BAC Information

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BAC

Clone NameB6Ng01-249N14
Chromosome2 (Build37)
Map Location 145,624,587 - 145,784,299
singlet/doubletdoublet
Overlap geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Upstream gene1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249N14.bB6Ng01-249N14.g
ACCGA057561GA057562
length1,1601,038
definitionB6Ng01-249N14.b B6Ng01-249N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,783,136 - 145,784,299)(145,624,587 - 145,625,619)
sequence
gaattcatgtgctggtcagcgctatcaactataaaatactttacttttag
gagaacagaaggtctagcccagacagacttgttctctttttgggcactca
agtgtccatcagaccctgaaaaacatgccagatccccacccccccccaaa
aaaaatggagctgaattcaagccttacaaccaataggctggcaaagatac
tcacttggcaatttgtgtatctttcaaacttagggcgtggcaaaactaag
aatgccctgtgtggtggctctaaccagccttccggaagacgaacatattc
atccttcactatgtcacctcgccaggaggtacatggtggcaccctagagc
ccaagaactcttcttagcaacccggtcaagcctcttggtgacagtttcgc
agactgcttcatggctgcaacatcttgtcctttctctataaccagcattc
tagagggaaggcacaggctggcttcccttgaggcagagagatgtgtgtaa
cacaggctgctagccaggtcactgtgcaaatcctcaggtgggaaatatta
ccccagctcggcgagaacagcacaaaggcagcctgcatgtccaagaaacg
tcccagacccttctgctggcctcaaagcttcttctttatctaaagaggct
gcactctccagttagacttaaaaatatactattaaaagaagttgctactt
taaatgtcacaaatacattttactgtagtgtatttgaaaaaaaaaaggaa
gaatccaatttagttctaaagaatacagcttgctttgtcacatcatgctt
tcatcaaagaacagtgtctcaacataggacagggcaacataaaagttgtt
gccaactatatgtttctttttcatcctcttgcagcggaggcgggagaagt
acccttttcctttccaagatctcttgtgccctctagtggtctttcttatg
gaaattaacttccatcctttacatggtcctttctagaacttaaaactggt
gttagagtcagttaactcggatcattggaaaatgtgatctttttaagtgg
aggtggattttaaaattcagacgttctgagtgatagaaagggctccaaag
caatgcaggcagcatgtagtcccatcatccagacggctggttcaatgtgc
aatcttgaca

gaattcacagctttgtggttgttagacaagcaccctagaactgagctaca
tcctgagacctcaagcagagtctgttttttgtttgtttgttgtgttgttg
ttgttgttgagatattttgatttgatttgatttgtctctgagataaagtc
tgcctcaaaagcccaaactagttttgaaatcactgggcagcccaggatgg
cctcccaacatctgtcaacttcctaggaatgacaatggagtgccactttg
cccagctcaagatgtactatgtagccttcctgtgtttgtgacacggagtt
cctgagatgtccctaaagtcaggacagtgtaatcctgtctccacccatca
cttttgcagtactgtgacatcaaggctgtgtgagcgtcaacagagaaaca
ctgtgtcctcgtctatgtggaggatcttctcaaaagatttgaataacagg
gagaggtgactaacactaaccctggggtaaatgtgtgctctgaggaaagg
cttatccccagcaggcagcctcatggcggcccaacagcggcaggcagccc
agagacatctttattcacttgttttccagttcagccttctagttggaatt
ttcaagacagactagagtggtggtaatcccaggagttggaaaactgcctt
ccactctgaaattgtgactgtgtgctgcagatctactgttctcgttggga
aaagctgactcaggggacaaacgatggtaattgcttataggggtctatct
acccttggggtctctgtgaccatctactgagggcgagaaagccagtgcac
cccgcaccagagcagtgtggctttggcttaccagtctcctcatcttggat
gtcccctgccatgtttcccaagcccacattcaccatgcccttttctgttt
ctacccctaaggtcaggtcaagttgcttagtgacctcaaactcggaagga
gtgttgggttccactgtactattatacagaactaaactttaacttttttt
ttttttactcttttactttggtgtgcatggaatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145783136_145784299
seq2: B6Ng01-249N14.b_45_1204 (reverse)

seq1  TGTCAAGATTGGCACATGGACCCCAGCGGTCTGGATGATGGGAACTTACA  50
      |||||||||| |||||| ||  ||||| |||||||||||||||   ||||
seq2  TGTCAAGATT-GCACATTGA-ACCAGCCGTCTGGATGATGGGA--CTACA  46

seq1  TGGCCTG-CTGCA-TGCTTTGAAGCCCTTCTAATCACTCAGAACGTCTGG  98
      ||  ||| ||||| ||||||| |||||||   |||||||||||||||| |
seq2  TG--CTGCCTGCATTGCTTTGGAGCCCTTTCTATCACTCAGAACGTCT-G  93

seq1  AATTTTAAAATCCACCT-CACTTAAAAAGATCACATTTTCCAATGATCCG  147
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATTTTAAAATCCACCTCCACTTAAAAAGATCACATTTTCCAATGATCCG  143

seq1  AAGTTAACTGACTCTAAACACCAGTTTTAAAGTTCTAGAAAGGACCATGT  197
       |||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  -AGTTAACTGACTCT-AACACCAGTTTT-AAGTTCTAGAAAGGACCATGT  190

seq1  AAAGGATGGAAGTTAATTTCCATAAG-AAGACCACTAGAGGGCACAAGAG  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGGATGGAAGTTAATTTCCATAAGAAAGACCACTAGAGGGCACAAGAG  240

seq1  ATCTTGGAAAGG-AAAGGGTACTTCTCCCGCCTCCGCTGCAAGAGGATGA  295
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAAAGGAAAAGGGTACTTCTCCCGCCTCCGCTGCAAGAGGATGA  290

seq1  AAAAGAAACATATAGTTGGCAACAACTTTTATGTTGCCCTGTCCTATGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACATATAGTTGGCAACAACTTTTATGTTGCCCTGTCCTATGTT  340

seq1  GAGACACTGTTC-TTGATGAAAGCATGATGTGACAAAGCAAGCTGTATTC  394
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGACACTGTTCTTTGATGAAAGCATGATGTGACAAAGCAAGCTGTATTC  390

seq1  TTTAGAACTAAATTGGATTCTTCCTTTTTTTTTTCAAATACACTACAGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACTAAATTGGATTCTTCCTTTTTTTTTTCAAATACACTACAGTA  440

seq1  AAATGTATTTGTGACATTTAAAGTAGCAACTTCTTTTAATAGTATATTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTGTGACATTTAAAGTAGCAACTTCTTTTAATAGTATATTTT  490

seq1  TAAGTCTAACTGGAGAGTGCAGCCTCTTTAGATAAAGAAGAAGCTTTGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTAACTGGAGAGTGCAGCCTCTTTAGATAAAGAAGAAGCTTTGAG  540

seq1  GCCAGCAGAAGGGTCTGGGACGTTTCTTGGACATGCAGGCTGCCTTTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGAAGGGTCTGGGACGTTTCTTGGACATGCAGGCTGCCTTTGTG  590

seq1  CTGTTCTCGCCGAGCTGGGGTAATATTTCCCACCTGAGGATTTGCACAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCGCCGAGCTGGGGTAATATTTCCCACCTGAGGATTTGCACAGT  640

seq1  GACCTGGCTAGCAGCCTGTGTTACACACATCTCTCTGCCTCAAGGGAAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCTAGCAGCCTGTGTTACACACATCTCTCTGCCTCAAGGGAAGC  690

seq1  CAGCCTGTGCCTTCCCTCTAGAATGCTGGTTATAGAGAAAGGACAAGATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGCCTTCCCTCTAGAATGCTGGTTATAGAGAAAGGACAAGATG  740

seq1  TTGCAGCCATGAAGCAGTCTGCGAAACTGTCACCAAGAGGCTTGACCGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCATGAAGCAGTCTGCGAAACTGTCACCAAGAGGCTTGACCGGG  790

seq1  TTGCTAAGAAGAGTTCTTGGGCTCTAGGGTGCCACCATGTACCTCCTGGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGAAGAGTTCTTGGGCTCTAGGGTGCCACCATGTACCTCCTGGC  840

seq1  GAGGTGACATAGTGAAGGATGAATATGTTCGTCTTCCGGAAGGCTGGTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACATAGTGAAGGATGAATATGTTCGTCTTCCGGAAGGCTGGTTA  890

seq1  GAGCCACCACACAGGGCATTCTTAGTTTTGCCACGCCCTAAGTTTGAAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCACACAGGGCATTCTTAGTTTTGCCACGCCCTAAGTTTGAAAG  940

seq1  ATACACAAATTGCCAAGTGAGTATCTTTGCCAGCCTATTGGTTGTAAGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAATTGCCAAGTGAGTATCTTTGCCAGCCTATTGGTTGTAAGGC  990

seq1  TTGAATTCAGCTCCATTTTTTTTGGGGGGGGGTGGGGATCTGGCATGTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCAGCTCCATTTTTTTTGGGGGGGGGTGGGGATCTGGCATGTTT  1040

seq1  TTCAGGGTCTGATGGACACTTGAGTGCCCAAAAAGAGAACAAGTCTGTCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTCTGATGGACACTTGAGTGCCCAAAAAGAGAACAAGTCTGTCT  1090

seq1  GGGCTAGACCTTCTGTTCTCCTAAAAGTAAAGTATTTTATAGTTGATAGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGACCTTCTGTTCTCCTAAAAGTAAAGTATTTTATAGTTGATAGC  1140

seq1  GCTGACCAGCACATGAATTC  1164
      ||||||||||||||||||||
seq2  GCTGACCAGCACATGAATTC  1160


seq1: chr2_145624587_145625619
seq2: B6Ng01-249N14.g_66_1103

seq1  GAATTCACAGCTTTGTGGTTGTTAGACAAGCACCCTAGAACTGAGCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTTTGTGGTTGTTAGACAAGCACCCTAGAACTGAGCTACA  50

seq1  TCCTGAGACCTCAAGCAGAGTCTGTTTTTTGTTTGTTTGTTGTGTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGACCTCAAGCAGAGTCTGTTTTTTGTTTGTTTGTTGTGTTGTTG  100

seq1  TTGTTGTTGAGATATTTTGATTTGATTTGATTTGTCTCTGAGATAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGAGATATTTTGATTTGATTTGATTTGTCTCTGAGATAAAGTC  150

seq1  TGCCTCAAAAGCCCAAACTAGTTTTGAAATCACTGGGCAGCCCAGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAAGCCCAAACTAGTTTTGAAATCACTGGGCAGCCCAGGATGG  200

seq1  CCTCCCAACATCTGTCAACTTCCTAGGAATGACAATGGAGTGCCACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAACATCTGTCAACTTCCTAGGAATGACAATGGAGTGCCACTTTG  250

seq1  CCCAGCTCAAGATGTACTATGTAGCCTTCCTGTGTTTGTGACACGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCAAGATGTACTATGTAGCCTTCCTGTGTTTGTGACACGGAGTT  300

seq1  CCTGAGATGTCCCTAAAGTCAGGACAGTGTAATCCTGTCTCCACCCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGTCCCTAAAGTCAGGACAGTGTAATCCTGTCTCCACCCATCA  350

seq1  CTTTTGCAGTACTGTGACATCAAGGCTGTGTGAGCGTCAACAGAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAGTACTGTGACATCAAGGCTGTGTGAGCGTCAACAGAGAAACA  400

seq1  CTGTGTCCTCGTCTATGTGGAGGATCTTCTCAAAAGATTTGAATAACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTCGTCTATGTGGAGGATCTTCTCAAAAGATTTGAATAACAGG  450

seq1  GAGAGGTGACTAACACTAACCCTGGGGTAAATGTGTGCTCTGAGGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGACTAACACTAACCCTGGGGTAAATGTGTGCTCTGAGGAAAGG  500

seq1  CTTATCCCCAGCAGGCAGCCTCATGGCGGCCCAACAGCGGCAGGCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCCCAGCAGGCAGCCTCATGGCGGCCCAACAGCGGCAGGCAGCCC  550

seq1  AGAGACATCTTTATTCACTTGTTTTCCAGTTCAGCCTTCTAGTTGGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATCTTTATTCACTTGTTTTCCAGTTCAGCCTTCTAGTTGGAATT  600

seq1  TTCAAGACAGACTAGAGTGGTGGTAATCCCAGGAGTTGGAAAACTGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGACTAGAGTGGTGGTAATCCCAGGAGTTGGAAAACTGCCTT  650

seq1  CCACTCTGAAATTGTGACTGTGTGCTGCAGATCTACTGTTCTCGTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGAAATTGTGACTGTGTGCTGCAGATCTACTGTTCTCGTTGGGA  700

seq1  AAAGCTGACTCAGGGGACAAACGATGGTAATTGCTTATAGGGGTCTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGACTCAGGGGACAAACGATGGTAATTGCTTATAGGGGTCTATCT  750

seq1  ACCCTTGGGGTCTCTGTGACCATCTACTGAGGGCGAGAAAGCCAGTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGGGTCTCTGTGACCATCTACTGAGGGCGAGAAAGCCAGTGCAC  800

seq1  CCCGCACCAGAGCAGTGTGGCTTTGGCTTACCAGTCTCC-CATCTTGGAT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCGCACCAGAGCAGTGTGGCTTTGGCTTACCAGTCTCCTCATCTTGGAT  850

seq1  GTCCCCTGCCATGTTTCCCAAGCCCACATTCACCATGCCCTTTTCTG-TT  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCCCCTGCCATGTTTCCCAAGCCCACATTCACCATGCCCTTTTCTGTTT  900

seq1  CTACCCCTAAGGTCAGGTCAAG-TGCTTAGTGACCTCAAACTCGG-AGGA  946
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CTACCCCTAAGGTCAGGTCAAGTTGCTTAGTGACCTCAAACTCGGAAGGA  950

seq1  GTG-TGGGTTCCACTGTCACTATTTATACAGAACTAAACTTTAACTTTTT  995
      ||| ||||||||||||| |||| |||||||||||||||||||||||||||
seq2  GTGTTGGGTTCCACTGT-ACTA-TTATACAGAACTAAACTTTAACTTTTT  998

seq1  TTTTTTTTACTC-TTTACTTTTGTGTGCATGG-ATGTGTG  1033
      |||||||||||| |||||||| |||||||||| |||||||
seq2  TTTTTTTTACTCTTTTACTTTGGTGTGCATGGAATGTGTG  1038


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