgtaaaatctggcttttgatcacaagttactt
aacttggtcaaagagttgggccattattggtgctaaattattgaaaagaa
aaagtttattccaaacaaagcctttgggttcttgctttcttcctagaaag
gtggacctgggttgacaaaattcccagttccttagtttgcaatgtctgtt
catttctgattgatatgaatggattactaatataatttttcccatggagg
aacttaccatacctgctcagtgacctgtaacacggggtgtagacttcccc
tgtattgggagtctgacctctgac
gaattcacattgtccttcagttctgtgatcatagctggaagcaagaagtt
tagacattaatagatgcacgcagcattgctgatgctggtgtttccctcta
gtggacaaaatctttgctgagcagttggggttaaggtcagaagatgagtc
agcatgtcaggggttatgaggggttctgtacgaaactgagagggacggct
agagataaatggaagtaaaccagggacacatggaacactttgttagtccc
cagcaatgaaacaaacttccaggagacctgttttggaaacttttgctctt
tgttagatacattgtggtagttaaaaataaacaagagatatgagttagag
atggaaactgagctttaaacattgtatctcaaaatgtctccccccccaca
cacacactcattaggaacactattgctaataccgatatctctgtcagcaa
gaaacccaattttttttttgccttttcaggatcatttttgtataattttt
attttttgtgtctttagttctcctttatttaattcgttttcattattctg
ttaattctttttattcgaatcactagttgttttcactgaactatgaaata
tttaaatggatgaaaacagagattattaaaatagcttatttttatcaaaa
cgctcttgtttgcactacagtttaaacactttccaaacaatgagactgtc
ctccagctgtctcgagttcctccccttagcctgctcttccctcctcctca
acggtgattcctactctgaatatgttggttctgatcctaaccaattaaga
acgtatgcataggtatatatttatcaacaagctaccgcactgatttacat
gttttcaaacttcatattgcttggtcagatcattttttaaaacctatttt
gcattgcacatgcttttgtgatatgggggaacgcacttttcattagacgt
gccctgctggtaatttgaatacccagtaggaccctgtctctcaggccaaa
gcaaatactacagtctctcgttcttttatggtcacagagggacattattg
ttcctacctgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72188983_72190154
seq2: B6Ng01-248O17.b_49_1222 (reverse)

seq1  GTCAGA-GCCAGACTCCCACTACAGAGGGGGAGGTCCTAACACACCGTG-  48
      |||||| | |||||||||| ||||   ||||| |||   |||| ||||| 
seq2  GTCAGAGGTCAGACTCCCAATACA---GGGGAAGTC--TACACCCCGTGT  45

seq1  TCCAGTTCACTGAGCAGTTATTGGTAGTTTCCTCCATGAG-AAAATTATA  97
      | ||| ||||||||||| || |||||  |||||||||| | |||||||||
seq2  TACAGGTCACTGAGCAGGTA-TGGTAAGTTCCTCCATGGGAAAAATTATA  94

seq1  TTAGTAATCCATTCATTATC-ATCAGAAATTAACAGACATTGCAACTAAA  146
      ||||||||||||||| |||| ||||||||| ||||||||||||||   ||
seq2  TTAGTAATCCATTCA-TATCAATCAGAAATGAACAGACATTGCAAACTAA  143

seq1  GGAACTGGGAAATGTGTCCACCCAAGTC--ACTTTCTAGGAAGAAAGCAA  194
      ||||||||||| | |||| ||||| |||   |||||||||||||||||||
seq2  GGAACTGGGAATTTTGTCAACCCAGGTCCACCTTTCTAGGAAGAAAGCAA  193

seq1  GA--CCCAAGGCTTTGTTTGGGAATAAACTTTTTCTTTTCAATAATTTAG  242
      ||  || |||||||||||| ||||||||||||||||||||||||||||||
seq2  GAACCCAAAGGCTTTGTTT-GGAATAAACTTTTTCTTTTCAATAATTTAG  242

seq1  CA-CAAT-ATGG-CCAACTCTTTGACCAAGTTAAGTAACTTGTGATCAAA  289
      || |||| |||| |||||||||||||||||||||||||||||||||||||
seq2  CACCAATAATGGCCCAACTCTTTGACCAAGTTAAGTAACTTGTGATCAAA  292

seq1  AGCCAGATTTTTACATGTGTTTTGGTCAT-CCAAATTTGAATACGGGTTG  338
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCCAGA-TTTTACATGTGTTTTGGTCATCCCAAATTTGAATACGGGTTG  341

seq1  TTTTAATACTTTTTTTTTCATGTTAACCTATGACACCCAGTTACAGGCAC  388
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTAATACTTTTTTTTTCATGTTAACCTATGACACCCAGTTACAGGCAC  390

seq1  AATGAATGTAAATCTCTTAGCAATCTTGTGGTTTGAGACATTTCTTTAGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTAAATCTCTTAGCAATCTTGTGGTTTGAGACATTTCTTTAGT  440

seq1  CTCAGGCCTTCACACTGTTTGTTTCATTAGGTTCTTGCCATTCCCCTGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCTTCACACTGTTTGTTTCATTAGGTTCTTGCCATTCCCCTGTT  490

seq1  CAGCCAGGTTAGACTCTCCTCAGCCTGAGTTAAGCATGGACTAAAATAGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGTTAGACTCTCCTCAGCCTGAGTTAAGCATGGACTAAAATAGA  540

seq1  GGGCCCAGGCCCATCCCCTGATAATGAGTCAGCTGTAGCACCCACCCAGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGGCCCATCCCCTGATAATGAGTCAGCTGTAGCACCCACCCAGG  590

seq1  AAAACCATTGAGCAACCACAGACTTCCCAATTCTGCTGACACGGCTGATG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTGAGCAACCACAGACTTCCCAATTCTGCTGACACGGCTGATG  640

seq1  AAAGCTTTGTGTGACGTCATGTCAGCTTTCCAGAAACATGAGGAGAACGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGTGTGACGTCATGTCAGCTTTCCAGAAACATGAGGAGAACGA  690

seq1  GTTGTCTAGCTTTCCTTCGCATCTGTAACTAGTTTTCTAAAGAGAGAAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGCTTTCCTTCGCATCTGTAACTAGTTTTCTAAAGAGAGAAAA  740

seq1  AAGAGAGAGGAGTCTCTATGATGCCAAATCTCTTTAGGAATATAGGATTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGGAGTCTCTATGATGCCAAATCTCTTTAGGAATATAGGATTC  790

seq1  CTATTATGGTGCCGGAATGTGGTTCATTTAGCCATCCTTATTTCCCTGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGGTGCCGGAATGTGGTTCATTTAGCCATCCTTATTTCCCTGAG  840

seq1  TACCTGGGGAGCCTCACTGGAAAGAGAATCTATAGAACCATAGAGCTCAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGGAGCCTCACTGGAAAGAGAATCTATAGAACCATAGAGCTCAC  890

seq1  TGCTTGTCAGTTTGTGAGCCCAAAGTGACTCAAAAATGTGACCCGTGCCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCAGTTTGTGAGCCCAAAGTGACTCAAAAATGTGACCCGTGCCT  940

seq1  GACACTCGGGTGATCAAATCCCCCTTCCTGCTTTGTTAGTCATTCTTGTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCGGGTGATCAAATCCCCCTTCCTGCTTTGTTAGTCATTCTTGTA  990

seq1  ACGTAGACTTTCCAATGCCAAGGGGCTAGATTCCCATTTTACCGTCATGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGACTTTCCAATGCCAAGGGGCTAGATTCCCATTTTACCGTCATGT  1040

seq1  ATGAATCACTTTTTACAAAGGTTGATTTGGGGAAAATGCTCCAACCATGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCACTTTTTACAAAGGTTGATTTGGGGAAAATGCTCCAACCATGA  1090

seq1  ATCCAGTCAGGCAAGCAGCGTGCTTCTGCGCTGGATCCATTCAGGCCCCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCAGGCAAGCAGCGTGCTTCTGCGCTGGATCCATTCAGGCCCCT  1140

seq1  GGGAACTTGACTCACGCAGACCTTATAAGAATTC  1172
      ||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGACTCACGCAGACCTTATAAGAATTC  1174

seq1: chr2_72035181_72036243
seq2: B6Ng01-248O17.g_66_1128

seq1  GAATTCACATTGTCCTTCAGTTCTGTGATCATAGCTGGAAGCAAGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGTCCTTCAGTTCTGTGATCATAGCTGGAAGCAAGAAGTT  50

seq1  TAGACATTAATAGATGCACGCAGCATTGCTGATGCTGGTGTTTCCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTAATAGATGCACGCAGCATTGCTGATGCTGGTGTTTCCCTCTA  100

seq1  GTGGACAAAATCTTTGCTGAGCAGTTGGGGTTAAGGTCAGAAGATGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAAATCTTTGCTGAGCAGTTGGGGTTAAGGTCAGAAGATGAGTC  150

seq1  AGCATGTCAGGGGTTATGAGGGGTTCTGTACGAAACTGAGAGGGACGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCAGGGGTTATGAGGGGTTCTGTACGAAACTGAGAGGGACGGCT  200

seq1  AGAGATAAATGGAAGTAAACCAGGGACACATGGAACACTTTGTTAGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAATGGAAGTAAACCAGGGACACATGGAACACTTTGTTAGTCCC  250

seq1  CAGCAATGAAACAAACTTCCAGGAGACCTGTTTTGGAAACTTTTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGAAACAAACTTCCAGGAGACCTGTTTTGGAAACTTTTGCTCTT  300

seq1  TGTTAGATACATTGTGGTAGTTAAAAATAAACAAGAGATATGAGTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATACATTGTGGTAGTTAAAAATAAACAAGAGATATGAGTTAGAG  350

seq1  ATGGAAACTGAGCTTTAAACATTGTATCTCAAAATGTCTCCCCCCCCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTGAGCTTTAAACATTGTATCTCAAAATGTCTCCCCCCCCACA  400

seq1  CACACACTCATTAGGAACACTATTGCTAATACCGATATCTCTGTCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCATTAGGAACACTATTGCTAATACCGATATCTCTGTCAGCAA  450

seq1  GAAACCCAATTTTTTTTTTGCCTTTTCAGGATCATTTTTGTATAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAATTTTTTTTTTGCCTTTTCAGGATCATTTTTGTATAATTTTT  500

seq1  ATTTTTTGTTTCTTTAGTTCTCCTTTATTTAATTCGTTTTCATTATTCTG  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTGTCTTTAGTTCTCCTTTATTTAATTCGTTTTCATTATTCTG  550

seq1  TTAATTCTTTTTATTCGAATCACTAGTTGTTTTCACTGAACTATGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTTTTATTCGAATCACTAGTTGTTTTCACTGAACTATGAAATA  600

seq1  TTTAAATGGATGAAAACAGAGATTATTAAAATAGCTTATTTTTATCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGATGAAAACAGAGATTATTAAAATAGCTTATTTTTATCAAAA  650

seq1  CGCTCTTGTTTGCACTACAGTTTAAACACTTTCCAAACAATGAGACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTGTTTGCACTACAGTTTAAACACTTTCCAAACAATGAGACTGTC  700

seq1  CTCCAGCTGTCTCGAGTTCCTCCCCTTAGCCTGCTCTTCCCTCCTCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGTCTCGAGTTCCTCCCCTTAGCCTGCTCTTCCCTCCTCCTCA  750

seq1  ACGGTGATTCCTACTCTGAATATGTTGGTTCTGATCCTAACCAATTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGATTCCTACTCTGAATATGTTGGTTCTGATCCTAACCAATTAAGA  800

seq1  ACGTATGCATAGGTATATATTTATCAACAAGCTACCGCACTGATTTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATGCATAGGTATATATTTATCAACAAGCTACCGCACTGATTTACAT  850

seq1  GTTTTCAAACTTCATATTGC-TGGTCAGATCA-TTTTTAAAACCTATTTT  898
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GTTTTCAAACTTCATATTGCTTGGTCAGATCATTTTTTAAAACCTATTTT  900

seq1  GCATTGCACAATGC-TTTGTGAATTATGGGGGAACGCACTTTCCATTAAG  947
      ||||||||| |||| |||||||  |||||||||||||||||| |||| ||
seq2  GCATTGCAC-ATGCTTTTGTGA--TATGGGGGAACGCACTTTTCATT-AG  946

seq1  ACGTGCCTTGCTGGTAAATTG-ATACCCAGTAAGAACCTGTCTCTCAGGG  996
      ||||||| ||||||||| ||| |||||||||| || ||||||||||||| 
seq2  ACGTGCCCTGCTGGTAATTTGAATACCCAGTAGGACCCTGTCTCTCAGGC  996

seq1  CAAAGCAAATACTACAGTCTCTCGTCCTTTTATGTTCCACAGAGAGACAA  1046
      ||||||||||||||||||||||||| |||||||| | ||||||| |||| 
seq2  CAAAGCAAATACTACAGTCTCTCGTTCTTTTATGGT-CACAGAGGGACAT  1045

seq1  TAATGTT-CTACCTGAAT  1063
      || |||| ||||||||||
seq2  TATTGTTCCTACCTGAAT  1063