BAC Information

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BAC

Clone NameB6Ng01-253H06
Chromosome2 (Build37)
Map Location 100,300,051 - 100,430,828
singlet/doubletdoublet
Overlap geneLOC241572
Upstream geneLOC621386, LOC668702, LOC100042907
Downstream geneLOC668705, B230118H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253H06.bB6Ng01-253H06.g
ACCGA060178GA060179
length1,1351,139
definitionB6Ng01-253H06.b B6Ng01-253H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,429,690 - 100,430,828)(100,300,051 - 100,301,168)
sequence
gaattccaagctcagggtctgcttcaagaattttctaggaatccttggaa
cacttataataaaacaatactgaaacagagcacatggatccaaacaccaa
acaggttttgagtattcgggctatgggaatgtcaaggttccaggaggctg
tttctatgcaactctgcctcctgtctgcttccaggctattaggcctacca
agcagactgcactggagtggatgtagcataatgagttgaactgcatgtcc
tcatcgaatagatcaaagtacaatgatgactttgaaacattaactgtttc
atagacatgctttgtttgggaaaaagatgtaggagctagccagaaatagg
aacacctgtttttctgcgttctcttttcaactcttttgagttggaatctt
gaaataagtcacagtaattaagttcacgggagctggtgaacattgggcaa
aaaattcacaggtgtggcaaacctctgagccaacctcttccagggatgag
gtaccagcaggaacacctgggtgtgcatagaagccaattgtctgccaaaa
tcagggctatgaaatgagaggaagaaggggtagcatggcaaaccataggc
acttctgaaaactgaaagggggaaatcaagaaagaagaatccaactctgg
agctacaggttggagcaaatgtgcttaaaaggtacaagcttattattatt
ttcttttttacagattcatgcatgtgtatttatttatatatttccattca
aaacagctggcctagcttacatacattctcataatcacattgttacacac
acacacacattcatacttacatgtacatttggagcaaatgtccaagcatc
agtgcagaaagaacccactcattctggatgaaaaatgaactacaatcttt
attgtgtagagaaagaaaaagcttctactcttttattgctaaatgaatta
aacccaagagaaagctttgctgtctatagtaagtctaagcctgccttctt
attaagaaaaacctgttatgtcccatagtaggagggatatgctcatagac
ttctatttcgattttgattgaatttattgtgtaaactgtgttgacttttt
acctattgtgtcatgtatcctgaaagaatgtataa
gaattctctggacaactttctataggagcaaagtacagagctgctgctgc
ccttctgtgataaagtcagagggtttccagtcctgcattcctccttcatc
cctggctcaagtagggccatgaaaaatagctaggctctattacatgtttt
agaggcattaattttccctagtgtcccagcccaccagcgccacactatgg
cccagagtgagcactacatgcgttgctggcctaataaaaaggataagaga
ggggaagggacaggggctagaagaggggccccagagggccattaaggtac
aggcacgacacgcatggtgttggtgaatccagagccagggcgccactcgg
tcagcacaatgaccacatctcccttcttgaagaagcctcgggccttgcca
acatccatggccaaggttacacgatggtcaacatcctcagcccaggcatt
cagtatggcatccttacacagcacagggaagatgccacggtacagatggg
cctggcaagcagtctgggaattgcacatcacagcaatgataggagcccga
gggcagtacctggccatgacttggtgagcacgataatggccctactgcag
gattgaaggaggcctccacggtacccacagtggcagcttctgtggggtcg
ctggtaatgttgccaggcggcggagttcctcaaatagctgtaagtggtag
atgacagcctctgcctctcgggcaatcaggtgctgcatgtgaacaccctc
cggagggtagtcccccttggaagtttctctggacagcacgatgccgtctg
ctccatccaggactgcatttggctacatcactgccttcagcatgagtggg
gcatgggattcttgactatgcttttccagcatctgtgtggcacactttga
caagcttcccagcttggttgcatctttcgtttcatcgtcttctggagcca
gggaagaaccttctctgcaagaattctcattgccaggtcacccacgagcc
aaccattcatccatcactggcctccaaaggattcttccatcaaacctgcg
gaacaccttcatgggttcctcaattcttgcctgatgaatattgatgttcc
ttgccttctctcccaaggacttctgaacctcatgcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100429690_100430828
seq2: B6Ng01-253H06.b_44_1178 (reverse)

seq1  TTATACA-TCTTTCAGGATACATGACCACATA-GTAAAAAGTTCACCACA  48
      ||||||| ||||||||||||||||||   ||| |||||||| ||| ||| 
seq2  TTATACATTCTTTCAGGATACATGACACAATAGGTAAAAAG-TCAACAC-  48

seq1  AGTTTACAC-ATAAATTCAAATCAAAAATCGAAATAGAAGTCTATGAGCA  97
      ||||||||| |||||||| |||| ||||||||||||||||||||||||||
seq2  AGTTTACACAATAAATTC-AATC-AAAATCGAAATAGAAGTCTATGAGCA  96

seq1  TATCCCTCCTTACTATGGGACATAACAGGTTTTTTCTTAATAAGAAGGCA  147
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  TATCCCTCC-TACTATGGGACATAACAGG-TTTTTCTTAATAAGAAGGCA  144

seq1  GGCTTAGACTTACTATAGACAGCAAAGCTTTCTTCTTGGGTTTAATTCAT  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCTTAGACTTACTATAGACAGCAAAGCTTTC-TCTTGGGTTTAATTCAT  193

seq1  TTAGCAATAAAAGAGTAGAAGCTTTTTCTTTCTCTACACAATAAAGATTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATAAAAGAGTAGAAGCTTTTTCTTTCTCTACACAATAAAGATTG  243

seq1  TAGTTCATTTTTCATCCAGAATGAGTGGGTTCTTTCTGCACTGATGCTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATTTTTCATCCAGAATGAGTGGGTTCTTTCTGCACTGATGCTTG  293

seq1  GACATTTGCTCCAAATGTACATGTAAGTATGAATGTGTGTGTGTGTGTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGCTCCAAATGTACATGTAAGTATGAATGTGTGTGTGTGTGTAA  343

seq1  CAATGTGATTATGAGAATGTATGTAAGCTAGGCCAGCTGTTTTGAATGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATTATGAGAATGTATGTAAGCTAGGCCAGCTGTTTTGAATGGA  393

seq1  AATATATAAATAAATACACATGCATGAATCTGTAAAAAAGAAAATAATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAATAAATACACATGCATGAATCTGTAAAAAAGAAAATAATAA  443

seq1  TAAGCTTGTACCTTTTAAGCACATTTGCTCCAACCTGTAGCTCCAGAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTGTACCTTTTAAGCACATTTGCTCCAACCTGTAGCTCCAGAGTT  493

seq1  GGATTCTTCTTTCTTGATTTCCCCCTTTCAGTTTTCAGAAGTGCCTATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTCTTTCTTGATTTCCCCCTTTCAGTTTTCAGAAGTGCCTATGG  543

seq1  TTTGCCATGCTACCCCTTCTTCCTCTCATTTCATAGCCCTGATTTTGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGCTACCCCTTCTTCCTCTCATTTCATAGCCCTGATTTTGGCA  593

seq1  GACAATTGGCTTCTATGCACACCCAGGTGTTCCTGCTGGTACCTCATCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGGCTTCTATGCACACCCAGGTGTTCCTGCTGGTACCTCATCCC  643

seq1  TGGAAGAGGTTGGCTCAGAGGTTTGCCACACCTGTGAATTTTTTGCCCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGGTTGGCTCAGAGGTTTGCCACACCTGTGAATTTTTTGCCCAA  693

seq1  TGTTCACCAGCTCCCGTGAACTTAATTACTGTGACTTATTTCAAGATTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCAGCTCCCGTGAACTTAATTACTGTGACTTATTTCAAGATTCC  743

seq1  AACTCAAAAGAGTTGAAAAGAGAACGCAGAAAAACAGGTGTTCCTATTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAAGAGTTGAAAAGAGAACGCAGAAAAACAGGTGTTCCTATTTC  793

seq1  TGGCTAGCTCCTACATCTTTTTCCCAAACAAAGCATGTCTATGAAACAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTCCTACATCTTTTTCCCAAACAAAGCATGTCTATGAAACAGT  843

seq1  TAATGTTTCAAAGTCATCATTGTACTTTGATCTATTCGATGAGGACATGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTCAAAGTCATCATTGTACTTTGATCTATTCGATGAGGACATGC  893

seq1  AGTTCAACTCATTATGCTACATCCACTCCAGTGCAGTCTGCTTGGTAGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAACTCATTATGCTACATCCACTCCAGTGCAGTCTGCTTGGTAGGC  943

seq1  CTAATAGCCTGGAAGCAGACAGGAGGCAGAGTTGCATAGAAACAGCCTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGCCTGGAAGCAGACAGGAGGCAGAGTTGCATAGAAACAGCCTCC  993

seq1  TGGAACCTTGACATTCCCATAGCCCGAATACTCAAAACCTGTTTGGTGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTTGACATTCCCATAGCCCGAATACTCAAAACCTGTTTGGTGTT  1043

seq1  TGGATCCATGTGCTCTGTTTCAGTATTGTTTTATTATAAGTGTTCCAAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCATGTGCTCTGTTTCAGTATTGTTTTATTATAAGTGTTCCAAGG  1093

seq1  ATTCCTAGAAAATTCTTGAAGCAGACCCTGAGCTTGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGAAAATTCTTGAAGCAGACCCTGAGCTTGGAATTC  1135

seq1: chr2_100300051_100301168
seq2: B6Ng01-253H06.g_64_1202

seq1  GAATTCTCTGGACAACTTTCTATAGGAGCAAAGTACAGAGCTGCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGACAACTTTCTATAGGAGCAAAGTACAGAGCTGCTGCTGC  50

seq1  CCTTCTGTGATAAAGTCAGAGGGTTTCCAGTCCTGCATTCCTCCTTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTGATAAAGTCAGAGGGTTTCCAGTCCTGCATTCCTCCTTCATC  100

seq1  CCTGGCTCAAGTAGGGCCATGAAAAATAGCTAGGCTCTATTACATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCAAGTAGGGCCATGAAAAATAGCTAGGCTCTATTACATGTTTT  150

seq1  AGAGGCATTAATTTTCCCTAGTGTCCCAGCCCACCAGCGCCACACTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATTAATTTTCCCTAGTGTCCCAGCCCACCAGCGCCACACTATGG  200

seq1  CCCAGAGTGAGCACTACATGCGTTGCTGGCCTAATAAAAAGGATAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTGAGCACTACATGCGTTGCTGGCCTAATAAAAAGGATAAGAGA  250

seq1  GGGGAAGGGACAGGGGCTAGAAGAGGGGCCCCAGAGGGCCATTAAGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGACAGGGGCTAGAAGAGGGGCCCCAGAGGGCCATTAAGGTAC  300

seq1  AGGCACGACACGCATGGTGTTGGTGAATCCAGAGCCAGGGCGCCACTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGACACGCATGGTGTTGGTGAATCCAGAGCCAGGGCGCCACTCGG  350

seq1  TCAGCACAATGACCACATCTCCCTTCTTGAAGAAGCCTCGGGCCTTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACAATGACCACATCTCCCTTCTTGAAGAAGCCTCGGGCCTTGCCA  400

seq1  ACATCCATGGCCAAGGTTACACGATGGTCAACATCCTCAGCCCAGGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATGGCCAAGGTTACACGATGGTCAACATCCTCAGCCCAGGCATT  450

seq1  CAGTATGGCATCCTTACACAGCACAGGGAAGATGCCACGGTACAGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGGCATCCTTACACAGCACAGGGAAGATGCCACGGTACAGATGGG  500

seq1  CCTGGCAAGCAGTCTGGGAATTGCACATCACAGCAATGATAGGAGCCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAGCAGTCTGGGAATTGCACATCACAGCAATGATAGGAGCCCGA  550

seq1  GGGCAGTACCTGGCCATGACTTGGTGAGCACGATAATGGCCCTACTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTACCTGGCCATGACTTGGTGAGCACGATAATGGCCCTACTGCAG  600

seq1  GATTGAAGGAGGCCTCCACGGTACCCACAGTGGCAGCTTCTGTGGGGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGGAGGCCTCCACGGTACCCACAGTGGCAGCTTCTGTGGGGTCG  650

seq1  CTGGTAATGTTGCCAGGCGGCGGAGTTCCTCAAATAGCTGTAAGTGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATGTTGCCAGGCGGCGGAGTTCCTCAAATAGCTGTAAGTGGTAG  700

seq1  ATGACAGCCTCTGCCTCTCGGGCAATCAGGTGCTGCATGTGAACACCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCCTCTGCCTCTCGGGCAATCAGGTGCTGCATGTGAACACCCTC  750

seq1  CGGAGGGTAGTCCCCCTTGGAAGTTTCTCTGGACAGCACGATGCCGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGTAGTCCCCCTTGGAAGTTTCTCTGGACAGCACGATGCCGTCTG  800

seq1  CTCCATCCAGGACTGCA-TTGGCTACATCACTGCCTTCAGCATGAGTGGG  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCCATCCAGGACTGCATTTGGCTACATCACTGCCTTCAGCATGAGTGGG  850

seq1  GCAT-GGATTCTTGACTATGC-TTTCCAGCATCTGTGTGGCACAC-TTGA  896
      |||| |||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GCATGGGATTCTTGACTATGCTTTTCCAGCATCTGTGTGGCACACTTTGA  900

seq1  CAAGCTTCCCAGCTTGGTTGCATCTTCCG-TTCATCGTCTTCT-GAGCCA  944
      |||||||||||||||||||||||||| || ||||||||||||| ||||||
seq2  CAAGCTTCCCAGCTTGGTTGCATCTTTCGTTTCATCGTCTTCTGGAGCCA  950

seq1  -GGAAG-ACCTTCTCTGCAAGAA-TCTCAATGCCCAGGTCA-CCACGAGC  990
       ||||| |||||||||||||||| ||||| || |||||||| ||||||||
seq2  GGGAAGAACCTTCTCTGCAAGAATTCTCATTG-CCAGGTCACCCACGAGC  999

seq1  C-ACCA-TCATCCCATCACTGGCCTCCAA--GA-TCT--CATCAAACCTG  1033
      | |||| |||| |||||||||||||||||  || |||  |||||||||||
seq2  CAACCATTCAT-CCATCACTGGCCTCCAAAGGATTCTTCCATCAAACCTG  1048

seq1  CGG-ACACCTTCATGG--TTCTCAA-TCTTG-CTGATG-ATATTGATGTT  1077
      ||| ||||||||||||  | ||||| ||||| |||||| |||||||||||
seq2  CGGAACACCTTCATGGGTTCCTCAATTCTTGCCTGATGAATATTGATGTT  1098

seq1  CTTGCCCTTCTCTCCCAGGACCTTCCTGACTTCATGCACAC  1118
      | |  |||||||||||| |  ||||   || ||||||||||
seq2  CCTTGCCTTCTCTCCCAAGGACTTCTGAACCTCATGCACAC  1139