BAC Information

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BAC

Clone NameB6Ng01-250N11
Chromosome2 (Build37)
Map Location 66,634,686 - 66,736,490
singlet/doubletdoublet
Overlap geneLOC383707
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
Downstream geneLOC100039540, Gm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N11.bB6Ng01-250N11.g
ACCGA058272GA058273
length1,219802
definitionB6Ng01-250N11.b B6Ng01-250N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,735,277 - 66,736,490)(66,634,686 - 66,635,495)
sequence
gaattctttttattttttccagacttccttgaatctctctccagtgtctc
ctttggacgacccttcagtttgctcatggactgtgagttctaatccttcc
tcataaattaagcttgtctttctcctgctatagtgctatggaggagcttc
tgttctatcatcagtacccatttatttttagcatccttggcagtatcagc
atgtaccaaacatgcctggcacatttccagaccatcacttctccactgca
gaaaactgtctttaagcaaaacccatatcctctgctttctctccaatcta
taatactatgaatgaaaccatgcatgtttttctgtcacttatagtctctg
ttactcaatattggatatcttgaattgttctgccttgtctttattataaa
attaatccaaatgcattggaggccagatataaatgatgtagcaatttgat
aactatgatacttccactcttaccacaaacatcttatctgtactactact
atatagttaacttgcttctcagatattatttaatactctaagcatcgatt
ctctccattctgagagactggagaactgtggcaaagaaatccttaaccta
aatagaactgaagtagtcaattagtatactggaagtggcccaaagggaag
ggatattaacaatgattaaagcattcacacactgttgagcttttaggcag
gaagtaaagccgagttaacccattagcagtatacttttcttggagaagtg
gcataaacaaaagtttccaaggagcagtatgttggaggaccatttgaata
tagcctttcattcagcctccttctgaacaagaacccagatatgctttgca
catgtttaatacataccttcaattctatttctctaacttctatggagcaa
tattttagataagagcaaaaagcgtgaaataaattagggatgttcaagga
tcaccagacaaatatgataaagatttcctccagctgacttagatcatttc
ttagggatttgaagtcaatggttaaagaataagaaagtaatatatttaaa
aaaaagccgcagagatggtttcgtgtgaatagagcaaaaagaacaacagc
aacaatttagtgggtggaagaaaatgaaatgaaaggcagactttccttca
ggtgtgtgggttaggattaccgttatctactccagaaaattactactaaa
atatttgtttaaccccagg

gaattccatatttttttttcacccaatcaggatgagaggaatatctagaa
aaagctgtcagagatctatctgctttttgcttcattattttacatttata
aacgtaagtaacctaagaaacgtttcctggccttccttccacttggtctg
caggaagccctctacaccaagtatctctgttggtcactgtagtggctatt
cctggttgtcaatttgactatatttggaatgaactacaatccagaattgg
aaggctcaccagtgaccctaatctggaggctgggagatagaagtttctga
tctggaccttggtatggagatcttgaggcatagtggctatggattccaga
aggttaagacagggagatctctgagttcaaggtcatctaggattaaaggt
gtggtggctgggctacaccttctgctggagaccatataaggacattggga
gaagggagtctcgctctctttcctttgcctgcttgccgcgtgggactgag
taactgctagatccttggacttccattcacagcttctactgaaccattgt
tgggaactggactacagactgtaagtcatcaataaattactatatagaga
ctatccataagttctgtgactctagagaaccctgactaatacagtcactc
tcaaagacatggctgctttcctttcaaaagcaatgagaaggtcctttgag
acccatccattagcagtgtagttggagcatggaacaaatcttcaaagaat
ttaagttgaatccaaaatagaatgctctggggggcggggtggggggggga
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_66735277_66736490
seq2: B6Ng01-250N11.b_47_1265 (reverse)

seq1  CCTGGGGTTAA--CAATATTTTATAATTTAATTTTCTGGAGTTAGATTTA  48
      |||||||||||   |||||||||  |  ||||||||||||| |||||   
seq2  CCTGGGGTTAAACAAATATTTTAGTA-GTAATTTTCTGGAG-TAGAT---  45

seq1  CAGTGTATTCCTA--CCACA---CTGAAAGGAAAGTCCCTG-CTTTCATT  92
       |  ||| |||||  |||||   ||| |||||||||  ||| ||||||||
seq2  AACGGTAATCCTAACCCACACACCTG-AAGGAAAGT--CTGCCTTTCATT  92

seq1  TCA-TTTCT--CACCACCTTAAAATTG-TGCTGGTTTGTCTTTTTGCTCT  138
      ||| |||||  ||||  ||  |||||| |||| |||  ||||||||||||
seq2  TCATTTTCTTCCACCCACT--AAATTGTTGCT-GTTGTTCTTTTTGCTCT  139

seq1  A-TCACACGAAACCCATCTCTGCCGCTTTTTTTTAAATATATTACTTTCT  187
      | |||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  ATTCACACGAAA-CCATCTCTGCGGCTTTTTTTTAAATATATTACTTTCT  188

seq1  TA-TCTTT-ACCATTGACTTCAAATCCCTAAGAAATGATCTAAGTCAGCT  235
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTAACCATTGACTTCAAATCCCTAAGAAATGATCTAAGTCAGCT  238

seq1  GGA-GAAATCTTTATCATATTTGTCTGGTGATCC-TGAACATCCCTAATT  283
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAGGAAATCTTTATCATATTTGTCTGGTGATCCTTGAACATCCCTAATT  288

seq1  TATTTCACGCTTTTTGCTCTTATCTAAAATATTGCTCCATAGAAGTTAGA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACGCTTTTTGCTCTTATCTAAAATATTGCTCCATAGAAGTTAGA  338

seq1  GAAATAGAATTGAAGGTATGTATTAAACATGTGCAAAGCATATCTGGGTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAATTGAAGGTATGTATTAAACATGTGCAAAGCATATCTGGGTT  388

seq1  CTTGTTCAGAAGGAGGCTGAATGAAAGGCTATATTCAAATGGTCCTCCAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAGAAGGAGGCTGAATGAAAGGCTATATTCAAATGGTCCTCCAA  438

seq1  CATACTGCTCCTTGGAAACTTTTGTTTATGCCACTTCTCCAAGAAAAGTA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTCCTTGGAAACTTTTGTTTATGCCACTTCTCCAAGAAAAGTA  488

seq1  TACTGCTAATGGGTTAACTCGGCTTTACTTCCTGCCTAAAAGCTCAACAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTAATGGGTTAACTCGGCTTTACTTCCTGCCTAAAAGCTCAACAG  538

seq1  TGTGTGAATGCTTTAATCATTGTTAATATCCCTTCCCTTTGGGCCACTTC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATGCTTTAATCATTGTTAATATCCCTTCCCTTTGGGCCACTTC  588

seq1  CAGTATACTAATTGACTACTTCAGTTCTATTTAGGTTAAGGATTTCTTTG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACTAATTGACTACTTCAGTTCTATTTAGGTTAAGGATTTCTTTG  638

seq1  CCACAGTTCTCCAGTCTCTCAGAATGGAGAGAATCGATGCTTAGAGTATT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTCTCCAGTCTCTCAGAATGGAGAGAATCGATGCTTAGAGTATT  688

seq1  AAATAATATCTGAGAAGCAAGTTAACTATATAGTAGTAGTACAGATAAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATCTGAGAAGCAAGTTAACTATATAGTAGTAGTACAGATAAGA  738

seq1  TGTTTGTGGTAAGAGTGGAAGTATCATAGTTATCAAATTGCTACATCATT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGTAAGAGTGGAAGTATCATAGTTATCAAATTGCTACATCATT  788

seq1  TATATCTGGCCTCCAATGCATTTGGATTAATTTTATAATAAAGACAAGGC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGCCTCCAATGCATTTGGATTAATTTTATAATAAAGACAAGGC  838

seq1  AGAACAATTCAAGATATCCAATATTGAGTAACAGAGACTATAAGTGACAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATTCAAGATATCCAATATTGAGTAACAGAGACTATAAGTGACAG  888

seq1  AAAAACATGCATGGTTTCATTCATAGTATTATAGATTGGAGAGAAAGCAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGCATGGTTTCATTCATAGTATTATAGATTGGAGAGAAAGCAG  938

seq1  AGGATATGGGTTTTGCTTAAAGACAGTTTTCTGCAGTGGAGAAGTGATGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGGGTTTTGCTTAAAGACAGTTTTCTGCAGTGGAGAAGTGATGG  988

seq1  TCTGGAAATGTGCCAGGCATGTTTGGTACATGCTGATACTGCCAAGGATG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATGTGCCAGGCATGTTTGGTACATGCTGATACTGCCAAGGATG  1038

seq1  CTAAAAATAAATGGGTACTGATGATAGAACAGAAGCTCCTCCATAGCACT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATAAATGGGTACTGATGATAGAACAGAAGCTCCTCCATAGCACT  1088

seq1  ATAGCAGGAGAAAGACAAGCTTAATTTATGAGGAAGGATTAGAACTCACA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGAGAAAGACAAGCTTAATTTATGAGGAAGGATTAGAACTCACA  1138

seq1  GTCCATGAGCAAACTGAAGGGTCGTCCAAAGGAGACACTGGAGAGAGATT  1183
      |                 ||||||||||||||||||||||||||||||||
seq2  GNNNNNNNNNNNNNNNNNGGGTCGTCCAAAGGAGACACTGGAGAGAGATT  1188

seq1  CAAGGAAGTCTGGAAAAAATAAAAAGAATTC  1214
      |||||||||||||||||||||||||||||||
seq2  CAAGGAAGTCTGGAAAAAATAAAAAGAATTC  1219


seq1: chr2_66634686_66635495
seq2: B6Ng01-250N11.g_68_869

seq1  GAATTCCATATTTTTTTTTCACCCAATCAGGATGAGAGGAATATCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTTTTTTTTCACCCAATCAGGATGAGAGGAATATCTAGAA  50

seq1  AAAGCTGTCAGAGATCTATCTGCTTTTTGCTTCATTATTTTACATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCAGAGATCTATCTGCTTTTTGCTTCATTATTTTACATTTATA  100

seq1  AACGTAAGTAACCTAAGAAACGTTTCCTGGCCTTCCTTCCACTTGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAGTAACCTAAGAAACGTTTCCTGGCCTTCCTTCCACTTGGTCTG  150

seq1  CAGGAAGCCCTCTACACCAAGTATCTCTGTTGGTCACTGTAGTGGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCCCTCTACACCAAGTATCTCTGTTGGTCACTGTAGTGGCTATT  200

seq1  CCTGGTTGTCAATTTGACTATATTTGGAATGAACTACAATCCAGAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGTCAATTTGACTATATTTGGAATGAACTACAATCCAGAATTGG  250

seq1  AAGGCTCACCAGTGACCCTAATCTGGAGGCTGGGAGATAGAAGTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCAGTGACCCTAATCTGGAGGCTGGGAGATAGAAGTTTCTGA  300

seq1  TCTGGACCTTGGTATGGAGATCTTGAGGCATAGTGGCTATGGATTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACCTTGGTATGGAGATCTTGAGGCATAGTGGCTATGGATTCCAGA  350

seq1  AGGTTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTAGGATTAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTAGGATTAAAGGT  400

seq1  GTGGTGGCTGGGCTACACCTTCTGCTGGAGACCATATAAGGACATTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCTGGGCTACACCTTCTGCTGGAGACCATATAAGGACATTGGGA  450

seq1  GAAGGGAGTCTCGCTCTCTTTCCTTTGCCTGCTTGCCGCGTGGGACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGTCTCGCTCTCTTTCCTTTGCCTGCTTGCCGCGTGGGACTGAG  500

seq1  TAACTGCTAGATCCTTGGACTTCCATTCACAGCTTCTACTGAACCATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTAGATCCTTGGACTTCCATTCACAGCTTCTACTGAACCATTGT  550

seq1  TGGGAACTGGACTACAGACTGTAAGTCATCAATAAATTACTATATAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTGGACTACAGACTGTAAGTCATCAATAAATTACTATATAGAGA  600

seq1  CTATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGTCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGTCACTC  650

seq1  TCAAAGACATGGCTGCTTTCCTTTCAAAAGCAATGAGAAGGTCCTTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACATGGCTGCTTTCCTTTCAAAAGCAATGAGAAGGTCCTTTGAG  700

seq1  ACCCATCCATTAGCAGTGTAGTTGGAGCATGGAACAAATCTTCAAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCATTAGCAGTGTAGTTGGAGCATGGAACAAATCTTCAAAGAAT  750

seq1  TTAAGTTGAATCCAAAATAGAATGCTCTGGGGGGCGGGGTGGGGGGGAGG  800
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TTAAGTTGAATCCAAAATAGAATGCTCTGGGGGGCGGGGTGGGGGGG---  797

seq1  GTGGTGGAGG  810
           |||||
seq2  -----GGAGG  802


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