BAC Information

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BAC

Clone NameB6Ng01-250B06
Chromosome2 (Build37)
Map Location 86,392,539 - 86,519,596
singlet/doubletdoublet
Overlap geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086
Upstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079
Downstream geneOlfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250B06.bB6Ng01-250B06.g
ACCGA057725GA057726
length1,1201,157
definitionB6Ng01-250B06.b B6Ng01-250B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,518,477 - 86,519,596)(86,392,539 - 86,393,687)
sequence
gaattctgtactgtataacaatgcatacaagtagatttacattaatttag
gagctgggcatatgttgttcaatatatacaaagacttctgactattttgg
ctataaaccttggggtgtatttgattactgtttcctcaaacaagcatctg
ttccttccacatctagtacaaaatcctgattgacaataaactgaactcca
cttcctcatttaccaaaagaataaatgagtatattgaaatgatcactaac
caaattcacactctttaaatagtaactcatggagaactcagcaggatggc
atatacaataaccaaaactattgggaatctgaagcatgattgctatgaag
tcaaggttatcctggcttacagtaagatggaatcttaactcaacccctgc
aaaaaactctaccccttcaaacaaacaaacaaaacaaaacaaaaacaaaa
caaccatataattcttagacatagatgattaacaaataatttttgttcta
aaatgttttatatattataacccaagtattagacaagcaatatatatcag
tatattctataatttgcttttaaagatttgatcttgccatatgtttttct
cataaggcattctgacatgttattaattggttttaattttctttgtccac
ttttatacatatcttaacaaattattctgtagaaattatgacagatttag
aattatatttctagtacaatgttccattcatatattgtaactcaagaggt
tctatgtcaaagatgattattgtacctaacttttttgttgtaattaatag
tgtaaatatttaatagaaatgatctatatcctatattgttgacatacaat
tcaagaaggaatatatctattttatctatattacatataatgtagttata
tttatataaaggtaaatacacataattttgttgtttttttttcaaacaca
taaatataaaaaaacacacagtattcaaatatgccaatatctttacactc
tctattacaaattatactatttttctttgtgttaacatatatcagagatt
gatagtacatacattacaacaaaaactcatttttgtgttattataaattt
aattcagtatttcctttttt

gaattcatgaactcactgcatttgtagatgtctgtattagactggactag
ttgggctcaccaacatttaaatcatgttttgagagagcctctacaatgcc
atcctttcctgaaggaaaacaatgaaatgttattttctttaatgctaaac
ttacacttagtttgccatattattttaaacatcttgctacctaacattgt
aacttttattaattcagtgggctacaaatcacagaagaaagtagaaggag
atatttgaaaataaatgtttcagatggagaaggatgatgagggagtcaag
aattgaagtgacaataattaagttttattttactaatgtatgaaactgtt
gaatatataaaccaaaattaaatcaaaagcagtataatttcataaaacag
aagtacatgctgatatatacaaatgttactgtgtttattttagtagaaaa
ttctgcttgaagattcaaaatccattttatacatactaaaatttctctct
ctcatgcacaagatgcatcaacagatataccttcagttctataagatata
ccctcagttctatagttacaaaatatgtttatattttgcaacaggcttag
cagttatgtgtagttaataatgttccaagaaggaaattattctcctctaa
tagaagtatgatatttggaaactggattagcaccagaattcaagtagata
atacaagtttcacacactggggcttgttctacattccagaggaaagtaaa
atggtgtatattcaagcctgctttgaaggatttgtatggcatttaaattt
taagaaaatgtgttgaatattttttgccatgttctttgtaaagcttcttt
tacatcttgttcctcagactgtagatcaggggattcaataaaggggatga
ttaaagtataaaaataatagatgatattttatcagtatcaattgaatggc
taggattcaggttgtacatacataaatatcagtgttccaatagaataact
gttaactactgtcaaggtggtgaccccacaggtaagagaaagccttgcgt
ctgccctcagcagaagtcatccctgagaacagcctatgagatgagcaggt
aggacattaggccacaacgacaaggtagaatccatcaaaagctgcaagat
ctaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_86518477_86519596
seq2: B6Ng01-250B06.b_45_1164 (reverse)

seq1  AAAAAAGAAAATACTGAAATTAAATTTATA--TACAC-AAAATGAGTTTT  47
      ||||||| |||||||| |||||||||||||   |||| ||||||||||||
seq2  AAAAAAGGAAATACTG-AATTAAATTTATAATAACACAAAAATGAGTTTT  49

seq1  TGTTGTATGGTATGTACTATCAATCTCCTGATATATGTTAACACAAAGAA  97
      |||||||  ||||||||||||||||| ||||||||||||||||||||| |
seq2  TGTTGTAATGTATGTACTATCAATCT-CTGATATATGTTAACACAAAG-A  97

seq1  AAAATAGTTATTAATTTGTTAATAGAGAGTGTAAAGATATTGGCATATTT  147
      ||||||||   ||||||| |||||||||||||||||||||||||||||||
seq2  AAAATAGT--ATAATTTG-TAATAGAGAGTGTAAAGATATTGGCATATTT  144

seq1  G-ATACTGTGTGTTTTTTTATATTTATGTGTTTG-AAAAAAAACAACAAA  195
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATACTGTGTGTTTTTTTATATTTATGTGTTTGAAAAAAAAACAACAAA  194

seq1  ATTATGTGTATTTACC-TTATATAAATATAACTACATTATATGTAATATA  244
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTATGTGTATTTACCTTTATATAAATATAACTACATTATATGTAATATA  244

seq1  GATAAAATAGATATATTCCTTCTTGAATTGTATGTCAACAATATAGGATA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATAGATATATTCCTTCTTGAATTGTATGTCAACAATATAGGATA  294

seq1  TAGATCATTTCTATTAAATATTTACACTATTAATTACAACAAAAAAGTTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCATTTCTATTAAATATTTACACTATTAATTACAACAAAAAAGTTA  344

seq1  GGTACAATAATCATCTTTGACATAGAACCTCTTGAGTTACAATATATGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAATAATCATCTTTGACATAGAACCTCTTGAGTTACAATATATGAA  394

seq1  TGGAACATTGTACTAGAAATATAATTCTAAATCTGTCATAATTTCTACAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATTGTACTAGAAATATAATTCTAAATCTGTCATAATTTCTACAG  444

seq1  AATAATTTGTTAAGATATGTATAAAAGTGGACAAAGAAAATTAAAACCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGTTAAGATATGTATAAAAGTGGACAAAGAAAATTAAAACCAA  494

seq1  TTAATAACATGTCAGAATGCCTTATGAGAAAAACATATGGCAAGATCAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACATGTCAGAATGCCTTATGAGAAAAACATATGGCAAGATCAAA  544

seq1  TCTTTAAAAGCAAATTATAGAATATACTGATATATATTGCTTGTCTAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAGCAAATTATAGAATATACTGATATATATTGCTTGTCTAATA  594

seq1  CTTGGGTTATAATATATAAAACATTTTAGAACAAAAATTATTTGTTAATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTATAATATATAAAACATTTTAGAACAAAAATTATTTGTTAATC  644

seq1  ATCTATGTCTAAGAATTATATGGTTGTTTTGTTTTTGTTTTGTTTTGTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTCTAAGAATTATATGGTTGTTTTGTTTTTGTTTTGTTTTGTTT  694

seq1  GTTTGTTTGAAGGGGTAGAGTTTTTTGCAGGGGTTGAGTTAAGATTCCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGAAGGGGTAGAGTTTTTTGCAGGGGTTGAGTTAAGATTCCAT  744

seq1  CTTACTGTAAGCCAGGATAACCTTGACTTCATAGCAATCATGCTTCAGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTAAGCCAGGATAACCTTGACTTCATAGCAATCATGCTTCAGAT  794

seq1  TCCCAATAGTTTTGGTTATTGTATATGCCATCCTGCTGAGTTCTCCATGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATAGTTTTGGTTATTGTATATGCCATCCTGCTGAGTTCTCCATGA  844

seq1  GTTACTATTTAAAGAGTGTGAATTTGGTTAGTGATCATTTCAATATACTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTTAAAGAGTGTGAATTTGGTTAGTGATCATTTCAATATACTC  894

seq1  ATTTATTCTTTTGGTAAATGAGGAAGTGGAGTTCAGTTTATTGTCAATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTTTTGGTAAATGAGGAAGTGGAGTTCAGTTTATTGTCAATCA  944

seq1  GGATTTTGTACTAGATGTGGAAGGAACAGATGCTTGTTTGAGGAAACAGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGTACTAGATGTGGAAGGAACAGATGCTTGTTTGAGGAAACAGT  994

seq1  AATCAAATACACCCCAAGGTTTATAGCCAAAATAGTCAGAAGTCTTTGTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATACACCCCAAGGTTTATAGCCAAAATAGTCAGAAGTCTTTGTA  1044

seq1  TATATTGAACAACATATGCCCAGCTCCTAAATTAATGTAAATCTACTTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGAACAACATATGCCCAGCTCCTAAATTAATGTAAATCTACTTGT  1094

seq1  ATGCATTGTTATACAGTACAGAATTC  1120
      ||||||||||||||||||||||||||
seq2  ATGCATTGTTATACAGTACAGAATTC  1120


seq1: chr2_86392539_86393687
seq2: B6Ng01-250B06.g_71_1227

seq1  GAATTCATGAACTCACTGCATTTGTAGATGTCTGTATTAGACTGGACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAACTCACTGCATTTGTAGATGTCTGTATTAGACTGGACTAG  50

seq1  TTGGGCTCACCAACATTTAAATCATGTTTTGAGAGAGCCTCTACAATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTCACCAACATTTAAATCATGTTTTGAGAGAGCCTCTACAATGCC  100

seq1  ATCCTTTCCTGAAGGAAAACAATGAAATGTTATTTTCTTTAATGCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCCTGAAGGAAAACAATGAAATGTTATTTTCTTTAATGCTAAAC  150

seq1  TTACACTTAGTTTGCCATATTATTTTAAACATCTTGCTACCTAACATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTAGTTTGCCATATTATTTTAAACATCTTGCTACCTAACATTGT  200

seq1  AACTTTTATTAATTCAGTGGGCTACAAATCACAGAAGAAAGTAGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATTAATTCAGTGGGCTACAAATCACAGAAGAAAGTAGAAGGAG  250

seq1  ATATTTGAAAATAAATGTTTCAGATGGAGAAGGATGATGAGGGAGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAAATAAATGTTTCAGATGGAGAAGGATGATGAGGGAGTCAAG  300

seq1  AATTGAAGTGACAATAATTAAGTTTTATTTTACTAATGTATGAAACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTGACAATAATTAAGTTTTATTTTACTAATGTATGAAACTGTT  350

seq1  GAATATATAAACCAAAATTAAATCAAAAGCAGTATAATTTCATAAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATAAACCAAAATTAAATCAAAAGCAGTATAATTTCATAAAACAG  400

seq1  AAGTACATGCTGATATATACAAATGTTACTGTGTTTATTTTAGTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGCTGATATATACAAATGTTACTGTGTTTATTTTAGTAGAAAA  450

seq1  TTCTGCTTGAAGATTCAAAATCCATTTTATACATACTAAAATTTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTGAAGATTCAAAATCCATTTTATACATACTAAAATTTCTCTCT  500

seq1  CTCATGCACAAGATGCATCAACAGATATACCTTCAGTTCTATAAGATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCACAAGATGCATCAACAGATATACCTTCAGTTCTATAAGATATA  550

seq1  CCCTCAGTTCTATAGTTACAAAATATGTTTATATTTTGCAACAGGCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTTCTATAGTTACAAAATATGTTTATATTTTGCAACAGGCTTAG  600

seq1  CAGTTATGTGTAGTTAATAATGTTCCAAGAAGGAAATTATTCTCCTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGTGTAGTTAATAATGTTCCAAGAAGGAAATTATTCTCCTCTAA  650

seq1  TAGAAGTATGATATTTGGAAACTGGATTAGCACCAGAATTCAAGTAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTATGATATTTGGAAACTGGATTAGCACCAGAATTCAAGTAGATA  700

seq1  ATACAAGTTTCACACACTGGGGCTTGTTCTACATTCCAGAGGAAAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTTTCACACACTGGGGCTTGTTCTACATTCCAGAGGAAAGTAAA  750

seq1  ATGGTGTATATTCAAGCCTGCTTTGAAGGATTTGTATGGCATTTAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTATATTCAAGCCTGCTTTGAAGGATTTGTATGGCATTTAAATTT  800

seq1  TAAGAAAATGTGTTGAATATTTTTTGCCATGTTCTTTGTAAAGCTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATGTGTTGAATATTTTTTGCCATGTTCTTTGTAAAGCTTCTTT  850

seq1  TACATCTTTGTTCCTCAGACTGTAGATCAGGGGATTCAAT-AAGGGGATG  899
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  TACATC-TTGTTCCTCAGACTGTAGATCAGGGGATTCAATAAAGGGGATG  899

seq1  ATTAAAGTATAAAA--TATAGATGATATTTTATCAGTATCAATTGAATGG  947
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  ATTAAAGTATAAAAATAATAGATGATATTTTATCAGTATCAATTGAATGG  949

seq1  CTA-GATTCAGGTTGTACATACATAAATATCAGTG-TCCCATAGAAT-AC  994
      ||| ||||||||||||||||||||||||||||||| ||| ||||||| ||
seq2  CTAGGATTCAGGTTGTACATACATAAATATCAGTGTTCCAATAGAATAAC  999

seq1  TG-TAACTACTGTC-AGGT-GTGA-CCCACAGGT-AGAGAAAGCTTTGCG  1039
      || ||||||||||| |||| |||| ||||||||| ||||||||| |||||
seq2  TGTTAACTACTGTCAAGGTGGTGACCCCACAGGTAAGAGAAAGCCTTGCG  1049

seq1  TCTGCCCTCAGCAGAGTTCAT-CCTGAGAACAG-CTATGAGAATGAGCAG  1087
      |||||||||||||||  |||| ||||||||||| ||||||| ||||||||
seq2  TCTGCCCTCAGCAGAAGTCATCCCTGAGAACAGCCTATGAG-ATGAGCAG  1098

seq1  GTAGGACATAAG--CACAACGACAAGGGAAGAAATCAAATCAAAAGCTGC  1135
      ||||||||| ||  ||||||||||||| |   ||||  ||||||||||||
seq2  GTAGGACATTAGGCCACAACGACAAGGTA--GAATC-CATCAAAAGCTGC  1145

seq1  AAAGATCATAACTA  1149
       |||||| ||||||
seq2  -AAGATC-TAACTA  1157


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