BAC Information

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BAC

Clone NameB6Ng01-252A10
Chromosome2 (Build37)
Map Location 106,505,842 - 106,613,437
singlet/doubletdoublet
Overlap genenone
Upstream genePax6os1, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252A10.bB6Ng01-252A10.g
ACCGA059136GA059137
length1,105686
definitionB6Ng01-252A10.b B6Ng01-252A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,612,312 - 106,613,437)(106,505,842 - 106,506,525)
sequence
gaattcctttattaacccagaagtgcctaggacaaggctctatgattagc
tgatgagtatattggatctcttcccctgcaaaagctttcagaagcaactg
agaggaaggtgttcctcccagtgatgattataaaataagtggcaattatt
ctcctgaataattaggggaacaaatgcaaatcccgtgtgtttgcatttta
catcattaagcatggcgaagaccaaattaaataaaaataacacaaggcat
aaaggccatatcttttaagagaaataactattttagtggcttttaaaatt
ccctcctccttaaccttgcaaataggaaaaaaaaaaaaaaaaaaaaaaaa
agagcccgttttgaaatcactgctgtccttctgtgcttacatagaactgg
ggcccgtgagtgcggggctccggcacacaaggcttctgaggggtggggct
gcagacagcagagcagaaggctgacagtagaaatgcagtctctgccttaa
cagcaccactggggctagatgaaaatgctcttctagaacttgattaaaac
taaattgaaaaagaacatatttggctaatattacattagactaaaatata
gaaatgaactctaatactctcgaaatctaataagaaaaagccatctcaat
ttccaaactttcaaagcgtcttctttaaatgcatcacagatcaatttaca
tggtacttttgccaataagcaaaaccaaatcacaggttgcaattggctta
tattggaaagtgtgagagcgaatgctagcaaatgcaattacggaaaacaa
actccattttctcccctctgaagggaatttcaggaatatttattgccatc
aaataatatttctgaaggcatcaatacacaattctatttcttttcagagt
ccccacaccctgaaaatcgaatccacctctgcagaagtatcttgaaattt
agagagagctacgaaggggatatttacctcgcacacacatctacatcatt
ttaatatttgccacctgacagagtgctttgagtcaaattaagatcgataa
tggacttttccgtttatactcaattggaatggagcactgcaagataactc
acgag
gaattcagactaattttttatttcaaaaataaaaagaactgaaacatgcc
taattcttcttgagaaatgtgatgtgataggggggttgatgtgtatttga
aaagtaaagcttttagaatagaaaagaaaagcatggaagttgcttttctt
tttaatctcctcaggaaccataggttggtcacaaggcaccagccagtggt
accatctaagagttcaattacagaagaaaagataagaaaaagtcttagtg
gatgaccagtagacattgcctggatctttatttggaggactctgcaaatc
aagagaaagtgatgagacgccatgacagaggaaagagccgctggtagcat
tctggtgtgtttgctgcagtttgtcttgctttgtttacagagtcctgaaa
ttgtgtgtcagctgagagagtagccagcttagaattcagtttcatccagc
cattcattcaacaaaacgcttagttgaaaggttggcaattaagctgagat
ctgcaagatgcgcccaggtaaggaaagaacaaaaaagcaccacgtgtaaa
tgaagaagcatcaatgctctacaacgtggaatgttctgaggaaaaagtca
agttggtgccgttgttacttaacctctatacagaaattggcttgaagtgt
tatgaagaatatgaacagtaaccactttttgtaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106612312_106613437
seq2: B6Ng01-252A10.b_46_1150 (reverse)

seq1  CTCGTGAGTTTATCCTTGCAGTGCTTCATTACAATTTTGAGTTATAAAAG  50
      |||||||| |||| ||||||||||| |||| |||  ||||| ||||||  
seq2  CTCGTGAG-TTAT-CTTGCAGTGCTCCATTCCAA--TTGAG-TATAAA--  43

seq1  GGGAAAAGTCAATTTTATCGAATCCTAAATTTGACTCAAAGCCACTTCCT  100
       ||||||||| |  |||||||   || |||||||||||||| ||||  ||
seq2  CGGAAAAGTCCA--TTATCGA--TCTTAATTTGACTCAAAG-CACT--CT  86

seq1  GTCCAGGGTGCAAATTATTAAAATTGATGTAGGATGTGTGTGCGAGGT-A  149
      || ||||  ||||| |||||||| ||||||| |||||||||||||||| |
seq2  GT-CAGGTGGCAAA-TATTAAAA-TGATGTA-GATGTGTGTGCGAGGTAA  132

seq1  ATATCCCCCTTCGTAGGCCTCTCTCTAAATTTCAAGATAC-TCTGCAGA-  197
      |||| |||||||||||  |||||||||||||||||||||| |||||||| 
seq2  ATAT-CCCCTTCGTAG--CTCTCTCTAAATTTCAAGATACTTCTGCAGAG  179

seq1  GTGGATTCGATTTTCAGGGTGTGGGGACTCTGAAAAGAAAATAGAATTGT  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGGATTCGATTTTCAGGGTGTGGGGACTCTGAAAAG-AAATAGAATTGT  228

seq1  GTATTGATGCCTTCAGAAATATTATTTGATGGCAATAAAATATTCCCTGA  297
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  GTATTGATGCCTTCAGAAATATTATTTGATGGCAAT-AAATATT-CCTGA  276

seq1  AATTCCCTTCAGAGGGGAGAAAATGGAGTTTGTTTTCCGTAATTGCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTTCAGAGGGGAGAAAATGGAGTTTGTTTTCCGTAATTGCATTT  326

seq1  GCTAGCATTCGCTCTCACACTTTCCAATATAAGCCAATTGCAACCTGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATTCGCTCTCACACTTTCCAATATAAGCCAATTGCAACCTGTGA  376

seq1  TTTGGTTTTGCTTATTGGCAAAAGTACCATGTAAATTGATCTGTGATGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGCTTATTGGCAAAAGTACCATGTAAATTGATCTGTGATGCA  426

seq1  TTTAAAGAAGACGCTTTGAAAGTTTGGAAATTGAGATGGCTTTTTCTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGACGCTTTGAAAGTTTGGAAATTGAGATGGCTTTTTCTTAT  476

seq1  TAGATTTCGAGAGTATTAGAGTTCATTTCTATATTTTAGTCTAATGTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCGAGAGTATTAGAGTTCATTTCTATATTTTAGTCTAATGTAAT  526

seq1  ATTAGCCAAATATGTTCTTTTTCAATTTAGTTTTAATCAAGTTCTAGAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCAAATATGTTCTTTTTCAATTTAGTTTTAATCAAGTTCTAGAAG  576

seq1  AGCATTTTCATCTAGCCCCAGTGGTGCTGTTAAGGCAGAGACTGCATTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCATCTAGCCCCAGTGGTGCTGTTAAGGCAGAGACTGCATTTC  626

seq1  TACTGTCAGCCTTCTGCTCTGCTGTCTGCAGCCCCACCCCTCAGAAGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAGCCTTCTGCTCTGCTGTCTGCAGCCCCACCCCTCAGAAGCCT  676

seq1  TGTGTGCCGGAGCCCCGCACTCACGGGCCCCAGTTCTATGTAAGCACAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCGGAGCCCCGCACTCACGGGCCCCAGTTCTATGTAAGCACAGA  726

seq1  AGGACAGCAGTGATTTCAAAACGGGCTCTTTTTTTTTTTTTTTTTTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCAGTGATTTCAAAACGGGCTCTTTTTTTTTTTTTTTTTTTTTT  776

seq1  TTTCCTATTTGCAAGGTTAAGGAGGAGGGAATTTTAAAAGCCACTAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTGCAAGGTTAAGGAGGAGGGAATTTTAAAAGCCACTAAAAT  826

seq1  AGTTATTTCTCTTAAAAGATATGGCCTTTATGCCTTGTGTTATTTTTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCTCTTAAAAGATATGGCCTTTATGCCTTGTGTTATTTTTATT  876

seq1  TAATTTGGTCTTCGCCATGCTTAATGATGTAAAATGCAAACACACGGGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGTCTTCGCCATGCTTAATGATGTAAAATGCAAACACACGGGAT  926

seq1  TTGCATTTGTTCCCCTAATTATTCAGGAGAATAATTGCCACTTATTTTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTGTTCCCCTAATTATTCAGGAGAATAATTGCCACTTATTTTAT  976

seq1  AATCATCACTGGGAGGAACACCTTCCTCTCAGTTGCTTCTGAAAGCTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCACTGGGAGGAACACCTTCCTCTCAGTTGCTTCTGAAAGCTTTT  1026

seq1  GCAGGGGAAGAGATCCAATATACTCATCAGCTAATCATAGAGCCTTGTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGAAGAGATCCAATATACTCATCAGCTAATCATAGAGCCTTGTCC  1076

seq1  TAGGCACTTCTGGGTTAATAAAGGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  TAGGCACTTCTGGGTTAATAAAGGAATTC  1105

seq1: chr2_106505842_106506525
seq2: B6Ng01-252A10.g_73_758

seq1  GAATTCAGACTAATTTTTTATTTCAAAAATAAAAAGAACTGAAACATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTAATTTTTTATTTCAAAAATAAAAAGAACTGAAACATGCC  50

seq1  TAATTCTTCTTGAGAAATGTGATGTGATAGGGGGGTTGATGTGTATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCTTGAGAAATGTGATGTGATAGGGGGGTTGATGTGTATTTGA  100

seq1  AAAGTAAAGCTTTTAGAATAGAAAAGAAAAGCATGGAAGTTGCTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAGCTTTTAGAATAGAAAAGAAAAGCATGGAAGTTGCTTTTCTT  150

seq1  TTTAATCTCCTCAGGAACCATAGGTTGGTCACAAGGCACCAGCCAGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCCTCAGGAACCATAGGTTGGTCACAAGGCACCAGCCAGTGGT  200

seq1  ACCATCTAAGAGTTCAATTACAGAAGAAAAGATAAGAAAAAGTCTTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTAAGAGTTCAATTACAGAAGAAAAGATAAGAAAAAGTCTTAGTG  250

seq1  GATGACCAGTAGACATTGCCTGGATCTTTATTTGGAGGACTCTGCAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAGTAGACATTGCCTGGATCTTTATTTGGAGGACTCTGCAAATC  300

seq1  AAGAGAAAGTGATGAGACGCCATGACAGAGGAAAGAGCCGCTGGTAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGTGATGAGACGCCATGACAGAGGAAAGAGCCGCTGGTAGCAT  350

seq1  TCTGGTGTGTTTGCTGCAGTTTGTCTTGCTTTGTTTACAGAGTCCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTGTTTGCTGCAGTTTGTCTTGCTTTGTTTACAGAGTCCTGAAA  400

seq1  TTGTGTGTCAGCTGAGAGAGTAGCCAGCTTAGAATTCAGTTTCATCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTCAGCTGAGAGAGTAGCCAGCTTAGAATTCAGTTTCATCCAGC  450

seq1  CATTCATTCAACAAAACGCTTAGTTGAAAGGTTGGCAATTAAGCTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCAACAAAACGCTTAGTTGAAAGGTTGGCAATTAAGCTGAGAT  500

seq1  CTGCAAGATGCGCCCAGGTAAGGAAAGAACAAAAAAGCACCACGTGAAAA  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGCAAGATGCGCCCAGGTAAGGAAAGAACAAAAAAGCACCACGTGTAAA  550

seq1  TGAAGAAGCATCAAGGCTCTACAACGTGGAATGTTCTGAGG-AAAAGTCA  599
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TGAAGAAGCATCAATGCTCTACAACGTGGAATGTTCTGAGGAAAAAGTCA  600

seq1  AGTTGGTGCCGTTGTAACTTAAACTCTAAACAGAAATTGGCATGAAGTGT  649
      ||||||||||||||| |||||| ||||| |||||||||||| ||||||||
seq2  AGTTGGTGCCGTTGTTACTTAACCTCTATACAGAAATTGGCTTGAAGTGT  650

seq1  TATGAAGAATATGAACAGTAACCAC-TTTTGTAACA  684
      ||||||||||||||||||||||||| ||||||||||
seq2  TATGAAGAATATGAACAGTAACCACTTTTTGTAACA  686