BAC Information

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BAC

Clone NameB6Ng01-252K06
Chromosome2 (Build37)
Map Location 121,782,012 - 121,867,448
singlet/doubletdoublet
Overlap geneCtdspl2, Eif3s1
Upstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3
Downstream gene4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252K06.bB6Ng01-252K06.g
ACCGA059582GA059583
length1,1261,123
definitionB6Ng01-252K06.b B6Ng01-252K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,866,326 - 121,867,448)(121,782,012 - 121,783,114)
sequence
gaattctgtatgcattagaaggaaactgacggaacttaccctctttttaa
tttcttcttgccttttcttctgctgccgttctttctcttttatcttttct
gctatttttttcttctctgaaatttttacttctaaaagaaatattttatt
tacaatgatattgaatactttctagtttatgaccaagacagacatgatgc
ttgactacttgaagaaaccaaccctttcctaagtccccagagtcatatgg
tgatattctggaaaggaggaagagttcgggtacttttccttttcctttca
aatcatatcaccaaagatccaaatctctctcttcatacttcctttagaca
aggtaagttattcaaataacaccatttcctctactcttttttctcctcat
gagacccagcagtcaaacagaaaaccagcaggtctataatctgattgttg
agaagccagaggaagagcaggaaaaagaaagagaataaacaacgtggctt
acctggtttgacttctgcttcctctttattttcatcatcatcatcatccc
agttatcctgaaggcacaagaccctccattagtgattcttacacgctctc
ttttccatgtgagctatagggttaacctaattctacagaaacaagtttgt
tggtatttttggtgttacaaacttttataacagtagtcagacccttagcc
aaggtttatctttccatttccagtctacttctctatctcagcagtgtaag
aagctccacatgtttctctttgggtttgttcctagtattctgcaaattcc
aatgttgttgttcccttgccctataactagttatttgtatatagcaacgt
ctactaggctttaaaaattagtatttaggaagaaggcagagtccagcatg
gcccaggctctccttgaactccagatctttctgcctccaccttctcaatt
ggtaggatttcagccaccaaaacccagtcttctgaacagtaatttttaac
atttaagttagatttattcaatttcgttaacattttctatccaaaatgca
aaacattcttaggtacacatgttgctacaaagaaatattccatttctaca
cagttgcctagtgcacaaggccctga

ctctggtgagttccctaaggcggcagaaacttcagcctcttcacggtagt
aaaagttggtttcccctcccccgctgccgcccaggcctcccgcattcctt
ccctcccgcctctccggatcggggcgggcgggggaggagggagccagagc
gcctgcgcagggaggccgctttccatccgggtccctgtccgtgcggtgca
gcaggtcggtaggcgggaaatggcgactggctgaaggagctggttctgtt
gctgctgagggataagcgggaaagacaccacctattgcgcagtcgggacc
atcgccggagcccgaagacacttttctgtcgtcacagtgaaggtaattcc
cttggtccagacgctgccgttgctccgaagctcagtcctctctcagggcc
gtctgccgggatctcctccccttctctagccgagccctcagcggttccag
caacgtccgtaggcatgcactgttggcgccttgtacgtccactgtcgtgg
aagctgctctggcttggactttccccagggaacggccagggagctcactt
cccgccagcttcagctcttaggctgcggcctgtgttgtgatttctggggt
tagatttcactttgctacccacccccaaccccatctcacgttcccagtct
ctgaccccgtggacccgatagctaattaagttagattgccttttcgaacc
ttcttgtgggcccacgtaatgtttttggtatttcattcttgtagggtgca
ttaggggggcgttgctctctctacttgagctcttacagacatcctttgag
aatctggaaagaggttcttggagctttctgtcgttttctgtactgctaaa
atgttgagttgacattactactttttaaagtcaagtgtggttagtaaaaa
ccagcgtgttgttaggaggcctctgatttccgtagtggttagttcaaggg
tgatcttaattctattttagcatgttggtttacgttgggttaagttcgga
attgagtttaccttggcgttctggaccaggaattctggtgattaaatatt
cgcataattaataagtgttttattttactttctctcgccctgcggtacgc
tggatggtcgtgaatgaccgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121866326_121867448
seq2: B6Ng01-252K06.b_44_1169 (reverse)

seq1  TCAGG--CTTGTGGCACTAGGCCAACTGTTGTAGGAATGGAATATT--CT  46
      |||||  ||||| |||||||| |||||| ||||| |||||||||||   |
seq2  TCAGGGCCTTGT-GCACTAGG-CAACTG-TGTAGAAATGGAATATTTCTT  47

seq1  TGTAGCAACATGTTGGTACTTAAGAATGTTTTGCATTTTGGATTAGAAAA  96
      |||||||||||||  |||| |||||||||||||||||||||| |||||||
seq2  TGTAGCAACATGT--GTACCTAAGAATGTTTTGCATTTTGGA-TAGAAAA  94

seq1  TGTTAACG-AATTG-ATAAATCTAACTTAAATGTT-AAAATTACTGTTCA  143
      |||||||| ||||| |||||||||||||||||||| ||||||||||||||
seq2  TGTTAACGAAATTGAATAAATCTAACTTAAATGTTAAAAATTACTGTTCA  144

seq1  G-AGACTGGG-TTTGGTGGCCTGAAATCCTACCAATTGAGAA-GTGGAGG  190
      | |||||||| |||||||| |||||||||||||||||||||| |||||||
seq2  GAAGACTGGGTTTTGGTGG-CTGAAATCCTACCAATTGAGAAGGTGGAGG  193

seq1  CAGAAAGATCTGGAGTTCAAGGAGAGCCTGGGCCATGCTGGACTCTGCCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATCTGGAGTTCAAGGAGAGCCTGGGCCATGCTGGACTCTGCCT  243

seq1  TCTTCCTAAATACTAATTTTTAAAGCCTAGTAGACGTTGCTATATACAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAAATACTAATTTTTAAAGCCTAGTAGACGTTGCTATATACAAA  293

seq1  TAACTAGTTATAGGGCAAGGGAACAACAACATTGGAATTTGCAGAATACT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTTATAGGGCAAGGGAACAACAACATTGGAATTTGCAGAATACT  343

seq1  AGGAACAAACCCAAAGAGAAACATGTGGAGCTTCTTACACTGCTGAGATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAACCCAAAGAGAAACATGTGGAGCTTCTTACACTGCTGAGATA  393

seq1  GAGAAGTAGACTGGAAATGGAAAGATAAACCTTGGCTAAGGGTCTGACTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGACTGGAAATGGAAAGATAAACCTTGGCTAAGGGTCTGACTA  443

seq1  CTGTTATAAAAGTTTGTAACACCAAAAATACCAACAAACTTGTTTCTGTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATAAAAGTTTGTAACACCAAAAATACCAACAAACTTGTTTCTGTA  493

seq1  GAATTAGGTTAACCCTATAGCTCACATGGAAAAGAGAGCGTGTAAGAATC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGGTTAACCCTATAGCTCACATGGAAAAGAGAGCGTGTAAGAATC  543

seq1  ACTAATGGAGGGTCTTGTGCCTTCAGGATAACTGGGATGATGATGATGAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGAGGGTCTTGTGCCTTCAGGATAACTGGGATGATGATGATGAT  593

seq1  GAAAATAAAGAGGAAGCAGAAGTCAAACCAGGTAAGCCACGTTGTTTATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGAGGAAGCAGAAGTCAAACCAGGTAAGCCACGTTGTTTATT  643

seq1  CTCTTTCTTTTTCCTGCTCTTCCTCTGGCTTCTCAACAATCAGATTATAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTTTCCTGCTCTTCCTCTGGCTTCTCAACAATCAGATTATAG  693

seq1  ACCTGCTGGTTTTCTGTTTGACTGCTGGGTCTCATGAGGAGAAAAAAGAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGTTTTCTGTTTGACTGCTGGGTCTCATGAGGAGAAAAAAGAG  743

seq1  TAGAGGAAATGGTGTTATTTGAATAACTTACCTTGTCTAAAGGAAGTATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAATGGTGTTATTTGAATAACTTACCTTGTCTAAAGGAAGTATG  793

seq1  AAGAGAGAGATTTGGATCTTTGGTGATATGATTTGAAAGGAAAAGGAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGATTTGGATCTTTGGTGATATGATTTGAAAGGAAAAGGAAAA  843

seq1  GTACCCGAACTCTTCCTCCTTTCCAGAATATCACCATATGACTCTGGGGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCGAACTCTTCCTCCTTTCCAGAATATCACCATATGACTCTGGGGA  893

seq1  CTTAGGAAAGGGTTGGTTTCTTCAAGTAGTCAAGCATCATGTCTGTCTTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAAAGGGTTGGTTTCTTCAAGTAGTCAAGCATCATGTCTGTCTTG  943

seq1  GTCATAAACTAGAAAGTATTCAATATCATTGTAAATAAAATATTTCTTTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAACTAGAAAGTATTCAATATCATTGTAAATAAAATATTTCTTTT  993

seq1  AGAAGTAAAAATTTCAGAGAAGAAAAAAATAGCAGAAAAGATAAAAGAGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAAATTTCAGAGAAGAAAAAAATAGCAGAAAAGATAAAAGAGA  1043

seq1  AAGAACGGCAGCAGAAGAAAAGGCAAGAAGAAATTAAAAAGAGGGTAAGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGGCAGCAGAAGAAAAGGCAAGAAGAAATTAAAAAGAGGGTAAGT  1093

seq1  TCCGTCAGTTTCCTTCTAATGCATACAGAATTC  1123
      |||||||||||||||||||||||||||||||||
seq2  TCCGTCAGTTTCCTTCTAATGCATACAGAATTC  1126


seq1: chr2_121782012_121783114
seq2: B6Ng01-252K06.g_76_1198

seq1  CTCTGGTGAGTTCCCTAAGGCGGCAGAAACTTCAGCCTCTTCACGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGAGTTCCCTAAGGCGGCAGAAACTTCAGCCTCTTCACGGTAGT  50

seq1  AAAAGTTGGTTTCCCCTCCCCCGCTGCCGCCCAGGCCTCCCGCATTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGGTTTCCCCTCCCCCGCTGCCGCCCAGGCCTCCCGCATTCCTT  100

seq1  CCCTCCCGCCTCTCCGGATCGGGGCGGGCGGGGGAGGAGGGAGCCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCGCCTCTCCGGATCGGGGCGGGCGGGGGAGGAGGGAGCCAGAGC  150

seq1  GCCTGCGCAGGGAGGCCGCTTTCCATCCGGGTCCCTGTCCGTGCGGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGCAGGGAGGCCGCTTTCCATCCGGGTCCCTGTCCGTGCGGTGCA  200

seq1  GCAGGTCGGTAGGCGGGAAATGGCGACTGGCTGAAGGAGCTGGTTCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCGGTAGGCGGGAAATGGCGACTGGCTGAAGGAGCTGGTTCTGTT  250

seq1  GCTGCTGAGGGATAAGCGGGAAAGACACCACCTATTGCGCAGTCGGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGGGATAAGCGGGAAAGACACCACCTATTGCGCAGTCGGGACC  300

seq1  ATCGCCGGAGCCCGAAGACACTTTTCTGTCGTCACAGTGAAGGTAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCGGAGCCCGAAGACACTTTTCTGTCGTCACAGTGAAGGTAATTCC  350

seq1  CTTGGTCCAGACGCTGCCGTTGCTCCGAAGCTCAGTCCTCTCTCAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCAGACGCTGCCGTTGCTCCGAAGCTCAGTCCTCTCTCAGGGCC  400

seq1  GTCTGCCGGGATCTCCTCCCCTTCTCTAGCCGAGCCCTCAGCGGTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCGGGATCTCCTCCCCTTCTCTAGCCGAGCCCTCAGCGGTTCCAG  450

seq1  CAACGTCCGTAGGCATGCACTGTTGGCGCCTTGTACGTCCACTGTCGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTCCGTAGGCATGCACTGTTGGCGCCTTGTACGTCCACTGTCGTGG  500

seq1  AAGCTGCTCTGGCTTGGACTTTCCCCAGGGAACGGCCAGGGAGCTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCTGGCTTGGACTTTCCCCAGGGAACGGCCAGGGAGCTCACTT  550

seq1  CCCGCCAGCTTCAGCTCTTAGGCTGCGGCCTGTGTTGTGATTTCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCAGCTTCAGCTCTTAGGCTGCGGCCTGTGTTGTGATTTCTGGGGT  600

seq1  TAGATTTCACTTTGCTACCCACCCCCAACCCCATCTCACGTTCCCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCACTTTGCTACCCACCCCCAACCCCATCTCACGTTCCCAGTCT  650

seq1  CTGACCCCGTGGACCCGATAGCTAATTAAGTTAGATTGCCTTTTCGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCGTGGACCCGATAGCTAATTAAGTTAGATTGCCTTTTCGAACC  700

seq1  TTCTTGTGGGCCCACGTAATGTTTTTGGTATTTCATTCTTGTAGGGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGGCCCACGTAATGTTTTTGGTATTTCATTCTTGTAGGGTGCA  750

seq1  TTAGGGGGGCGTTGCTCTCTCTACTTGAGCTCTTACAGACATCCTTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGGGCGTTGCTCTCTCTACTTGAGCTCTTACAGACATCCTTTGAG  800

seq1  AATCTGGAAAGAGGTTCTTGGAGC-TTCTGTCGTTTTCTGTACTGCTAAA  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATCTGGAAAGAGGTTCTTGGAGCTTTCTGTCGTTTTCTGTACTGCTAAA  850

seq1  ATGTTGAGTTGACATTACTACTTTTTAAAGTCAAGTGTGG-TAGTAAAAA  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGTTGAGTTGACATTACTACTTTTTAAAGTCAAGTGTGGTTAGTAAAAA  900

seq1  CCAGCGTGT--GTAGGAGGCCTCTGATTTCCGTAGTGGTTAGTT-AAGGG  945
      |||||||||   |||||||||||||||||||||||||||||||| |||||
seq2  CCAGCGTGTTGTTAGGAGGCCTCTGATTTCCGTAGTGGTTAGTTCAAGGG  950

seq1  TGAATCTTAATTCTA-TTTAGCATGTT-GTTTACGTTGGG-TAAGTCCGT  992
      || |||||||||||| ||||||||||| |||||||||||| ||||| || 
seq2  TG-ATCTTAATTCTATTTTAGCATGTTGGTTTACGTTGGGTTAAGTTCGG  999

seq1  A--TGAGTTTACCTTTGCGTTCTTGACCAGG-ATTCT-GTGA-TAAATAA  1037
      |  |||||||||||| ||||||| ||||||| ||||| |||| |||||| 
seq2  AATTGAGTTTACCTTGGCGTTCTGGACCAGGAATTCTGGTGATTAAATAT  1049

seq1  TTGCATAAATAAATAGTGTTT--ATTTACT---TCTCGCCCTAGTGGTA-  1081
      | |||||| |||  |||||||   ||||||   ||||||||| | |||| 
seq2  TCGCATAATTAATAAGTGTTTTATTTTACTTTCTCTCGCCCT-GCGGTAC  1098

seq1  GCTGGATG--TGTGAATGA-CGTTA  1103
      ||||||||   |||||||| |||||
seq2  GCTGGATGGTCGTGAATGACCGTTA  1123


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