BAC Information

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BAC

Clone NameB6Ng01-252B11
Chromosome2 (Build37)
Map Location 93,861,739 - 93,998,708
singlet/doubletdoublet
Overlap geneHsd17b12
Upstream geneLOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252B11.bB6Ng01-252B11.g
ACCGA059183GA059184
length4191,095
definitionB6Ng01-252B11.b B6Ng01-252B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,861,739 - 93,862,163)(93,997,612 - 93,998,708)
sequence
agttggtctggtttaattagttcatttgttaataaattaatgaaaaaaat
ggggctggagagatgggtcagccgttaagagttactgctcttgcagagga
ccttggtttggttcccagcacccatatcagatggcccacaactgcctcta
attgtaattccaaaggatccagcacctctgcagatactagcacacacatg
gtgcacatgtaggcatgcacgaatactcataaatgaaacaaaaatgagaa
aaagtacatttctgtaagttcaaggctatcctggtctacataaccagttc
catgtcagccagggctacattgagaaaccttgcctcaaggggaaaaaaaa
aagcagacctgaacttaggaagtagatatgttggtcctggtgggtgtgag
ggagtgggaaagggggttg
gaattccgaattattgggaacaagtataaagttcattgtgggagctaagg
cagtcattcaaaaaaatggagcgaaagcgtgctctgcagacaaaggggaa
ccgtaaaccttcatctgaaaagtctgaggaattaacaatccgaaagcggt
tattactaagacgtaatcacaagcactactccagctcctcccggacttct
actatattcttccctttccggttccattccttcctgaaatgtgagctaaa
cccagttaggtatcactggccaatcagcgcgcagccttccgcagtcgtaa
gggccgcctctgccaatgagagatccctgcgcttcggtggtgcgaggtaa
agcttgtgggcggagccaaacgttgagcggcttgtgagcgagccactgtc
ttaatacggaaatgcggctctgagcgcgccgaaggggattgtgggcgggg
ctacgaaacgaaggctaaccaataggagacatagtacgcttacaggaaag
agaagtcaccaatagacacatggatatgactatgtaggcgggtcttagac
ctaaagcgttcaaaaaatcacgtctattcgctgcgtcttcgccgtcacgg
cggcaccgcctcctcgtcccattcattctttttttttttttccttcccca
ttcaccgtagtagtgaggcctagtcacgagccatggagtgcgctcccccg
gcggccggcttcctgtactgggtgggcgcgagcaccattgcctacctggc
cctgcgagcctcgtactcgctcttcaggccttccaggtgtggtgcgtggg
caacgaggccttggtcggtccgcgactcggagaatgggcaggtgagtgga
accacaagccgcgaccacgctgtggcccttgttcccctgtcgctcgcgct
cagcgagccgctctggagcgcgaaactttctccagactctgagcgtcact
ggcgggggtggggtgatctgacctgctgctgcctggtgggcacggaagga
gacctttctaactctcccggactgtcttggtggagccctcctggcagcga
ccgatcagggccattgtccgctgtgtcctggcagtgttattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93861739_93862163
seq2: B6Ng01-252B11.b_45_469

seq1  GAATTCAGTTGGTCTGGTTTAATTAGTTCATTTGTTAATAAATTAATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGTCTGGTTTAATTAGTTCATTTGTTAATAAATTAATGAA  50

seq1  AAAAATGGGGCTGGAGAGATGGGTCAGCCGTTAAGAGTTACTGCTCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGGCTGGAGAGATGGGTCAGCCGTTAAGAGTTACTGCTCTTGC  100

seq1  AGAGGACCTTGGTTTGGTTCCCAGCACCCATATCAGATGGCCCACAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCTTGGTTTGGTTCCCAGCACCCATATCAGATGGCCCACAACTG  150

seq1  CCTCTAATTGTAATTCCAAAGGATCCAGCACCTCTGCAGATACTAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATTGTAATTCCAAAGGATCCAGCACCTCTGCAGATACTAGCACA  200

seq1  CACATGGTGCACATGTAGGCATGCACGAATACTCATAAATGAAACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGCACATGTAGGCATGCACGAATACTCATAAATGAAACAAAAA  250

seq1  TGAGAAAAAGTACATTTCTGTAAGTTCAAGGCTATCCTGGTCTACATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAAGTACATTTCTGTAAGTTCAAGGCTATCCTGGTCTACATAAC  300

seq1  CAGTTCCATGTCAGCCAGGGCTACATTGAGAAACCTTGCCTCAAGGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCATGTCAGCCAGGGCTACATTGAGAAACCTTGCCTCAAGGGGAA  350

seq1  AAAAAAAAGCAGACCTGAACTTAGGAAGTAGATATGTTGGTCCTGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGCAGACCTGAACTTAGGAAGTAGATATGTTGGTCCTGGTGGG  400

seq1  TGTGAGGGAGTGGGAAAGGGGGTTG  425
      |||||||||||||||||||||||||
seq2  TGTGAGGGAGTGGGAAAGGGGGTTG  425

seq1: chr2_93997612_93998708
seq2: B6Ng01-252B11.g_68_1162 (reverse)

seq1  AAATA--AACACTGCAAGGGACACAGCGGACAATGCGCCTGACTCCGGCC  48
      |||||  |||||||| | |||||||||||||||||  |||||   ||| |
seq2  AAATAATAACACTGCCA-GGACACAGCGGACAATGGCCCTGA--TCGGTC  47

seq1  GCCTGCCCAGGAGGGCTCCAACAGGACAAGTCCGGG-GAGTTAAGAAAGG  97
      | ||| |||||||||||||| || ||| |||||||| ||||| |||||||
seq2  G-CTG-CCAGGAGGGCTCCACCAAGAC-AGTCCGGGAGAGTT-AGAAAGG  93

seq1  TCTCC-TCCGTGCCCACCAGGCAGCAGCAGGTCAGATCACCC--ACCCCG  144
      ||||| ||||||||||||||||||||||||||||||||||||   |||||
seq2  TCTCCTTCCGTGCCCACCAGGCAGCAGCAGGTCAGATCACCCCACCCCCG  143

seq1  CCAGTG-CGCTCAGGGTCTGGAGAAGTTTCCGCGCTCCAGAGCGGGCTCG  193
      |||||| ||||||| ||||||||||  || ||||||||||||| ||||||
seq2  CCAGTGACGCTCAGAGTCTGGAGAAAGTTTCGCGCTCCAGAGC-GGCTCG  192

seq1  CTGAGCGCGAGCGACAGGGGAACAAGGGCCACAGCGTGGTCGCGGCTTGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGCGAGCGACAGGGGAACAAGGGCCACAGCGTGGTCGCGGCTTGT  242

seq1  GGTTCCACTCACCTGCCCATTCTCCGAGTCGCGGACCGACCAAGGCCTCG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACTCACCTGCCCATTCTCCGAGTCGCGGACCGACCAAGGCCTCG  292

seq1  TTGCCCACGCACCACACCTGGAAGGCCCTGAAGAGCGAGTACGAGGCTCG  343
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGCCCACGCACCACACCTGGAAGG-CCTGAAGAGCGAGTACGAGGCTCG  341

seq1  CAGGGCCAGGTAGGCAATGGTGCTCGCGCCCACCCAGTACAGGAAGCCGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGGTAGGCAATGGTGCTCGCGCCCACCCAGTACAGGAAGCCGG  391

seq1  CCGCCGGGGGAGCGCACTCCATGGCTCGTGACTAGGCCTCACTACTACGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGGGGGAGCGCACTCCATGGCTCGTGACTAGGCCTCACTACTACGG  441

seq1  TGAATGGGGAAGGAAAAAAAAAAAAAGAATGAATGGGACGAGGAGGCGGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGAAGGAAAAAAAAAAAAAGAATGAATGGGACGAGGAGGCGGT  491

seq1  GCCGCCGTGACGGCGAAGACGCAGCGAATAGACGTGATTTTTTGAACGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGTGACGGCGAAGACGCAGCGAATAGACGTGATTTTTTGAACGCT  541

seq1  TTAGGTCTAAGACCCGCCTACATAGTCATATCCATGTGTCTATTGGTGAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTAAGACCCGCCTACATAGTCATATCCATGTGTCTATTGGTGAC  591

seq1  TTCTCTTTCCTGTAAGCGTACTATGTCTCCTATTGGTTAGCCTTCGTTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCCTGTAAGCGTACTATGTCTCCTATTGGTTAGCCTTCGTTTC  641

seq1  GTAGCCCCGCCCACAATCCCCTTCGGCGCGCTCAGAGCCGCATTTCCGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCCGCCCACAATCCCCTTCGGCGCGCTCAGAGCCGCATTTCCGTA  691

seq1  TTAAGACAGTGGCTCGCTCACAAGCCGCTCAACGTTTGGCTCCGCCCACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGTGGCTCGCTCACAAGCCGCTCAACGTTTGGCTCCGCCCACA  741

seq1  AGCTTTACCTCGCACCACCGAAGCGCAGGGATCTCTCATTGGCAGAGGCG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACCTCGCACCACCGAAGCGCAGGGATCTCTCATTGGCAGAGGCG  791

seq1  GCCCTTACGACTGCGGAAGGCTGCGCGCTGATTGGCCAGTGATACCTAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTACGACTGCGGAAGGCTGCGCGCTGATTGGCCAGTGATACCTAAC  841

seq1  TGGGTTTAGCTCACATTTCAGGAAGGAATGGAACCGGAAAGGGAAGAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAGCTCACATTTCAGGAAGGAATGGAACCGGAAAGGGAAGAATA  891

seq1  TAGTAGAAGTCCGGGAGGAGCTGGAGTAGTGCTTGTGATTACGTCTTAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAAGTCCGGGAGGAGCTGGAGTAGTGCTTGTGATTACGTCTTAGT  941

seq1  AATAACCGCTTTCGGATTGTTAATTCCTCAGACTTTTCAGATGAAGGTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCGCTTTCGGATTGTTAATTCCTCAGACTTTTCAGATGAAGGTTT  991

seq1  ACGGTTCCCCTTTGTCTGCAGAGCACGCTTTCGCTCCATTTTTTTGAATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCCCCTTTGTCTGCAGAGCACGCTTTCGCTCCATTTTTTTGAATG  1041

seq1  ACTGCCTTAGCTCCCACAATGAACTTTATACTTGTTCCCAATAATTCGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTAGCTCCCACAATGAACTTTATACTTGTTCCCAATAATTCGGA  1091

seq1  ATTC  1097
      ||||
seq2  ATTC  1095