BAC Information

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BAC

Clone NameB6Ng01-250D21
Chromosome2 (Build37)
Map Location 119,050,307 - 119,169,675
singlet/doubletdoublet
Overlap genePpp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19
Downstream geneChac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250D21.bB6Ng01-250D21.g
ACCGA057843GA057844
length1,115144
definitionB6Ng01-250D21.b B6Ng01-250D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,050,307 - 119,051,426)(119,169,532 - 119,169,675)
sequence
gaattcaaagcccacctggaaaatttagtaatcccctatctcaaaattaa
gagtaaaagactggcaaaggggtgtccagggatgcagctgaggtggtaga
gtgcttgcctaacatgcacaggcaacctcacaaaccaggcatggggacac
aggtctgtacccagcacctgggagatggagcttgaagggttaggagttca
aggccattctcagttccataaaaagttcgaagccagtcttggctatatta
gatcctatctcaaagaaaacaaaaacaaaaaaaaacaaacaaacaaaaaa
aaaacccaaccaaccaacaaagcccagacaagcagacaagcagacagatg
gattaaatggatggaacttagtggtaaaggtcttgttttgcttgcctctt
atacatgaggtcctgagtttaatcttcagtacctttcatagtaatagtaa
taataacaataaattaataaaacctataaaatgtgtggtggcacaagcct
atactctcagcactcaggaagcagaagcaggaacattgctgagagtttga
ggccaacctgagctacatagtgaattctaggccaaccagggctacacagc
aagactctctcaaagcaccaagaataaaataaaagagacatggaaagtcc
ccggaagtgatcttattttaaataaaagctttacctgatgggattaacag
catatttaattccgtagaaaaacggtttgagaagcagcccagggtgtggt
catggagtagaaggtagaacagatccttggcctgcccatcatccatcatc
taacacttgtggatcagaatctcagagggcagaagagtcaggacacgtga
tgccagctactctgaagtcttggtttcaaggctattttaggccataaagc
cagatcctgtctcaaaactaaatacatcattaaaggttaggattgggggc
cactgagtggctgagtggctggagtgttcgctgcacaaacctgacacctg
agttgagcctgggatctacacaaaaatgagagaagccaacctcacagctg
tctctctccacactgtggcagactctcacataattattctatcatgtgtt
cccaccattacacac
aggttctctccaagagcagcaggttctcttgactgctgagacatctttcc
agcccctgtttttgtttagtttgattgttgttagttttgtttgcttgttt
gtttttgaggggcatatgttgtttgtggtggggtttggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119050307_119051426
seq2: B6Ng01-250D21.b_43_1157

seq1  GAATTCAAAGCCCACCTGGAAAATTTAGTAATCCCCTATCTCAAAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCCACCTGGAAAATTTAGTAATCCCCTATCTCAAAATTAA  50

seq1  GAGTAAAAGACTGGCAAAGGGGTGTCCAGGGATGCAGCTGAGGTGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAGACTGGCAAAGGGGTGTCCAGGGATGCAGCTGAGGTGGTAGA  100

seq1  GTGCTTGCCTAACATGCACAGGCAACCTCACAAACCAGGCATGGGGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCCTAACATGCACAGGCAACCTCACAAACCAGGCATGGGGACAC  150

seq1  AGGTCTGTACCCAGCACCTGGGAGATGGAGCTTGAAGGGTTAGGAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTACCCAGCACCTGGGAGATGGAGCTTGAAGGGTTAGGAGTTCA  200

seq1  AGGCCATTCTCAGTTCCATAAAAAGTTCGAAGCCAGTCTTGGCTATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTCTCAGTTCCATAAAAAGTTCGAAGCCAGTCTTGGCTATATTA  250

seq1  GATCCTATCTCAAAGAAAACAAAAACAAAAAAAAACAAACAAACAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATCTCAAAGAAAACAAAAACAAAAAAAAACAAACAAACAAAAAA  300

seq1  AAAACCCAACCAACCAACAAAGCCCAGACAAGCAGACAAGCAGACAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAACCAACCAACAAAGCCCAGACAAGCAGACAAGCAGACAGATG  350

seq1  GATTAAATGGATGGAACTTAGTGGTAAAGGTCTTGTTTTGCTTGCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATGGATGGAACTTAGTGGTAAAGGTCTTGTTTTGCTTGCCTCTT  400

seq1  ATACATGAGGTCCTGAGTTTAATCTTCAGTACCTTTCATAGTAATAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAGGTCCTGAGTTTAATCTTCAGTACCTTTCATAGTAATAGTAA  450

seq1  TAATAACAATAAATTAATAAAACCTATAAAATGTGTGGTGGCACAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATAAATTAATAAAACCTATAAAATGTGTGGTGGCACAAGCCT  500

seq1  ATACTCTCAGCACTCAGGAAGCAGAAGCAGGAACATTGCTGAGAGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCAGCACTCAGGAAGCAGAAGCAGGAACATTGCTGAGAGTTTGA  550

seq1  GGCCAACCTGAGCTACATAGTGAATTCTAGGCCAACCAGGGCTACACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGAGCTACATAGTGAATTCTAGGCCAACCAGGGCTACACAGC  600

seq1  AAGACTCTCTCAAAGCACCAAGAATAAAATAAAAGAGACATGGAAAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCTCAAAGCACCAAGAATAAAATAAAAGAGACATGGAAAGTCC  650

seq1  CCGGAAGTGATCTTATTTTAAATAAAAGCTTTACCTGATGGGATTAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGTGATCTTATTTTAAATAAAAGCTTTACCTGATGGGATTAACAG  700

seq1  CATATTTAATTCCGTAGAAAAACGGTTTGAGAAGCAGCCCAGGGTGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAATTCCGTAGAAAAACGGTTTGAGAAGCAGCCCAGGGTGTGGT  750

seq1  CATGGAGTAGAAGGTAGAACAGATCCTTGGCCTGCCCATCATCCATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTAGAAGGTAGAACAGATCCTTGGCCTGCCCATCATCCATCATC  800

seq1  TAACACTTGTGGATCAGAATCTCAGAGGGCAGAAGAGTCAGGACACGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTGTGGATCAGAATCTCAGAGGGCAGAAGAGTCAGGACACGTGA  850

seq1  TGCCAGCTACTCTGAAGTCTTGGTTTCAAGGCTATTTTAGGCCATAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTACTCTGAAGTCTTGGTTTCAAGGCTATTTTAGGCCATAAAGC  900

seq1  CAGATCCTGTCTCAAAACTAAATACATCATTAAAGGTTAGGATTGGGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTGTCTCAAAACTAAATACATCATTAAAGGTTAGGATTGGGGGC  950

seq1  CACTGAGGTGGCTGAGTGGCTGGAGGTGTTCGCTGCACAAACCTGACAAC  1000
      |||||| ||||||||||||||||| |||||||||||||||||||||| ||
seq2  CACTGA-GTGGCTGAGTGGCTGGA-GTGTTCGCTGCACAAACCTGAC-AC  997

seq1  CTGAGTTTGAGCCCTGGGATCTACACAAAAATGGAAGGAGAAAGCCAACC  1050
      ||||| ||||| |||||||||||||||||||||  ||    |||||||||
seq2  CTGAG-TTGAG-CCTGGGATCTACACAAAAATGAGAG----AAGCCAACC  1041

seq1  TCACCAAGCTGTCTCCTCTCCACACTGTGGCAGGAACTCTCACATATATA  1100
      ||||  |||||||| ||||||||||||||||||  |||||||||||  ||
seq2  TCAC--AGCTGTCT-CTCTCCACACTGTGGCAG--ACTCTCACATAATTA  1086

seq1  -TCTATCATGTGT--------ATACACAC  1120
       ||||||||||||         |||||||
seq2  TTCTATCATGTGTTCCCACCATTACACAC  1115

seq1: chr2_119169532_119169675
seq2: B6Ng01-250D21.g_71_214 (reverse)

seq1  CACCCCCCAAACCCCACCACAAACAACATATGCCCCTCAAAAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCAAACCCCACCACAAACAACATATGCCCCTCAAAAACAAACAA  50

seq1  GCAAACAAAACTAACAACAATCAAACTAAACAAAAACAGGGGCTGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAACTAACAACAATCAAACTAAACAAAAACAGGGGCTGGAAAG  100

seq1  ATGTCTCAGCAGTCAAGAGAACCTGCTGCTCTTGGAGAGAACCT  144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAGCAGTCAAGAGAACCTGCTGCTCTTGGAGAGAACCT  144