BAC Information

Click to search

BAC

Clone NameB6Ng01-250F14
Chromosome2 (Build37)
Map Location 118,967,338 - 119,124,262
singlet/doubletdoublet
Overlap gene1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51
Downstream geneLOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250F14.bB6Ng01-250F14.g
ACCGA057921GA057922
length1,2071,109
definitionB6Ng01-250F14.b B6Ng01-250F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,123,047 - 119,124,262)(118,967,338 - 118,968,450)
sequence
gaattccgtgagcagcagcgccacctgccagccagaggtgagattagctc
caggatttaggaagagggactgtaatctctaaacatttatagtcagagaa
ggaaacaagcaaaacctgcctcacccccagtgaaggacctacgccaaggc
tcaaaggcttgcaggactctggacttcttctttttatttttattttttta
atttaatttaattttttctagcctttgctggcctagaacttattatgtcg
actaggctggccgtgacctgacctgttctattccacacttggtgcaggca
gccttcttgtggcattccatcctttcttgggatcatatcctgttagcttc
agcatcaacacaaagccatcaagtccagggccaccattgtagcgtgattt
aatactctccctatttccccttgtcccaggtgtgccctcagcctcagggc
acccgacactggagccccaggtcacattagcatctccacatgcccactct
ccccacaagtgcctagggtctgcctgcttgctcctgggtcacctagttga
ggcagaagagggcgagctggaggtccagaggctgtggaaggacggaggaa
ggaaggacagcgggccactcagtccaggtgaacatgctgacgagaacaga
ggaactgttagatgtagtggttaaaaggatcacggctgatctcaccagct
cgggctgcctgggacgggcagctctaagacaggtctgaagcacagctcgg
cgttcgcacctgaaaacctcccggctgaagcttggctgcaaccccctcac
aatcgcagacccggcaagctcaaggaccgaacaccaaccagggcctggct
ttcgcaggagggtctggcagctggatccatgtctgtccacccacgcgggg
gaacttcctatagccagctgagtgctcctccctcatagcgctgcggatca
atgaagggccggtcgatagaccgaatcatcagctccccacagtaacacac
actcagcagccaccagctcatccaggtcaggccttgagctgctccgactg
gtccccaccgctgcagccccagcttctgcctccttggctttcacggagct
tgggtcggaagaggcgccgcccagcttgcgctgcagttctcagcctgact
gccttgaagcaaggaagcggtcgcaagcctgtaggaacgttcagctgtaa
acatgtg
gaattcagtggtaggatgcactcactggacaagaccctgtcttcagtccc
cagcaccacacgaacatagacaccagaagaccttactacctgagctctgc
ccacaatacccagtactagaagcagttgacaatggatgacttcccatgcc
caagttccttctgcatacacttgctaagtatcttgggggtaggagatgta
ttggacacttgtaggggctcatttccaaactgctgttccttaggactagc
ttttcattcttgagagcccagggaaagcaatggtacctagaaagttacct
ggcttctgagcagaacctttgcacggaaagtttcagccatagatggaaaa
acacagcctctcagcttacatctgagggtagagatttgaaaagcagagga
cagtggaagaagaatgaaccttttttaaaaaccaagacagatgctggaat
cagggcccaagacatgaggccttggcgcatgcctgttggcagaaggtgtc
tcctagagaccactatgagagtctcttgggtttatttttgtgtggtactg
agtatggaacccagggccttatgtgtgctaggcaaagatcctaccactgc
accacaccctcaggccaataagctaataagtcaactgttcaacttcctgg
gtataagctcacatctttttctcatgcaaaccaagcaaagaagccaatgt
ctgccaccagccagggatcacagctggggaaagagcttttgcaggacagg
aaatgcaagttatcccagcttctctgaagagcggagaaccaggtctgtag
cgagtgactcttggaacgatattcaatcctcttagccccagcagaacaca
gcttgtattttccctgccttgccctccagcacacctccctggcccctgcc
tagggttttaggaggcctgcagaaattcagaacagtgctccccttcctgg
gttcctgagcaattgcctctgggccaggtaaagaaagggttacactggct
tccctaaaacttcaagaatattattaccacagtggcacgcagcactctca
tctctttcttcagaagcagctctgcttcttcttttcttgaagacgtagat
tcagagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119123047_119124262
seq2: B6Ng01-250F14.b_46_1252 (reverse)

seq1  CACATGTTTCACGCTGACTGTCTCCTACAGGCTGTGCGGCCCGGCCTCCC  50
      |||||||||   |||||  || ||||||||||| |||| ||  || ||| 
seq2  CACATGTTTACAGCTGAACGT-TCCTACAGGCT-TGCGACC--GCTTCCT  46

seq1  TGCCTACAAGCAGGCCAGACTTGAGGAACTGCAGCGCAAGCTTGGGGCGG  100
      || || ||||   | ||| | ||| |||||||||||||||||  ||||||
seq2  TG-CTTCAAGGCAGTCAGGC-TGA-GAACTGCAGCGCAAGCT--GGGCGG  91

seq1  CGCCTCCTCCGACCAAAGGCTCCGTGAAGGCCAAGGAGGCAGAAGCTGGG  150
      |||||| ||||||| || |||||||||| |||||||||||||||||||||
seq2  CGCCTCTTCCGACCCAA-GCTCCGTGAAAGCCAAGGAGGCAGAAGCTGGG  140

seq1  GCTGCAGCGGTGGGGCCCAGTCGGGAGCAGCTCAAGG-CTGACCTGGATG  199
      ||||||||||||||| |||||| |||||||||||||| ||||||||||||
seq2  GCTGCAGCGGTGGGGACCAGTC-GGAGCAGCTCAAGGCCTGACCTGGATG  189

seq1  AGCTGGTGGCTGCTGAGTGTGTG-TACTGTGGGGAGCTGATGATTCGGTC  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTGGTGGCTGCTGAGTGTGTGTTACTGTGGGGAGCTGATGATTCGGTC  239

seq1  TATCGACCGGCCCTTCATTGATCCGCAGCGCTATGA-GGAGGAGCACCTC  297
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TATCGACCGGCCCTTCATTGATCCGCAGCGCTATGAGGGAGGAGCA-CTC  288

seq1  AGCTGGCTATAGGAAGTTCCCCCGCGTGGGTGGACAGACATGGATCCAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTATAGGAAGTTCCCCCGCGTGGGTGGACAGACATGGATCCAGC  338

seq1  TGCCAGACCCTCCTGCGAAAGCCAGGCCCTGGTTGGTGTTCGGTCCTTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACCCTCCTGCGAAAGCCAGGCCCTGGTTGGTGTTCGGTCCTTGA  388

seq1  GCTTGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCGGGTCTGCGATTGTGAGGGGGTTGCAGCCAAGCTTCAGCCGGG  438

seq1  AGGTTTTCAGGTGCGAACGCCGAGCTGTGCTTCAGACCTGTCTTAGAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCAGGTGCGAACGCCGAGCTGTGCTTCAGACCTGTCTTAGAGCT  488

seq1  GCCCGTCCCAGGCAGCCCGAGCTGGTGAGATCAGCCGTGATCCTTTTAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTCCCAGGCAGCCCGAGCTGGTGAGATCAGCCGTGATCCTTTTAAC  538

seq1  CACTACATCTAACAGTTCCTCTGTTCTCGTCAGCATGTTCACCTGGACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATCTAACAGTTCCTCTGTTCTCGTCAGCATGTTCACCTGGACTG  588

seq1  AGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCGCTGTCCTTCCTTCCTCCGTCCTTCCACAGCCTCTGGACCTC  638

seq1  CAGCTCGCCCTCTTCTGCCTCAACTAGGTGACCCAGGAGCAAGCAGGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCGCCCTCTTCTGCCTCAACTAGGTGACCCAGGAGCAAGCAGGCAG  688

seq1  ACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGCACTTGTGGGGAGAGTGGGCATGTGGAGATGCTAATGTGACC  738

seq1  TGGGGCTCCAGTGTCGGGTGCCCTGAGGCTGAGGGCACACCTGGGACAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCCAGTGTCGGGTGCCCTGAGGCTGAGGGCACACCTGGGACAAG  788

seq1  GGGAAATAGGGAGAGTATTAAATCACGCTACAATGGTGGCCCTGGACTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAGGGAGAGTATTAAATCACGCTACAATGGTGGCCCTGGACTTG  838

seq1  ATGGCTTTGTGTTGATGCTGAAGCTAACAGGATATGATCCCAAGAAAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTGTGTTGATGCTGAAGCTAACAGGATATGATCCCAAGAAAGGA  888

seq1  TGGAATGCCACAAGAAGGCTGCCTGCACCAAGTGTGGAATAGAACAGGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCCACAAGAAGGCTGCCTGCACCAAGTGTGGAATAGAACAGGTC  938

seq1  AGGTCACGGCCAGCCTAGTCGACATAATAAGTTCTAGGCCAGCAAAGGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACGGCCAGCCTAGTCGACATAATAAGTTCTAGGCCAGCAAAGGCT  988

seq1  AGAAAAAATTAAATTAAATTAAAAAAATAAAAATAAAAAGAAGAAGTCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATTAAATTAAATTAAAAAAATAAAAATAAAAAGAAGAAGTCCA  1038

seq1  GAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCACTGGGGGTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGCAAGCCTTTGAGCCTTGGCGTAGGTCCTTCACTGGGGGTGAG  1088

seq1  GCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAGAGATTACAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTTGCTTGTTTCCTTCTCTGACTATAAATGTTTAGAGATTACAG  1138

seq1  TCCCTCTTCCTAAATCCTGGAGCTAATCTCACCTCTGGCTGGCAGGTGGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCCTAAATCCTGGAGCTAATCTCACCTCTGGCTGGCAGGTGGC  1188

seq1  GCTGCTGCTCACGGAATTC  1216
      |||||||||||||||||||
seq2  GCTGCTGCTCACGGAATTC  1207

seq1: chr2_118967338_118968450
seq2: B6Ng01-250F14.g_68_1176

seq1  GAATTCAGTGGTAGGATGCACTCACTGGACAAGACCCTGTCTTCAGTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTAGGATGCACTCACTGGACAAGACCCTGTCTTCAGTCCC  50

seq1  CAGCACCACACGAACATAGACACCAGAAGACCTTACTACCTGAGCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACACGAACATAGACACCAGAAGACCTTACTACCTGAGCTCTGC  100

seq1  CCACAATACCCAGTACTAGAAGCAGTTGACAATGGATGACTTCCCATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATACCCAGTACTAGAAGCAGTTGACAATGGATGACTTCCCATGCC  150

seq1  CAAGTTCCTTCTGCATACACTTGCTAAGTATCTTGGGGGTAGGAGATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCTTCTGCATACACTTGCTAAGTATCTTGGGGGTAGGAGATGTA  200

seq1  TTGGACACTTGTAGGGGCTCATTTCCAAACTGCTGTTCCTTAGGACTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTTGTAGGGGCTCATTTCCAAACTGCTGTTCCTTAGGACTAGC  250

seq1  TTTTCATTCTTGAGAGCCCAGGGAAAGCAATGGTACCTAGAAAGTTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTTGAGAGCCCAGGGAAAGCAATGGTACCTAGAAAGTTACCT  300

seq1  GGCTTCTGAGCAGAACCTTTGCACGGAAAGTTTCAGCCATAGATGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGAGCAGAACCTTTGCACGGAAAGTTTCAGCCATAGATGGAAAA  350

seq1  ACACAGCCTCTCAGCTTACATCTGAGGGTAGAGATTTGAAAAGCAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTCTCAGCTTACATCTGAGGGTAGAGATTTGAAAAGCAGAGGA  400

seq1  CAGTGGAAGAAGAATGAACCTTTTTTAAAAACCAAGACAGATGCTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAGAATGAACCTTTTTTAAAAACCAAGACAGATGCTGGAAT  450

seq1  CAGGGCCCAAGACATGAGGCCTTGGCGCATGCCTGTTGGCAGAAGGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCAAGACATGAGGCCTTGGCGCATGCCTGTTGGCAGAAGGTGTC  500

seq1  TCCTAGAGACCACTATGAGAGTCTCTTGGGTTTATTTTTGTGTGGTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGACCACTATGAGAGTCTCTTGGGTTTATTTTTGTGTGGTACTG  550

seq1  AGTATGGAACCCAGGGCCTTATGTGTGCTAGGCAAAGATCCTACCACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAACCCAGGGCCTTATGTGTGCTAGGCAAAGATCCTACCACTGC  600

seq1  ACCACACCCTCAGGCCAATAAGCTAATAAGTCAACTGTTCAACTTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCCTCAGGCCAATAAGCTAATAAGTCAACTGTTCAACTTCCTGG  650

seq1  GTATAAGCTCACATCTTTTTCTCATGCAAACCAAGCAAAGAAGCCAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCTCACATCTTTTTCTCATGCAAACCAAGCAAAGAAGCCAATGT  700

seq1  CTGCCACCAGCCAGGGATCACAGCTGGGGAAAGAGCTTTTGCAGGACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCAGCCAGGGATCACAGCTGGGGAAAGAGCTTTTGCAGGACAGG  750

seq1  AAATGCAAGTTATCCCAGCTTCTCTGAAGAGCGGAGAACCAGGTCTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGTTATCCCAGCTTCTCTGAAGAGCGGAGAACCAGGTCTGTAG  800

seq1  CGAGTGACTCTTGGAACGATATTCAATCCTCTTAGCCCCAGCAGAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGACTCTTGGAACGATATTCAATCCTCTTAGCCCCAGCAGAACACA  850

seq1  GCTTGTATTTTCCCTGCCTTGCCCTCCAGCACACCTCCCTGGCCCCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATTTTCCCTGCCTTGCCCTCCAGCACACCTCCCTGGCCCCTGCC  900

seq1  TAGGGTTTTA-GAGGCCTGCAGAAATTCAGAACAGTGCTCCCCTTCCT-G  948
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  TAGGGTTTTAGGAGGCCTGCAGAAATTCAGAACAGTGCTCCCCTTCCTGG  950

seq1  GTTCCTGAAGCAATTGCCTCTGGCCAGGGTAAAGAAAGGGTTTACACTGG  998
      ||||||| ||||||||||||||| |  ||||||||||||| |||||||||
seq2  GTTCCTG-AGCAATTGCCTCTGGGCCAGGTAAAGAAAGGG-TTACACTGG  998

seq1  CTCCCCTAAAACTTC-AGGATATTATTACCACAGGTGGCACGCAGCACTC  1047
      || |||||||||||| || |||||||||||||| ||||||||||||||||
seq2  CTTCCCTAAAACTTCAAGAATATTATTACCACA-GTGGCACGCAGCACTC  1047

seq1  TCATCTCCTTTCTTCAG-AGCAGCCTCTGCTTCTTCTTTTCCTGGAAGAC  1096
      |||||| |||||||||| ||||| |||||||||||||||| || ||||||
seq2  TCATCT-CTTTCTTCAGAAGCAG-CTCTGCTTCTTCTTTT-CTTGAAGAC  1094

seq1  AGGTAGATCCAGAGTAA  1113
        |||||| ||||||||
seq2  --GTAGATTCAGAGTAA  1109