BAC Information

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BAC

Clone NameB6Ng01-251J07
Chromosome2 (Build37)
Map Location 137,916,799 - 138,042,179
singlet/doubletdoublet
Overlap genenone
Upstream geneJag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251J07.bB6Ng01-251J07.g
ACCGA058805GA058806
length1,1281,046
definitionB6Ng01-251J07.b B6Ng01-251J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,041,045 - 138,042,179)(137,916,799 - 137,917,834)
sequence
gaattccttgcttctaaccagatcttgataattcagttttccacccttac
atttataggataatctagaaaataacttttgcagaaggattaaatgggag
aaatagaagaatgataagaaaacaagggcactgctgtagtgttgcctaga
ccaaagtcacaggaagccttgactaaaaacagttataaagagaaaatatt
ggctcacacccaaaatgaagacaacatctttaattctcttcattacctct
ctacactctatatgtgcgaccttgcacaaaacaatctcattaacgagaac
gctccattatggaccctccattctctgggcaggaccgttttggatctgac
aggtttcaccacatctgctggaacaattctgtcttaagccaatatcattc
ctagccttgatgaggataacagctacccaaatgtttttatccccagtctt
attccacatataaggctattatgaaaacagtggccagagccaatcttgta
aacaaataaaaaagagtaattcagagcttcagaatttctcgtttcaaaca
gctccatttcctggtaactggtaaagctgtgtactctctctgggtggact
ccacccacttctctggtgtcttcctttgcctgtcttcctcagccattgtt
ctgtgtccatactgcttttcctgttctctgaactctgccagccttgtttt
cctttgagctttgtactggctgctccccctgcctgcaactatttttgctg
aatacccccagggctggctcttgtccatctggtcccagtccagatgtttt
ctgctcaaagcaacatttttttttcctttccttccttgttccaaatttca
tcatgttccatcacatcacgaatgcatttccatcaaggcaaatatctaga
tagatcttattttctgccctatcttttcctccctgccttcagttatctct
tactgaagctcactctccccctgtccttgtgcgtatgatagtggcttctc
tcccatcatataatctgaacacacacaaaacatcagcagggcaggtccag
tagacacagaatcgttttagaaaggagacatttctagctatggcatatat
cttgagtgtcaaattgggggaaagaaaa

gaattcagtagaaatggtaatatcagcagttgcccagatattgcagcaca
gaacatgcagcccaggctgctcacactaggtcaatgctgttctggaccat
tgagatgcatatccccagcccatttctgtagttttaactttttaatattg
ccactagaggtgcaggggacctgcataagtatagaagtggacagttgctt
taaacctccattccctggtcataagataagaagtttagaagtaagtaaat
ggcaacaaaaatccaagcataatgactaacaataaagaagcacacagcaa
gacgatctttaatcagaaaggaaattaaaacctgtcaaggaggcagtgaa
aaacaacagctccagacaaaagctgagaacataggagagctttatgcaga
aatgtacagccttaataactttcaccattacagagaaacctgcctgggga
tgtaatgtttcatttagatataaatatgaagagcaaaattaaataacggt
taagcaaatggaaattttaaatatttcaaatggggacataaacgaggaaa
tgattctaaaaggtaagtttctgaaagcaccaatgaaacaaatacaacaa
aaaatgcaatttatgattttgataaagaacaaagagtgaaacccacaatg
agcaggatgaggaacagatggagtccatgtatcccttgtgtccatgaccc
tggatacaaagtagatgaaaccaccagagaaaatgccactccacattgta
gtaacatggagatgaatagctttatttttgcttagcttttctcagtttct
acctattttaatcaatcacatttgcttctctgcccatattctctgttctt
agttggaaaattcttccatcaatcatgaattatttcagagattggataca
gggtttgtatgccagagaagctgagacagagaaattaaagagttttgagc
aagccttactagccctgtctatataatgatatccagcaaaaaaacagagg
gggaagaaggaaaggttttggggagaagaaaggagaagggaaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138041045_138042179
seq2: B6Ng01-251J07.b_46_1173 (reverse)

seq1  TTTTCTTTCCCCCATTTTGGACACTC-AGATATATGCCATAGCCTTAGAA  49
      |||||||||||||| ||| ||||||| ||||||||||||||||  |||||
seq2  TTTTCTTTCCCCCAATTT-GACACTCAAGATATATGCCATAGC--TAGAA  47

seq1  ATGTCTCCTTTCTAAAACGATTCTGTGTCTACTGGGCCCTGCCCTGCTGG  99
      ||||||||||||||||||||||||||||||||| || |||||||||||| 
seq2  ATGTCTCCTTTCTAAAACGATTCTGTGTCTACT-GGACCTGCCCTGCTGA  96

seq1  TGTTTTGTTGTTGTTGTTCAGATTATATGATGGGGAGAGAAGCCACTATC  149
      ||||||| |||   ||||||||||||||||| ||||||||||||||||||
seq2  TGTTTTG-TGT--GTGTTCAGATTATATGAT-GGGAGAGAAGCCACTATC  142

seq1  ATAACGCACAAGGACAGGGGGAGAGTGAGCTTCAGTAAGAGATAACTGAA  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-ACGCACAAGGACAGGGGGAGAGTGAGCTTCAGTAAGAGATAACTGAA  191

seq1  GGCAGGGAGGAAAAGATAGGGCAGAAAATAAGATCTATCTAGATATTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAGGAAAAGATAGGGCAGAAAATAAGATCTATCTAGATATTTGC  241

seq1  CTTGATGGAAATGCATTCGTGATGTGATGGAACATGATGAAATTTGGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGGAAATGCATTCGTGATGTGATGGAACATGATGAAATTTGGAAC  291

seq1  AAGGAAGGAAAGG-AAAAAAAATGTTGCTTTGAGCAGAAAACATCTGGAC  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAAGGAAAAAAAAATGTTGCTTTGAGCAGAAAACATCTGGAC  341

seq1  TGGGACCAGATGGACAAGAGCCAGCCCTGGGGGTATTCAGCAAAAATAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCAGATGGACAAGAGCCAGCCCTGGGGGTATTCAGCAAAAATAGT  391

seq1  TGCAGGCAGGGGGAGCAGCCAGTACAAAGCTCAAAGGAAAACAAGGCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGGGGGAGCAGCCAGTACAAAGCTCAAAGGAAAACAAGGCTGG  441

seq1  CAGAGTTCAGAGAACAGGAAAAGCAGTATGGACACAGAACAATGGCTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCAGAGAACAGGAAAAGCAGTATGGACACAGAACAATGGCTGAG  491

seq1  GAAGACAGGCAAAGGAAGACACCAGAGAAGTGGGTGGAGTCCACCCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGGCAAAGGAAGACACCAGAGAAGTGGGTGGAGTCCACCCAGAG  541

seq1  AGAGTACACAGCTTTACCAGTTACCAGGAAATGGAGCTGTTTGAAACGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACACAGCTTTACCAGTTACCAGGAAATGGAGCTGTTTGAAACGAG  591

seq1  AAATTCTGAAGCTCTGAATTACTCTTTTTTATTTGTTTACAAGATTGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGAAGCTCTGAATTACTCTTTTTTATTTGTTTACAAGATTGGCT  641

seq1  CTGGCCACTGTTTTCATAATAGCCTTATATGTGGAATAAGACTGGGGATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACTGTTTTCATAATAGCCTTATATGTGGAATAAGACTGGGGATA  691

seq1  AAAACATTTGGGTAGCTGTTATCCTCATCAAGGCTAGGAATGATATTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGGGTAGCTGTTATCCTCATCAAGGCTAGGAATGATATTGGC  741

seq1  TTAAGACAGAATTGTTCCAGCAGATGTGGTGAAACCTGTCAGATCCAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGAATTGTTCCAGCAGATGTGGTGAAACCTGTCAGATCCAAAA  791

seq1  CGGTCCTGCCCAGAGAATGGAGGGTCCATAATGGAGCGTTCTCGTTAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCTGCCCAGAGAATGGAGGGTCCATAATGGAGCGTTCTCGTTAATG  841

seq1  AGATTGTTTTGTGCAAGGTCGCACATATAGAGTGTAGAGAGGTAATGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTTGTGCAAGGTCGCACATATAGAGTGTAGAGAGGTAATGAAG  891

seq1  AGAATTAAAGATGTTGTCTTCATTTTGGGTGTGAGCCAATATTTTCTCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAAGATGTTGTCTTCATTTTGGGTGTGAGCCAATATTTTCTCTT  941

seq1  TATAACTGTTTTTAGTCAAGGCTTCCTGTGACTTTGGTCTAGGCAACACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGTTTTTAGTCAAGGCTTCCTGTGACTTTGGTCTAGGCAACACT  991

seq1  ACAGCAGTGCCCTTGTTTTCTTATCATTCTTCTATTTCTCCCATTTAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGCCCTTGTTTTCTTATCATTCTTCTATTTCTCCCATTTAATC  1041

seq1  CTTCTGCAAAAGTTATTTTCTAGATTATCCTATAAATGTAAGGGTGGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAAAAGTTATTTTCTAGATTATCCTATAAATGTAAGGGTGGAAA  1091

seq1  ACTGAATTATCAAGATCTGGTTAGAAGCAAGGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTATCAAGATCTGGTTAGAAGCAAGGAATTC  1128


seq1: chr2_137916799_137917834
seq2: B6Ng01-251J07.g_67_1112

seq1  GAATTCAGTAGAAATGGTAATATCAGCAGTTGCCCAGATATTGCAGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGAAATGGTAATATCAGCAGTTGCCCAGATATTGCAGCACA  50

seq1  GAACATGCAGCCCAGGCTGCTCACACTAGGTCAATGCTGTTCTGGACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCAGCCCAGGCTGCTCACACTAGGTCAATGCTGTTCTGGACCAT  100

seq1  TGAGATGCATATCCCCAGCCCATTTCTGTAGTTTTAACTTTTTAATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCATATCCCCAGCCCATTTCTGTAGTTTTAACTTTTTAATATTG  150

seq1  CCACTAGAGGTGCAGGGGACCTGCATAAGTATAGAAGTGGACAGTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGAGGTGCAGGGGACCTGCATAAGTATAGAAGTGGACAGTTGCTT  200

seq1  TAAACCTCCATTCCCTGGTCATAAGATAAGAAGTTTAGAAGTAAGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCCATTCCCTGGTCATAAGATAAGAAGTTTAGAAGTAAGTAAAT  250

seq1  GGCAACAAAAATCCAAGCATAATGACTAACAATAAAGAAGCACACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAAAAATCCAAGCATAATGACTAACAATAAAGAAGCACACAGCAA  300

seq1  GACGATCTTTAATCAGAAAGGAAATTAAAACCTGTCAAGGAGGCAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATCTTTAATCAGAAAGGAAATTAAAACCTGTCAAGGAGGCAGTGAA  350

seq1  AAACAACAGCTCCAGACAAAAGCTGAGAACATAGGAGAGCTTTATGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGCTCCAGACAAAAGCTGAGAACATAGGAGAGCTTTATGCAGA  400

seq1  AATGTACAGCCTTAATAACTTTCACCATTACAGAGAAACCTGCCTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAGCCTTAATAACTTTCACCATTACAGAGAAACCTGCCTGGGGA  450

seq1  TGTAATGTTTCATTTAGATATAAATATGAAGAGCAAAATTAAATAACGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTTTCATTTAGATATAAATATGAAGAGCAAAATTAAATAACGGT  500

seq1  TAAGCAAATGGAAATTTTAAATATTTCAAATGGGGACATAAACGAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATGGAAATTTTAAATATTTCAAATGGGGACATAAACGAGGAAA  550

seq1  TGATTCTAAAAGGTAAGTTTCTGAAAGCACCAATGAAACAAATACAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAAAAGGTAAGTTTCTGAAAGCACCAATGAAACAAATACAACAA  600

seq1  AAAATGCAATTTATGATTTTGATAAAGAACAAAGAGTGAAACCCACAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAATTTATGATTTTGATAAAGAACAAAGAGTGAAACCCACAATG  650

seq1  AGCAGGATGAGGAACAGATGGAGTCCATGTATCCCTTGTGTCCATGACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATGAGGAACAGATGGAGTCCATGTATCCCTTGTGTCCATGACCC  700

seq1  TGGATACAAAGTAGATGAAACCACCAGAGAAAATGCCACTCCACATTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACAAAGTAGATGAAACCACCAGAGAAAATGCCACTCCACATTGTA  750

seq1  GTAACATGGAGATGAATAGCTTTATTTTTGCTTAGCTTTTCTCAGTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATGGAGATGAATAGCTTTATTTTTGCTTAGCTTTTCTCAGTTTCT  800

seq1  ACCTATTTTAATCAATCACATTTGCTTCTCTGCCCATATTCTCTGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTAATCAATCACATTTGCTTCTCTGCCCATATTCTCTGTTCTT  850

seq1  AGTTGGAAAATTCTTCCATCAATCATGAATTATTTCAGAGATTGGATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAAAATTCTTCCATCAATCATGAATTATTTCAGAGATTGGATACA  900

seq1  GGG-TTGTATGCCAGAGAAGCTGAGACAGAGAAA-TAAAGAGTTTTGAGC  948
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGTTTGTATGCCAGAGAAGCTGAGACAGAGAAATTAAAGAGTTTTGAGC  950

seq1  AAGCC-TACTAGCCTGTTCTATATAATGATATCCAGC-AAAAAACAGAGG  996
      ||||| ||||||||   |||||||||||||||||||| ||||||||||||
seq2  AAGCCTTACTAGCCCTGTCTATATAATGATATCCAGCAAAAAAACAGAGG  1000

seq1  GGGAAG-AGGAAAGGTTTGGGAGAG----AAGGAGAA-GGAAAGGG  1036
      |||||| ||||||||||| || |||    |||||||| ||||||||
seq2  GGGAAGAAGGAAAGGTTTTGGGGAGAAGAAAGGAGAAGGGAAAGGG  1046


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