BAC Information

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BAC

Clone NameB6Ng01-253I08
Chromosome2 (Build37)
Map Location 171,765,749 - 171,766,897
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253I08.bB6Ng01-253I08.g
ACCGA060230GA060231
length1,1561,200
definitionB6Ng01-253I08.b B6Ng01-253I08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcctgaaacgaactgtcgagtttgtatggattcatgacaacag
ttctatgaaacccaggccgtcgtgaagaagacaaccttgttggaagagtt
gtagaggagacatcgatgagggcagatgcagcacaaaccggatctcaccc
ggagaaaagcacactgggagggtgtgtgtcaaagcatcacacagtagcat
tgtagcaataacaccatggtgttccatgagctgagtgagactttatgaat
tgtgaggcagggaacacaacatctttaccaaatttcatttctaactctaa
tattttttcaaagcatttaaaaactggagcggcggagagggacttaattg
tatagccaacatcaactgtgagagtcactggtatggttccactctgagca
agtcacacactcaccatacttcaacactattgagagtcaggctgatccaa
ggctttctcggaggacgaaaggaacctggttctgtgtctcttcccagagg
caggcttggcaaggccattctggggctagtgctggggccaaaaggagtta
aggtttctgttccgggatttggcttcccacacccccataacgagactgga
gttatcagccccaagaccgatgtttgttcagtctctgatgcccttgagat
atcctgtgttccccttatgcaacactgcttgattagcctcctgctgactt
tgtcccattgcatgagagcttctgctgactctgtcccatttcacccctag
aaatactatatatgacgctgtacttcttaataagcttgcttggcataaaa
cgtaacttgtgtaagaccccagcttttggtattctttatcatctcatctc
ctggctctcccactatggaccctgtcactgaagactgacccactagtcga
agtcactacacaattaaattttgctgtgatagcttaagaatcatacaact
tctacttacaacatgggatgtatgtctcagaacaatatctacttcttatt
atgagtagacatatgtctactcttattatgctggcttgggagagtagaaa
cactgaaactggtcattcagaatgagacaattatagctttctacagtgtc
ttctgtgggggagagtccagggtgtgcttgaattcattgcacaatggcat
gaggag
gaattcttttcactttgtctttttttaaaagaagaattcaagtggaaatc
gtattccttcttgattgcttggtagagttcagtagtgaggtcaccatgtt
ctgggcatttctttgatggcagggatttcttttatcacacaggtctctgc
tcaggttttctctttcttcataattaaatattgatgtttgtccctgggag
tttgtgtcttacgatccctgagcccttgggcacttagttgttcataacaa
tctctagggcttttgtatttctgttgtgtctgttgtaatgtccccttcat
ttctgattttacttattgtttgtctccttttattttttggtgtatccagg
gggttgccaattggtcttgtccaaggaccaattgttggacaatctttgtt
gattttcggggtacatttcaaagactctatttcatttgtttatgttctga
tctgtatttttccttttattacttttggttcagtgataggttgtcatctg
tggatctttcttcttttttgctgtaggcattgtttgttgtaaacatccct
actggtgctgctttggctgaacaccaagtttaggtatgtttctctccaac
ttcacttttgagacataaaaaacaagcctttcctggtttcttccttgatc
cattggttgctcaagaataagttttaatgggctttcctactatttttttt
ttgctattgacgtctagttcttttgcatgttggtcagaagatacatcata
tgaatttaatattaaaaattagtcgagtttttctctaacacatttggagg
tgtttcatgtgctattgagaggcacgtgtgtttctgcacatgttggattc
tgtgttctgtagatggttaccagactcatttggtcgagggtacaattaat
tctactgttacccttgttgatttttctctctgaattacctctctattgtt
gtactaaagttgttagcttctgttattgttgtttgagtttatctctattt
tttatctgtgaaatttgccttataaacacccccagttcctttacatttct
tagagtttgctcgttcttttctggggatgaatgtattatcatatattgct
ttatttctggtgctgctttttggcatgaaggcatttattctggaatcata
ttgagcaatattctgtcttctctttttggagagtcccaaagcgtggcacg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171765749_171766897
seq2: B6Ng01-253I08.b_49_1204

seq1  GAATTCCTCCTGAAACGAACTGTCGAGTTTGTATGGATTCATGACAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGAAACGAACTGTCGAGTTTGTATGGATTCATGACAACAG  50

seq1  TTCTATGAAACCCAGGCCGTCGTGAAGAAGACAACCTTGTTGGAAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAAACCCAGGCCGTCGTGAAGAAGACAACCTTGTTGGAAGAGTT  100

seq1  GTAGAGGAGACATCGATGAGGGCAGATGCAGCACAAACCGGATCTCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAGACATCGATGAGGGCAGATGCAGCACAAACCGGATCTCACCC  150

seq1  GGAGAAAAGCACACTGGGAGGGTGTGTGTCAAAGCATCACACAGTAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGCACACTGGGAGGGTGTGTGTCAAAGCATCACACAGTAGCAT  200

seq1  TGTAGCAATAACACCATGGTGTTCCATGAGCTGAGTGAGACTTTATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAATAACACCATGGTGTTCCATGAGCTGAGTGAGACTTTATGAAT  250

seq1  TGTGAGGCAGGGAACACAACATCTTTACCAAATTTCATTTCTAACTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCAGGGAACACAACATCTTTACCAAATTTCATTTCTAACTCTAA  300

seq1  TATTTTTTCAAAGCATTTAAAAACTGGAGCGGCGGAGAGGGACTTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCAAAGCATTTAAAAACTGGAGCGGCGGAGAGGGACTTAATTG  350

seq1  TATAGCCAACATCAACTGTGAGAGTCACTGGTATGGTTCCACTCTGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAACATCAACTGTGAGAGTCACTGGTATGGTTCCACTCTGAGCA  400

seq1  AGTCACACACTCACCATACTTCAACACTATTGAGAGTCAGGCTGATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACACTCACCATACTTCAACACTATTGAGAGTCAGGCTGATCCAA  450

seq1  GGCTTTCTCGGAGGACGAAAGGAACCTGGTTCTGTGTCTCTTCCCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTCGGAGGACGAAAGGAACCTGGTTCTGTGTCTCTTCCCAGAGG  500

seq1  CAGGCTTGGCAAGGCCATTCTGGGGCTAGTGCTGGGGCCAAAAGGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGCAAGGCCATTCTGGGGCTAGTGCTGGGGCCAAAAGGAGTTA  550

seq1  AGGTTTCTGTTCCGGGATTTGGCTTCCCACACCCCCATAACGAGACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGTTCCGGGATTTGGCTTCCCACACCCCCATAACGAGACTGGA  600

seq1  GTTATCAGCCCCAAGACCGATGTTTGTTCAGTCTCTGATGCCCTTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGCCCCAAGACCGATGTTTGTTCAGTCTCTGATGCCCTTGAGAT  650

seq1  ATCCTGTGTTCCCCTTATGCAACACTGCTTGATTAGCCTCCTGCTGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGTTCCCCTTATGCAACACTGCTTGATTAGCCTCCTGCTGACTT  700

seq1  TGTCCCATTGCATGAGAGCTTCTGCTGACTCTGTCCCATTTCACCCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATTGCATGAGAGCTTCTGCTGACTCTGTCCCATTTCACCCCTAG  750

seq1  AAATACTATATATGACGCTGTACTTCTTAATAAGCTTGCTTGGCATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATATATGACGCTGTACTTCTTAATAAGCTTGCTTGGCATAAAA  800

seq1  CGTAACTTGTGTAAGACCCCAGCTTTTGGTATTCTTTATCATCTCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTTGTGTAAGACCCCAGCTTTTGGTATTCTTTATCATCTCATCTC  850

seq1  CTGGCTCTCCCACTATGGACCCTGTCACTGAAGACTGACCCACTAGTCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTCCCACTATGGACCCTGTCACTGAAGACTGACCCACTAGTCGA  900

seq1  AGTCACTACACAATTAAATTTTGCTGTGATAGCTTAAGAATCATACAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTACACAATTAAATTTTGCTGTGATAGCTTAAGAATCATACAACT  950

seq1  TCTACTTAC-ACAT-GGATGTATGTCTCAGAAC-ATATCTAC-TCTTATT  996
      ||||||||| |||| |||||||||||||||||| |||||||| |||||||
seq2  TCTACTTACAACATGGGATGTATGTCTCAGAACAATATCTACTTCTTATT  1000

seq1  ATGAGTAGACATATGTCTACTCTTATTATGCTGGCTTGGGAAGAGTAGAA  1046
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGAGTAGACATATGTCTACTCTTATTATGCTGGCTTGGG-AGAGTAGAA  1049

seq1  ACACTGAAACTGGTCATCCAGAATGAAGACAAATTATAGCTTTCTACAGT  1096
      ||||||||||||||||| ||||||| |||| |||||||||||||||||||
seq2  ACACTGAAACTGGTCATTCAGAATG-AGAC-AATTATAGCTTTCTACAGT  1097

seq1  GTC-TCTGTGGGGAGAG-GTCAAGGGTGTG-TTGAA-TCA-TGCAC-ATG  1140
      ||| ||||||||| ||| ||| |||||||| ||||| ||| ||||| |||
seq2  GTCTTCTGTGGGG-GAGAGTCCAGGGTGTGCTTGAATTCATTGCACAATG  1146

seq1  G-ATGAGGAG  1149
      | ||||||||
seq2  GCATGAGGAG  1156