BAC Information

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BAC

Clone NameB6Ng01-250N18
Chromosome2 (Build37)
Map Location 141,121,479 - 141,260,708
singlet/doubletdoublet
Overlap genenone
Upstream geneSel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N18.bB6Ng01-250N18.g
ACCGA058286GA058287
length7721,118
definitionB6Ng01-250N18.b B6Ng01-250N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,121,479 - 141,122,251)(141,259,591 - 141,260,708)
sequence
gaattcctcaaaatgttttaggactgccttggctgtcttgccactgatat
atttgcacatcagtgtttactgcactctaattgatagcaaggaagtggaa
gccaactagatgtccatcagtggatcagccaataacaaaaagcgtggtgc
atagaaaaagattgaattttattcagctattaaaatgaaatcatgaaaaa
gtgagggaaaataatggacttggaaagtgatctattaagtgatgtgaccc
aaactaatgagcaaaaatagcatgttgtcccttatttgcagatcttagcc
tatagtgtgtatgtacatgcatatgtatttgtatatacatatatatgtat
ttgcacacatacacatgtgcatgtgtgtgtgtgtgagagagagagacaga
gagacagagagagagacagagagagaacacacatgagcaggtatacatgt
gggtgtagtataaaatttagaatggagattaagagtagttaacattgggt
gatgaggggaaatagcattaagtcaaaaagtcatatgggtcatgaaagaa
tatataaagttcatgtttccctagtttcaactccatcttagtcttttctt
ttctgtggtaggtgaagaattatttagcatagtataaaaccttaaatgaa
gctcattggcttcacaatgatcattctaagtgagtgagttcactgagatg
attagtgtttggaactggtcaagtgtttcagtggcttctttatattaacc
atagagtgttttttgtgtgtgt

gaattcagtggggccaatcgaatactgagctttagcctgccggattccca
aatagcaaagacattctatttctcctcgtggaagctagcgcagtcaccag
aactcggtcgagcttcagaggacttttcaagcacagatgggacatctgcc
agttcctatggtgatcaggctaagattgaggacacgcctaaaaaaaccac
ttccctagttaaagccacaggaatcagcagcagcagttgagtaaatggaa
ataaacaaatccaaagaaaccaggacaactgagtttacactgtagtttta
aaaaaaactctaaaactcttctctattaaggtctgaatgactcactcatg
ccagttcatttccaattcccaagacaatgcttctaattgctgaaagtgat
ttacgcaaattgtgtcaagtaactacaacctcagtggcacattagacata
aaacaagcagagtgaggacaaggttatggcactcctggttctgctacgca
acagcagaagttgggatatggaaggatttctcttgaaggctcaattattt
gagagaaaatgaatgattttattagaaataaaaaaaaactcttttagtct
gatgtgagcaaataaccctcctgtaaagattaagtcttccatagcacaag
caacccagaatattcattcgctacagcttctactctttgaattttaccct
agaggcccgaagaagaatagcttcagcctgtaatagtccattaccaaacg
tttcacatgcattaaattcttagtatttcataaatactgtaactaggaaa
aaaatcattcatgccttacatttgggaaaatggacccttgtggaatattg
ccctttttcaacctccgcaaacctaagttaaatatttataaaacaaaata
tattgaaactatttcaactcttctgggagtagaacagacacttaaaaaga
atcagcctgaacttagtggtctatgtgcattataagtgaattgcatattc
aacactctttagaaatattgaagctggaagcatttctaaattttcagctc
acaccaaagcaataaggattatgttatggctctagtgattctggcattgc
aatctaactctcgattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141121479_141122251
seq2: B6Ng01-250N18.b_46_817

seq1  GAATTCCTCAAAATGTTTTAGGACTGCCTTGGCTGTCTTGCCACTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAAATGTTTTAGGACTGCCTTGGCTGTCTTGCCACTGATAT  50

seq1  ATTTGCACATCAGTGTTTACTGCACTCTAATTGATAGCAAGGAAGTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACATCAGTGTTTACTGCACTCTAATTGATAGCAAGGAAGTGGAA  100

seq1  GCCAACTAGATGTCCATCAGTGGATCAGCCAATAACAAAAAGCGTGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTAGATGTCCATCAGTGGATCAGCCAATAACAAAAAGCGTGGTGC  150

seq1  ATAGAAAAAGATTGAATTTTATTCAGCTATTAAAATGAAATCATGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAGATTGAATTTTATTCAGCTATTAAAATGAAATCATGAAAAA  200

seq1  GTGAGGGAAAATAATGGACTTGGAAAGTGATCTATTAAGTGATGTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAAAATAATGGACTTGGAAAGTGATCTATTAAGTGATGTGACCC  250

seq1  AAACTAATGAGCAAAAATAGCATGTTGTCCCTTATTTGCAGATCTTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGAGCAAAAATAGCATGTTGTCCCTTATTTGCAGATCTTAGCC  300

seq1  TATAGTGTGTATGTACATGCATATGTATTTGTATATACATATATATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTGTATGTACATGCATATGTATTTGTATATACATATATATGTAT  350

seq1  TTGCACACATACACATGTGCATGTGTGTGTGTGTGAGAGAGAGAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACATACACATGTGCATGTGTGTGTGTGTGAGAGAGAGAGACAGA  400

seq1  GAGACAGAGAGAGAGACAGAGAGAGAACACACATGAGCAGGTATACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGAGAGACAGAGAGAGAACACACATGAGCAGGTATACATGT  450

seq1  GGGTGTAGTATAAAATTTAGAATGGAGATTAAGAGTAGTTAACATTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGTATAAAATTTAGAATGGAGATTAAGAGTAGTTAACATTGGGT  500

seq1  GATGAGGGGAAATAGCATTAAGTCAAAAAGTCATATGGGTCATGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGGAAATAGCATTAAGTCAAAAAGTCATATGGGTCATGAAAGAA  550

seq1  TATATAAAGTTCATGTTTCCCTAGTTTCAACTCCATCTTAGTCTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGTTCATGTTTCCCTAGTTTCAACTCCATCTTAGTCTTTTCTT  600

seq1  TTCTGTGGTAGGTGAAGAATTATTTAGCATAGTATAAAACCTTAAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGTAGGTGAAGAATTATTTAGCATAGTATAAAACCTTAAATGAA  650

seq1  GCTCATTGGCTTCACAATGATCATTCTAAGTGAGTGAGTTCACTGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGGCTTCACAATGATCATTCTAAGTGAGTGAGTTCACTGAGATG  700

seq1  ATTAGTGTTTGGAACTGGTCAAGTGTTTCAGTGGCTTCTTTATATTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTTGGAACTGGTCAAGTGTTTCAGTGGCTTCTTTATATTAACC  750

seq1  ATAGAGTGTTTTTGTGTGTGTGT  773
      ||||||||||||| |||||||||
seq2  ATAGAGTGTTTTT-TGTGTGTGT  772


seq1: chr2_141259591_141260708
seq2: B6Ng01-250N18.g_68_1185 (reverse)

seq1  TTAATCGAAGAG-TAGAATGCCAATGCCAGAATTCACTAGAGGCCAT-AC  48
      ||||||| |||| |||| || ||||||||||| |||||||| ||||| ||
seq2  TTAATCG-AGAGTTAGATTG-CAATGCCAGAA-TCACTAGA-GCCATAAC  46

seq1  AT-ATCCTTA-TGCTTTGGTGTGAGCTGAAAATTTAGAAATGCTCTCAGC  96
      || ||||||| |||||||||||||||||||||||||||||||||  ||||
seq2  ATAATCCTTATTGCTTTGGTGTGAGCTGAAAATTTAGAAATGCTTCCAGC  96

seq1  TTCAATATTTCTAAAGAGTTGTTGAATATGCAAATTCAC-TATAATGCAC  145
      |||||||||||||||||| |||||||||||| ||||||| ||||||||||
seq2  TTCAATATTTCTAAAGAG-TGTTGAATATGC-AATTCACTTATAATGCAC  144

seq1  ATAAGACCACTAAGTTCAGGCTGATTCTTTTTAAGTGTCTGTTCTACTCC  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AGACCACTAAGTTCAGGCTGATTCTTTTTAAGTGTCTGTTCTACTCC  193

seq1  CAGAAGAGTTGAAATAGTTTCAATATATTTTGTTTTATAAATATTTAACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGTTGAAATAGTTTCAATATATTTTGTTTTATAAATATTTAACT  243

seq1  TAGGTTTGCGGAGGTTGAAAAA-GGCAATATTCCACAAGGGTCCATTTT-  293
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  TAGGTTTGCGGAGGTTGAAAAAGGGCAATATTCCACAAGGGTCCATTTTC  293

seq1  CCAAATGTAAGGCATGAATGATTTTTTTCCTAGTTACAGTATTTATGAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTAAGGCATGAATGATTTTTTTCCTAGTTACAGTATTTATGAAA  343

seq1  TACTAAGAATTTAATGCATGTGAAACGTTTGGTAATGGACTATTACAGGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGAATTTAATGCATGTGAAACGTTTGGTAATGGACTATTACAGGC  393

seq1  TGAAGCTATTCTTCTTCGGGCCTCTAGGGTAAAATTCAAAGAGTAGAAGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTATTCTTCTTCGGGCCTCTAGGGTAAAATTCAAAGAGTAGAAGC  443

seq1  TGTAGCGAATGAATATTCTGGGTTGCTTGTGCTATGGAAGACTTAATCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCGAATGAATATTCTGGGTTGCTTGTGCTATGGAAGACTTAATCTT  493

seq1  TACAGGAGGGTTATTTGCTCACATCAGACTAAAAGAGTTTTTTTTTATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGGGTTATTTGCTCACATCAGACTAAAAGAGTTTTTTTTTATTT  543

seq1  CTAATAAAATCATTCATTTTCTCTCAAATAATTGAGCCTTCAAGAGAAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAATCATTCATTTTCTCTCAAATAATTGAGCCTTCAAGAGAAAT  593

seq1  CCTTCCATATCCCAACTTCTGCTGTTGCGTAGCAGAACCAGGAGTGCCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATATCCCAACTTCTGCTGTTGCGTAGCAGAACCAGGAGTGCCAT  643

seq1  AACCTTGTCCTCACTCTGCTTGTTTTATGTCTAATGTGCCACTGAGGTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTCCTCACTCTGCTTGTTTTATGTCTAATGTGCCACTGAGGTTG  693

seq1  TAGTTACTTGACACAATTTGCGTAAATCACTTTCAGCAATTAGAAGCATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTGACACAATTTGCGTAAATCACTTTCAGCAATTAGAAGCATT  743

seq1  GTCTTGGGAATTGGAAATGAACTGGCATGAGTGAGTCATTCAGACCTTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGAATTGGAAATGAACTGGCATGAGTGAGTCATTCAGACCTTAA  793

seq1  TAGAGAAGAGTTTTAGAGTTTTTTTTAAAACTACAGTGTAAACTCAGTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAGTTTTAGAGTTTTTTTTAAAACTACAGTGTAAACTCAGTTG  843

seq1  TCCTGGTTTCTTTGGATTTGTTTATTTCCATTTACTCAACTGCTGCTGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTCTTTGGATTTGTTTATTTCCATTTACTCAACTGCTGCTGCT  893

seq1  GATTCCTGTGGCTTTAACTAGGGAAGTGGTTTTTTTAGGCGTGTCCTCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGTGGCTTTAACTAGGGAAGTGGTTTTTTTAGGCGTGTCCTCAA  943

seq1  TCTTAGCCTGATCACCATAGGAACTGGCAGATGTCCCATCTGTGCTTGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCTGATCACCATAGGAACTGGCAGATGTCCCATCTGTGCTTGAA  993

seq1  AAGTCCTCTGAAGCTCGACCGAGTTCTGGTGACTGCGCTAGCTTCCACGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCTGAAGCTCGACCGAGTTCTGGTGACTGCGCTAGCTTCCACGA  1043

seq1  GGAGAAATAGAATGTCTTTGCTATTTGGGAATCCGGCAGGCTAAAGCTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATAGAATGTCTTTGCTATTTGGGAATCCGGCAGGCTAAAGCTCA  1093

seq1  GTATTCGATTGGCCCCACTGAATTC  1118
      |||||||||||||||||||||||||
seq2  GTATTCGATTGGCCCCACTGAATTC  1118


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