BAC Information

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BAC

Clone NameB6Ng01-252O24
Chromosome2 (Build37)
Map Location 145,053,299 - 145,206,132
singlet/doubletdoublet
Overlap geneSlc24a3
Upstream geneSnx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252O24.bB6Ng01-252O24.g
ACCGA059802GA059803
length1,0921,063
definitionB6Ng01-252O24.b B6Ng01-252O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,205,056 - 145,206,132)(145,053,299 - 145,054,356)
sequence
gaattctgcttctactctgtttcaactcaaggagttttcttctttctgga
cagaagaatgcttcaggtggccatcaagtcagtacatgtgagcaaggaca
ttggctccatgacagtcatggagaaaaggggcagaggttatgagaactga
ccatggcaattggtcacattacataatacactaggtcagatgttataagg
caataaaacaaacatgggattattgacaaggtcagttctggctaatggta
acacagagtatgttaaaccatctttgtgctttttggtaattaaaaaaaaa
atctcaggaatggtgagatggctcagagagcaaacacacttgccagtaag
cccagtggcctgagttaaatcctcaggacccacagcatggaaagagaaaa
cagattcctacaagtcatctactcacctccacttgtgtgccttgtcatgt
gcccaccccaataaatgaatacaatataaatctaaacaatgaaccgtatt
gctaatgaaataaagaatatggatacatacacacacacacacacacatat
acatacacacacacacacacatacacacacatacacacacacacatacat
acacacacacacacacacacacacacacacacacactctcacacacacac
acacacatatgcatagtaaacttgctaagataagtttctagcttggaaac
taaaatcattaaattccaggtaagaatggaaagaaattttaagagagaag
aaatcaataaaattgaaaatataaaaatatttcaataaaacccagagccc
tatgaaaagatcaatacaatttgtagttctatctagtttaaaatacaaaa
tattgaacaacacaaataattggaattaaaaaactgaaaatagagctata
ccatcattaacatagtaatgaaagaattagtatcacaatcctatgcccca
taaagttgaagccacacagatgaaataaaaccctaaagttataatctacc
caaaaaacttcaattcaagaggtaaataaatatggaatagggtttataat
cactggaagaaaccaaattcaataaccaggtattctaaaaga
gaattcagattcccattgaaatgatgcgatatgcctcatttcattctgaa
accctttctagctggggtatccctgagacacagaagctggcttggcccat
tcaaaataccggctggtttttggggagtttgtgtttttaggggaaactct
ctaaactggtgaaactgtagcaacacagcactcatccttcagatggacaa
ttttggaaggctttctgaacacatcaccgaatgtccagtgggcttgggcc
ttgataggagtaagggcctccatggtgtatcatagtacattctccatacc
ccaccctgtcttgccttccagtctcccttagtctcctctccttcccctcc
aaatataaagttcccagaaacagtgcgctatgggaatttataatgtgatc
tgggatctcttacatccaggtctttgtcttcctaatgttggcttttgggg
accccaaaccaggacacttccctctgttgacagcactaaattgctatcag
aagcactcctgccctaacacgatggtatttggggcctttcaccatttcaa
tgtgcaggcccctacctgtcagctgccagggctggctgaatatttgggga
tctgtgcttagaccaagaggatccactttcaggggccctgcttcaccacc
tgtcacctggaattgatctctttatgccatgtggccatcttaatctccac
agtagcccagtgcttttgcagatctgctcctttgttttatagatggcatc
tgaaaggctcactatgatagcatggcaaggcaaactggtttggatgagag
cagtactggctgcttcttttagatttcatcagattttacatgaggtggga
ttttaggaaaaatgagttcataggtcgggtgggaatctttccactgctct
cagaaaggactagaccacctcagactgcagacagaaatcattgcatcatg
tgactgaaaagctcacgatcatcttggattcatctgtcaaagtcaacata
tgaatgtcatctgggccttggcctgcttggctctggagttgtctctctgg
tcacctttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145205056_145206132
seq2: B6Ng01-252O24.b_47_1138 (reverse)

seq1  TCTTTTAGAATA-CTGGTTATTG-ATTTGGTTTCTT-CAGTGA-TATAAA  46
      |||||||||||| |||||||||| |||||||||||| |||||| ||||||
seq2  TCTTTTAGAATACCTGGTTATTGAATTTGGTTTCTTCCAGTGATTATAAA  50

seq1  -CCTA-TCCATA-TTATTTACCTCTTG-ATTG-AGTTTTT--GGTAGATT  89
       |||| |||||| |||||||||||||| |||| |||||||  ||||||||
seq2  CCCTATTCCATATTTATTTACCTCTTGAATTGAAGTTTTTTGGGTAGATT  100

seq1  ATAACTTTTAGG-TTTATTTCATCTGTGTG--CTCAACTTTAT-GGGCAT  135
      ||||||||  || |||||||||||||||||   |||||||||| ||||||
seq2  ATAACTTTAGGGTTTTATTTCATCTGTGTGGCTTCAACTTTATGGGGCAT  150

seq1  AGGATTGTGATACT-ATTCTTTCATTACTATGTTAATGATGGTATAGCTC  184
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGATTGTGATACTAATTCTTTCATTACTATGTTAATGATGGTATAGCTC  200

seq1  TATTTTCAG-TTTTTAATTCCAATTATTTGTGTTGTTCAATATTTTGTAT  233
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGTTTTTTAATTCCAATTATTTGTGTTGTTCAATATTTTGTAT  250

seq1  TTTAAACTAGATAGAACTACAAATTGTATTGATCTTTTCATAGGGCTCTG  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTAGATAGAACTACAAATTGTATTGATCTTTTCATAGGGCTCTG  300

seq1  GGTTTTATTGAAATATTTTTATATTTTCAATTTTATTGATTTCTTCTCTC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTGAAATATTTTTATATTTTCAATTTTATTGATTTCTTCTCTC  350

seq1  TTAAAATTTCTTTCCATTCTTACCTGGAATTTAATGATTTTAGTTTCCAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTCTTTCCATTCTTACCTGGAATTTAATGATTTTAGTTTCCAA  400

seq1  GCTAGAAACTTATCTTAGCAAGTTTACTATGCATATGTGTGTGTGTGTGT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAACTTATCTTAGCAAGTTTACTATGCATATGTGTGTGTGTGTGT  450

seq1  GTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGT  500

seq1  GTGTGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTATGTATATGTGT  533
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  GTGTGTGTGTATGTGTGTGTATGTGTGTGTGTGTGTGTATGTATA--TGT  548

seq1  GTGTGTGTGTGTGTGTATGTATCCATATTCTTTATTTCATTAGCAATACG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTATGTATCCATATTCTTTATTTCATTAGCAATACG  598

seq1  GTTCATTGTTTAGATTTATATTGTATTCATTTATTGGGGTGGGCACATGA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGTTTAGATTTATATTGTATTCATTTATTGGGGTGGGCACATGA  648

seq1  CAAGGCACACAAGTGGAGGTGAGTAGATGACTTGTAGGAATCTGTTTTCT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACACAAGTGGAGGTGAGTAGATGACTTGTAGGAATCTGTTTTCT  698

seq1  CTTTCCATGCTGTGGGTCCTGAGGATTTAACTCAGGCCACTGGGCTTACT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGCTGTGGGTCCTGAGGATTTAACTCAGGCCACTGGGCTTACT  748

seq1  GGCAAGTGTGTTTGCTCTCTGAGCCATCTCACCATTCCTGAGATTTTTTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGTGTTTGCTCTCTGAGCCATCTCACCATTCCTGAGATTTTTTT  798

seq1  TTTAATTACCAAAAAGCACAAAGATGGTTTAACATACTCTGTGTTACCAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACCAAAAAGCACAAAGATGGTTTAACATACTCTGTGTTACCAT  848

seq1  TAGCCAGAACTGACCTTGTCAATAATCCCATGTTTGTTTTATTGCCTTAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAACTGACCTTGTCAATAATCCCATGTTTGTTTTATTGCCTTAT  898

seq1  AACATCTGACCTAGTGTATTATGTAATGTGACCAATTGCCATGGTCAGTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGACCTAGTGTATTATGTAATGTGACCAATTGCCATGGTCAGTT  948

seq1  CTCATAACCTCTGCCCCTTTTCTCCATGACTGTCATGGAGCCAATGTCCT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAACCTCTGCCCCTTTTCTCCATGACTGTCATGGAGCCAATGTCCT  998

seq1  TGCTCACATGTACTGACTTGATGGCCACCTGAAGCATTCTTCTGTCCAGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATGTACTGACTTGATGGCCACCTGAAGCATTCTTCTGTCCAGA  1048

seq1  AAGAAGAAAACTCCTTGAGTTGAAACAGAGTAGAAGCAGAATTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAACTCCTTGAGTTGAAACAGAGTAGAAGCAGAATTC  1092

seq1: chr2_145053299_145054356
seq2: B6Ng01-252O24.g_66_1128

seq1  GAATTCAGATTCCCATTGAAATGATGCGATATGCCTCATTTCATTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCCCATTGAAATGATGCGATATGCCTCATTTCATTCTGAA  50

seq1  ACCCTTTCTAGCTGGGGTATCCCTGAGACACAGAAGCTGGCTTGGCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCTAGCTGGGGTATCCCTGAGACACAGAAGCTGGCTTGGCCCAT  100

seq1  TCAAAATACCGGCTGGTTTTTGGGGAGTTTGTGTTTTTAGGGGAAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACCGGCTGGTTTTTGGGGAGTTTGTGTTTTTAGGGGAAACTCT  150

seq1  CTAAACTGGTGAAACTGTAGCAACACAGCACTCATCCTTCAGATGGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGGTGAAACTGTAGCAACACAGCACTCATCCTTCAGATGGACAA  200

seq1  TTTTGGAAGGCTTTCTGAACACATCACCGAATGTCCAGTGGGCTTGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGGCTTTCTGAACACATCACCGAATGTCCAGTGGGCTTGGGCC  250

seq1  TTGATAGGAGTAAGGGCCTCCATGGTGTATCATAGTACATTCTCCATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGAGTAAGGGCCTCCATGGTGTATCATAGTACATTCTCCATACC  300

seq1  CCACCCTGTCTTGCCTTCCAGTCTCCCTTAGTCTCCTCTCCTTCCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGTCTTGCCTTCCAGTCTCCCTTAGTCTCCTCTCCTTCCCCTCC  350

seq1  AAATATAAAGTTCCCAGAAACAGTGCGCTATGGGAATTTATAATGTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGTTCCCAGAAACAGTGCGCTATGGGAATTTATAATGTGATC  400

seq1  TGGGATCTCTTACATCCAGGTCTTTGTCTTCCTAATGTTGGCTTTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTCTTACATCCAGGTCTTTGTCTTCCTAATGTTGGCTTTTGGGG  450

seq1  ACCCCAAACCAGGACACTTCCCTCTGTTGACAGCACTAAATTGCTATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCAGGACACTTCCCTCTGTTGACAGCACTAAATTGCTATCAG  500

seq1  AAGCACTCCTGCCCTAACACGATGGTATTTGGGGCCTTTCACCATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCCTGCCCTAACACGATGGTATTTGGGGCCTTTCACCATTTCAA  550

seq1  TGTGCAGGCCCCTACCTGTCAGCTGCCAGGGCTGGCTGAATATTTGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGCCCCTACCTGTCAGCTGCCAGGGCTGGCTGAATATTTGGGGA  600

seq1  TCTGTGCTTAGACCAAGAGGATCCACTTTCAGGGGCCCTGCTTCACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTAGACCAAGAGGATCCACTTTCAGGGGCCCTGCTTCACCACC  650

seq1  TGTCACCTGGAATTGATCTCTTTATGCCATGTGGCCATCTTAATCTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTGGAATTGATCTCTTTATGCCATGTGGCCATCTTAATCTCCAC  700

seq1  AGTAGCCCAGTGCTTTTGCAGATCTGCTCCTTTGTTTTATAGATGGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCCAGTGCTTTTGCAGATCTGCTCCTTTGTTTTATAGATGGCATC  750

seq1  TGAAAGGCTCACTATGATAGCATGGCAAGGCAAACTGGTTTGGATGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCTCACTATGATAGCATGGCAAGGCAAACTGGTTTGGATGAGAG  800

seq1  CAGTACTGGCTGCTTCTTTTAGATTTCATCAGATTTTACATGAGGTGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGGCTGCTTCTTTTAGATTTCATCAGATTTTACATGAGGTGGGA  850

seq1  TTTTAGGAAAAATGAG-TCATAGGTCGGGTGGGAATCTTTCCACTGCTCT  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAAAATGAGTTCATAGGTCGGGTGGGAATCTTTCCACTGCTCT  900

seq1  CAGAAA-GACTAGACCACCTCAGACTGCAGACAGAAATCATTGCATCATG  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGACTAGACCACCTCAGACTGCAGACAGAAATCATTGCATCATG  950

seq1  TGACTGAAAAGCTCACGATCATCTTGGATTCATCTGTCAAAGTCAACATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAAAGCTCACGATCATCTTGGATTCATCTGTCAAAGTCAACATA  1000

seq1  TG-ATGTCATCTGGGCCTTGG-CTGCTTGCCTCTTGATGTTG--TCTCTG  1044
      || |||||||||||||||||| ||||||| |||| || ||||  ||||||
seq2  TGAATGTCATCTGGGCCTTGGCCTGCTTGGCTCTGGA-GTTGTCTCTCTG  1049

seq1  GTCACCTTTGTGTG  1058
      ||||||||||||||
seq2  GTCACCTTTGTGTG  1063