BAC Information

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BAC

Clone NameB6Ng01-249A16
Chromosome2 (Build37)
Map Location 111,410,478 - 111,525,625
singlet/doubletdoublet
Overlap geneLOC668822, Olfr1297, Olfr1298, Olfr1299
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295
Downstream geneOlfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249A16.bB6Ng01-249A16.g
ACCGA056965GA056966
length4461,143
definitionB6Ng01-249A16.b B6Ng01-249A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,410,478 - 111,410,928)(111,524,468 - 111,525,625)
sequence
cacagcaaacacctttattctcagagacatttttcctccatcttcgttaa
gtaagttttataaagaagacattgatgcacctctcaaacatgcttatttt
aattttagatttaaaccatctaagaaatgcaggtaaaaattgtcgtgtat
agaaaattagggaaatggtagaactctaattcaaagattggcttcattct
gcctgtgtactgggtgcagggctgaatataaaaagtaattgactaatgtt
tgactgtgggtgtctgtatcttatctaatcagttgctgaaggaagtcttt
ctgacgatgatttggcttataactgctctatgagtgtagcagaatatcat
aaggaagtatatcattcattcactttgttgttgttaatcatatctagatc
tgctggtagtctctgagccatcctgcttgtttttgtttttgtttta
gaattcttctctctcaagtttccagccattttttttcacacaaacaaaat
atcctagaatttctattgtctccatttgtgtttctagaaacttctaattt
cctgtagattattcactccattgacaggtaatagtatttaaaaatctggt
gattattattagtgtaacaataaaaactactactactatcacattattat
tattattatgattattattttgtcataatgtctcctcttccatttgaatt
gcatatacttgagttcctttaccttttgtaactagagatgattgcttgta
tcttttaaaagtcaactccaacttttcattccaatccacatatgcatatt
gcaaaatcagacatttatatgactgataggaaagggaaattgtaggatca
ttgtggagaacaatatttagggttcataacaattaaacatggagataata
tgtaagccagcatgctgctttctactatatatctgcagcttttgaaattt
atgtgttgaagatatatctgcacagtcctatttttatagtattacttatc
acagtcacactcagtttaattttctatggataagtggataaagctggagg
tggttgatagcactgagtgaactgttctccaaatgcagcagggcagatgc
agataggtactcacagatgtgtacaatgttcacattgtatccatatatgt
ttgattgttaattgctgatatagcagtgagctaaatgctaacagattctg
gtattgccattacagtgacccattaccagcctcctgttttgtaaatctga
aagaaaggtcatactgtcctctacccgtagactgttaaaagatttgtatc
agctgtgccttactgctgattgagttttataaggagcaaacgaccagtag
ctagagcaagaaggagaaggtgagacttctggggcggggagagaaaaata
gagtctgggaagaagaaagaggagagtcatcagagaggatttttgaaagg
agatatgggagagaagatactatttccttgccgaagcatagtagccatgt
gatgagtattcgatgattctagttgaaagtctgccaggttaagctagctt
taatttccaaaggtctttgatttggcagaagcaatgtcagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111410478_111410928
seq2: B6Ng01-249A16.b_48_498

seq1  GAATTCCACAGCAAACACCTTTATTCTCAGAGACATTTTTCCTCCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCAAACACCTTTATTCTCAGAGACATTTTTCCTCCATCTT  50

seq1  CGTTAAGTAAGTTTTATAAAGAAGACATTGATGCACCTCTCAAACATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAGTAAGTTTTATAAAGAAGACATTGATGCACCTCTCAAACATGCT  100

seq1  TATTTTAATTTTAGATTTAAACCATCTAAGAAATGCAGGTAAAAATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATTTTAGATTTAAACCATCTAAGAAATGCAGGTAAAAATTGTC  150

seq1  GTGTATAGAAAATTAGGGAAATGGTAGAACTCTAATTCAAAGATTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAGAAAATTAGGGAAATGGTAGAACTCTAATTCAAAGATTGGCTT  200

seq1  CATTCTGCCTGTGTACTGGGTGCAGGGCTGAATATAAAAAGTAATTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCCTGTGTACTGGGTGCAGGGCTGAATATAAAAAGTAATTGACT  250

seq1  AATGTTTGACTGTGGGTGTCTGTATCTTATCTAATCAGTTGCTGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGACTGTGGGTGTCTGTATCTTATCTAATCAGTTGCTGAAGGAA  300

seq1  GTCTTTCTGACGATGATTTGGCTTATAACTGCTCTATGAGTGTAGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGACGATGATTTGGCTTATAACTGCTCTATGAGTGTAGCAGAA  350

seq1  TATCATAAGGAAGTATATCATTCATTCACTTTGTTGTTGTTAATCATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAAGGAAGTATATCATTCATTCACTTTGTTGTTGTTAATCATATC  400

seq1  TAGATCTGCTGGTAGTCTCTGAGCCATCCTGCTTGTTTTTGTTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTGCTGGTAGTCTCTGAGCCATCCTGCTTGTTTTTGTTTTTGTTT  450

seq1  T  451
      |
seq2  T  451

seq1: chr2_111524468_111525625
seq2: B6Ng01-249A16.g_67_1209 (reverse)

seq1  AAGCTGTAACTATTGCTTTCTGCCAAATCAAAGACCTTTGAAATTTTTAA  50
      ||||||  || ||||| ||||||||||||||||||||||| ||   ||||
seq2  AAGCTG--AC-ATTGC-TTCTGCCAAATCAAAGACCTTTGGAA--ATTAA  44

seq1  AGCTTAGGCTTTAACTGGGCAGACTCTCAACTAG-ATCATCTGATACTCA  99
      ||| |||   |||||  |||||||| |||||||| ||||||  |||||||
seq2  AGC-TAG--CTTAACCTGGCAGACTTTCAACTAGAATCATCGAATACTCA  91

seq1  TCACATTGCTAACTATGCCTTCCGGGCCAGGAATATGTATCTTCTCTCCC  149
      |||||| ||| |||||| ||||  ||| |||||   ||||||||||||||
seq2  TCACATGGCT-ACTATG-CTTC--GGCAAGGAAATAGTATCTTCTCTCCC  137

seq1  ATATCTCCTTTCAAAAATTCTCTCCTGATGACTCTCCTCTTTCTTCTTCC  199
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  ATATCTCCTTTCAAAAATCCTCT-CTGATGACTCTCCTCTTTCTTCTTCC  186

seq1  CAGACTCTATTTTTCTCTCCCCGCCCCCAGAAGTCTCACCTTCTCCTTCT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGACTCTATTTTTCTCTCCCCG-CCCCAGAAGTCTCACCTTCTCCTTCT  235

seq1  TGCTCTAGCTACTGGTCGTTTGCTCCTTATAAAACTCAATCAGCAGTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGCTACTGGTCGTTTGCTCCTTATAAAACTCAATCAGCAGTAAG  285

seq1  GCACAGCTGATACAAATCTTTTAACAGTCTACGGGTAGAGGACAGTATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTGATACAAATCTTTTAACAGTCTACGGGTAGAGGACAGTATGA  335

seq1  CCTTTTCTTTCAGATTTACAAAACAGGAGGCTGGTAATGGGTCACTGTAA  399
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CC-TTTCTTTCAGATTTACAAAACAGGAGGCTGGTAATGGGTCACTGTAA  384

seq1  TGGCAATACCAGAATCTGTTAGCATTTAGCTCACTGCTATATCAGCAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATACCAGAATCTGTTAGCATTTAGCTCACTGCTATATCAGCAATT  434

seq1  AACAATCAAACATATATGGATACAATGTGAACATTGTACACATCTGTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAAACATATATGGATACAATGTGAACATTGTACACATCTGTGAG  484

seq1  TACCTATCTGCATCTGCCCTGCTGCATTTGGAGAACAGTTCACTCAGTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCTGCATCTGCCCTGCTGCATTTGGAGAACAGTTCACTCAGTGC  534

seq1  TATCAACCACCTCCAGCTTTATCCACTTATCCATAGAAAATTAAACTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCACCTCCAGCTTTATCCACTTATCCATAGAAAATTAAACTGAG  584

seq1  TGTGACTGTGATAAGTAATACTATAAAAATAGGACTGTGCAGATATATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGTGATAAGTAATACTATAAAAATAGGACTGTGCAGATATATCT  634

seq1  TCAACACATAAATTTCAAAAGCTGCAGATATATAGTAGAAAGCAGCATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACATAAATTTCAAAAGCTGCAGATATATAGTAGAAAGCAGCATGC  684

seq1  TGGCTTACATATTATCTCCATGTTTAATTGTTATGAACCCTAAATATTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACATATTATCTCCATGTTTAATTGTTATGAACCCTAAATATTGT  734

seq1  TCTCCACAATGATCCTACAATTTCCCTTTCCTATCAGTCATATAAATGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAATGATCCTACAATTTCCCTTTCCTATCAGTCATATAAATGTC  784

seq1  TGATTTTGCAATATGCATATGTGGATTGGAATGAAAAGTTGGAGTTGACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGCAATATGCATATGTGGATTGGAATGAAAAGTTGGAGTTGACT  834

seq1  TTTAAAAGATACAAGCAATCATCTCTAGTTACAAAAGGTAAAGGAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATACAAGCAATCATCTCTAGTTACAAAAGGTAAAGGAACTCA  884

seq1  AGTATATGCAATTCAAATGGAAGAGGAGACATTATGACAAAATAATAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGCAATTCAAATGGAAGAGGAGACATTATGACAAAATAATAATC  934

seq1  ATAATAATAATAATAATGTGATAGTAGTAGTAGTTTTTATTGTTACACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATGTGATAGTAGTAGTAGTTTTTATTGTTACACTA  984

seq1  ATAATAATCACCAGATTTTTAAATACTATTACCTGTCAATGGAGTGAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCACCAGATTTTTAAATACTATTACCTGTCAATGGAGTGAATA  1034

seq1  ATCTACAGGAAATTAGAAGTTTCTAGAAACACAAATGGAGACAATAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGGAAATTAGAAGTTTCTAGAAACACAAATGGAGACAATAGAAA  1084

seq1  TTCTAGGATATTTTGTTTGTGTGAAAAAAAATGGCTGGAAACTTGAGAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGATATTTTGTTTGTGTGAAAAAAAATGGCTGGAAACTTGAGAGA  1134

seq1  GAAGAATTC  1158
      |||||||||
seq2  GAAGAATTC  1143