BAC Information

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BAC

Clone NameB6Ng01-250O17
Chromosome5 (Build37)2 (Build37)
Map Location 8,037,011 - 8,037,895151,205,056 - 151,205,934
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4
Downstream geneSri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250O17.bB6Ng01-250O17.g
ACCGA058329GA058330
length1,149886
definitionB6Ng01-250O17.b B6Ng01-250O17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,037,011 - 8,037,895)(151,205,056 - 151,205,934)
sequence
gaattccaggacagccagagctatacagagaaaccctgtctcaaacaaat
aaacagggaaaaaaaaacaaaacaagaaacagctgaatgacaccctacag
aatcacacaaaatctttgctaactacaaatgtgacaaaggattattatct
ataatatacaaaggaaaaaaaactaaataacaagaaatcaaacctaatta
gtaagtggaccccaagaataaacagacagttttcaaaagataaagttcaa
atggccaatgcacacatgaaaagcgttcagtatcactaaccaacagaaaa
atgcactgtggaactacactgaaattccattttaccccattcagaatggc
agtcttgagaaaatgacagtaggtgctggtgagggtgtagacaaagaagc
agctgaatattgctaaatgaaaggataaaccagtctagacaaaatggaaa
tcaatatgcaaccccctcaaaagccagaaagtagttgtatcatgtgaccc
agctctacctaccattggtatttaccaaaggacttcaagtaaacacatca
cagagagacttgtacagcaatatttattacagcactcatggcagacacta
tggagctagtttaggtattcgctaacggaagaacaggctaagaaaatatg
atatacttacgcaatacaattttattcagccataaagaatatagttatgc
catttgtaggaaaatagacacattgggagattattatattgagctactca
aagacaaatattacatgagttctctgacttgtgcttcctatatttttata
gattcataaaatcagctatgcatatatgacattaagtagaaatgaaactg
tgtaaggaaatcaagggactaaagagaagggagagcagaaaggggagtca
tgaaacaggaacacacccaaagttcatcatatacctgtgtgagatgcgtg
agaatgtgtgagaatggagaatgcgtgagaagtgtgagaatgtgtagagc
ctttgtgaaatccagtaccacgtgcatgagctacaccagtttttaaggcg
ttattagtttccacatttttcttcctcagtacatgatgatgttcttccag
aggaatacgcctgctccatgacctaattcacatgcctggactcagctca
gaattcagaaaggcaagagtggaaccattccctgccacctctgcctgcac
tggaacatggaacctcatcaccccactgagaggaccccatatgaccataa
atcatgtaggaaaaacacctggtgtcctctttaaaagattagtacttata
agcatttgaagacattgaacttaggaagacagaaaatggagaaattctgg
aaatggaatatctaggtaagaaaacaggaactacagatgcaagcatcccc
tataaaatacaagagatggaaaagagaatctcagggctgaagttacaatg
aaatatatccatcagaaatgttgaataccaaacatccctgatacaaaaca
acaggaaaccgggataccatgaaaaggccaaacctatgaataatagcaag
aaaaggagaagaaccctagttcaaaggcctagaaaatattttcaacaaaa
tcagagaagaaaaatatccactctaatgaaggagatgcctagagagatac
aagcagcatacggaacagtaaataaatattaccagaaagaaggcctacag
agccaatgtactggactcaagtggactcactatctgggtctgagttagat
actctgcatgtattttctggttgtgtagcttagtgttctcacaggacagt
ccactgtggcagtgagggcatctctgaccctcttggatgcgcttaagacc
ctcttcctcctcctggtttgcctcgtccagctgtgatacgagggtttgtg
catagttttcttgtaacttgttaggccatgttcactggatccttgaaagg
ccagctcttttatatcaagggctatggaggaggaggagtgaatatgatag
agacaagaggtggggaggggaacgttggaggaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_8037011_8037895
seq2: B6Ng01-250O17.b_324_1197

seq1  TTCAGTATCACTAACCAACAGAAAAATGCACTGTGGAACTACACTGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATCACTAACCAACAGAAAAATGCACTGTGGAACTACACTGAAAT  50

seq1  TCCATTTTACCCCATTCAGAATGGCAGTCTTGAGAAAATGACAGTAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTACCCCATTCAGAATGGCAGTCTTGAGAAAATGACAGTAGGTG  100

seq1  CTGGTGAGGGTGTAGACAAAGAAGCAGCTGAATATTGCTAAATGAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGGGTGTAGACAAAGAAGCAGCTGAATATTGCTAAATGAAAGGA  150

seq1  TAAACCAGTCTAGACAAAATGGAAATCAATATGCAACCCCCTCAAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGTCTAGACAAAATGGAAATCAATATGCAACCCCCTCAAAAGCC  200

seq1  AGAAAGTAGTTGTATCATGTGACCCAGCTCTACCTACCATTGGTATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAGTTGTATCATGTGACCCAGCTCTACCTACCATTGGTATTTAC  250

seq1  CAAAGGACTTCAAGTAAACACATCACAGAGAGACTTGTACAGCAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACTTCAAGTAAACACATCACAGAGAGACTTGTACAGCAATATTT  300

seq1  ATTACAGCACTCATGGCAGACACTATGGAGCTAGTTTAGGTATTCGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCACTCATGGCAGACACTATGGAGCTAGTTTAGGTATTCGCTAA  350

seq1  CGGAAGAACAGGCTAAGAAAATATGATATACTTACGCAATACAATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAACAGGCTAAGAAAATATGATATACTTACGCAATACAATTTTAT  400

seq1  TCAGCCATAAAGAATATAGTTATGCCATTTGTAGGAAAATAGACACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATAAAGAATATAGTTATGCCATTTGTAGGAAAATAGACACATTG  450

seq1  GGAGATTATTATATTGAGCTACTCAAAGACAAATATTACATGAGTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTATTATATTGAGCTACTCAAAGACAAATATTACATGAGTTCTCT  500

seq1  GACTTGTGCTTCCTATATTTTTATAGATTCATAAAATCAGCTATGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGCTTCCTATATTTTTATAGATTCATAAAATCAGCTATGCATAT  550

seq1  ATGACATTAAGTAGAAATGAAACTGTGTAAGGAAATCAAAGGGACTAAAG  600
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGACATTAAGTAGAAATGAAACTGTGTAAGGAAATC-AAGGGACTAAAG  599

seq1  AGAAGGGAGAGCAGAAAGGGGAGTCATGAAACAGGAACACACCCAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAGAGCAGAAAGGGGAGTCATGAAACAGGAACACACCCAAAGTT  649

seq1  CATCATATACCTGTGTGAGAATGCGTGAGAATGTGTGAGAATGGAGAATG  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATCATATACCTGTGTGAG-ATGCGTGAGAATGTGTGAGAATGGAGAATG  698

seq1  CGTGAGAAAGTGTGAGAATGTGTAAGAGCCTTTGTGAAATCCAGTACCAC  750
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  CGTGAG-AAGTGTGAGAATGTGT-AGAGCCTTTGTGAAATCCAGTACCAC  746

seq1  GTGCAATGAGGCTACACCAAGTTTTTTAAAGGCGTTA-TAGTTT-CACAT  798
      |||| |||| |||||||| |||||||  ||||||||| |||||| |||||
seq2  GTGC-ATGA-GCTACACC-AGTTTTT--AAGGCGTTATTAGTTTCCACAT  791

seq1  TTTTCT--CTCAGTACCATTGATGATGTCTTTCCCCAGAGGAATACGCCT  846
      ||||||  ||||||||   |||||||||  ||  ||||||||||||||| 
seq2  TTTTCTTCCTCAGTAC--ATGATGATGTTCTT--CCAGAGGAATACGCC-  836

seq1  TGCTTCCCATGAC--TATTCACATGCTTGACATTCAGCTCA  885
      ||||  |||||||   |||||||||| ||  | ||||||||
seq2  TGCT--CCATGACCTAATTCACATGCCTG-GACTCAGCTCA  874

seq1: chr2_151205056_151205934
seq2: B6Ng01-250O17.g_68_953

seq1  GAATTCAGAAAGGCAAGAGTGGTACCATTCCCTGCCACCTCTACCTGCAC  50
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  GAATTCAGAAAGGCAAGAGTGGAACCATTCCCTGCCACCTCTGCCTGCAC  50

seq1  TGGAACATGGAACTTCATCACCCCACTGAAAGGACCTCATATGACCATAA  100
      ||||||||||||| ||||||||||||||| |||||| |||||||||||||
seq2  TGGAACATGGAACCTCATCACCCCACTGAGAGGACCCCATATGACCATAA  100

seq1  ATCATGTAGGAAAAACACCTGGTGTCCTCTTTAAAACATTAGTACTTATA  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCATGTAGGAAAAACACCTGGTGTCCTCTTTAAAAGATTAGTACTTATA  150

seq1  AGCATTTGAAGACATTGATCTTAGGAAGACACAAAATGGAGAAATTCTGG  200
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  AGCATTTGAAGACATTGAACTTAGGAAGACAGAAAATGGAGAAATTCTGG  200

seq1  AAATGGAATATCTAGGTAAGAAAACAGGAACTGCAGATGCAGGCATCACC  250
      |||||||||||||||||||||||||||||||| |||||||| ||||| ||
seq2  AAATGGAATATCTAGGTAAGAAAACAGGAACTACAGATGCAAGCATCCCC  250

seq1  TATAAAATGCAAGAGATGGAAAAGAGAATCACAGGACTGAACTTACAATG  300
      |||||||| ||||||||||||||||||||| |||| ||||| ||||||||
seq2  TATAAAATACAAGAGATGGAAAAGAGAATCTCAGGGCTGAAGTTACAATG  300

seq1  AAATATATCCATCAAAAATGTTGAATTCCAAATATCCCTGATACAAAACA  350
      |||||||||||||| ||||||||||| ||||| |||||||||||||||||
seq2  AAATATATCCATCAGAAATGTTGAATACCAAACATCCCTGATACAAAACA  350

seq1  ACAGGAAATTGGGATACCATGAAAAGAACAAACCTATGAATAATAGCAAG  400
      ||||||||  ||||||||||||||||  ||||||||||||||||||||||
seq2  ACAGGAAACCGGGATACCATGAAAAGGCCAAACCTATGAATAATAGCAAG  400

seq1  AAAAGGAAAAGAACCCTAGTTCAAAGGCCTAGAAAATATTTTCAACAAAA  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGAAGAACCCTAGTTCAAAGGCCTAGAAAATATTTTCAACAAAA  450

seq1  TTAGAGAAGATAATTTTCCACTCTAAAGAAGGAGATGCCTATAGAGATGC  500
      | |||||||| || | |||||||||| |||||||||||||| |||||| |
seq2  TCAGAGAAGAAAAATATCCACTCTAATGAAGGAGATGCCTAGAGAGATAC  500

seq1  AAGCAGCATACAGAACAGTAAATAAATTTTACCAGAAAGAAGGCCTACAG  550
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  AAGCAGCATACGGAACAGTAAATAAATATTACCAGAAAGAAGGCCTACAG  550

seq1  AGCCAATGGACTGAACTCAAGTGGACTCACTATCTGGGTCTGAGTAAGAT  600
      |||||||| |||| ||||||||||||||||||||||||||||||| ||||
seq2  AGCCAATGTACTGGACTCAAGTGGACTCACTATCTGGGTCTGAGTTAGAT  600

seq1  ACTCTGCATGTATTTTATGGTTGTGTAGCTTAGTGTTCTCACAGAATAGA  650
      |||||||||||||||| ||||||||||||||||||||||||||| | || 
seq2  ACTCTGCATGTATTTTCTGGTTGTGTAGCTTAGTGTTCTCACAGGACAGT  650

seq1  CCACTGTGGCAGTGTGGGCATCTCTGACCCTCTTGGATGCGCTT-GGA--  697
      |||||||||||||| |||||||||||||||||||||||||||||  ||  
seq2  CCACTGTGGCAGTGAGGGCATCTCTGACCCTCTTGGATGCGCTTAAGACC  700

seq1  ---TGCCTCCTCCTGGTTTGCCTTGTCCAGCTGTGATACGAGGGTTTGTG  744
         | |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTTCCTCCTCCTGGTTTGCCTCGTCCAGCTGTGATACGAGGGTTTGTG  750

seq1  CATAGTTTTCTTGTAACTTGTTAGGCCATGTTCACTGGATCCTTGAGAGG  794
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAGTTTTCTTGTAACTTGTTAGGCCATGTTCACTGGATCCTTGAAAGG  800

seq1  CCAGCTCTTTTATATCAAGGGCTATGGAGGAGGAGGAGTGAATATGATAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTTTTATATCAAGGGCTATGGAGGAGGAGGAGTGAATATGATAG  850

seq1  AGACAAGAGGTGGGGAGGGGAAC-ATGGAGGAATGG  879
      |||||||||||||||||||||||  |||||||||||
seq2  AGACAAGAGGTGGGGAGGGGAACGTTGGAGGAATGG  886