BAC Information

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BAC

Clone NameB6Ng01-254F09
Chromosome2 (Build37)
Map Location 28,625,000 - 28,699,147
singlet/doubletdoublet
Overlap gene1190002A17Rik, LOC665643, Gtf3c4, Ddx31
Upstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik
Downstream geneBarhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254F09.bB6Ng01-254F09.g
ACCGA060826GA060827
length1,153858
definitionB6Ng01-254F09.b B6Ng01-254F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,697,988 - 28,699,147)(28,625,000 - 28,625,844)
sequence
gaattcaatgaatacaatttgaaatattgaatattagtaaaataatccta
cttcatcttaaaatttgtttctgcaaagttccaagtttatgaattttcca
gataaaggaaaataaagccagctttcatgtctgttgggtcttttgtcaga
gagcacaagatttgcaagcctcacctgacagttacaaaaggcctgaaggt
caccctaccacaagtttcttgagcagaactagcagtctcagtccacagag
ctcctccactcaggatggaacctattctgttccaagccactctcaggttt
aggaggcttttcaaccaatcaagattagacttgcctccttgagtctccag
gtcccatcatgatgaatggtactgcagcaacagcaagcagagggtctccc
ttattacacatcttccctcttcccgtccttagactaaacacaccaggtag
cacacagactgagacacctgcaaattctactcacccgttacagacaagtc
agagtctctcaaaaacaagtactcagaagctaacacgacagctcacacat
agaagcccagcactcacaagcctaaggcaggaggactgctgagttttagg
tcagcctgggcaacaaagtgagttcccagctaccaggctagagtaagaca
caaacaaaacaagtgctaaattcaagcaggttctccacggctgttaggct
aacactgaaaaatctccagggagatctaggaagcctctagaatacaacct
ctacccatctcctcagcttcaagttcaccttttaccctttgccagtcttt
cttaaattcccagaatgtactgtgctcttccatgaagataatgctgagat
gcctgattaacgatagcctatttggctagaaaagatcatatagtcatgtt
tctttgaaggctatacatcaaatgctgaaagttatttctgggaatggcaa
ctgtaggaaggggttatatcttttaatttttcttaaatgaaactctatta
ctttaataaccaggaaaacatccttaagaaaaatattttcatagtattaa
gacagagcacccaatttaggctgtgagggtctcaaatagtctatagtatc
acacgagctcctcattagcatatctgctcagcacatcttccactcccact
tgg
gaattcatgagaccataagaagatggaaaagacagtgtgggtaacagaac
acctttgagggaccagaggcaggacattcaggagtgcagagggtcagcca
aaacctagtaggtattaaaaatggtacaggaaaccctgctactttgcatt
ctgggataaaaaaagaaagaaagaaagaaagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagaaaagaa
aagagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaagaaaagaaagaaaagtgtcactttcctggtgaggaaaa
agaatttccaacaacctccaaaatgaccctaaatacacttctgccatttt
gttgatgtgaggcagcgttctcggcactgacttttataaaatcaaaatat
ccatccattctgggtcctgtagtataaaatattctgccaagatttaattc
tcatttatgcaaatttctttccctctttaattaaagataaaatacatttt
tactaaagaattgttttaaaatcaattcctttatggttgattatcagtaa
gtgtttggcttgcatgtctactttattctggacctatatacgaagggtcg
cagggctgtgtgaacatttctcagaaaaaggagtcatgagtgacaaaagc
ttttagaaaatcttggtgtgtagtctccaggaggctagcgggtgcccaag
ccaagttttgggtcaaaagcccctggggactaggcaagaagggctgcaga
gacagtcagccgttccatccgtcccccagggtggggcgttggggggcagg
gtgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_28697988_28699147
seq2: B6Ng01-254F09.b_43_1195 (reverse)

seq1  CCAAGTGGGAGTGGAAGATGTGCTGAGCAGATATGCTTAATGAGGGAGCT  50
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CCAAGTGGGAGTGGAAGATGTGCTGAGCAGATATGC-TAATGA-GGAGCT  48

seq1  CGGTGTGGATAACTAATAGACTATTTGGAAGACCCTTCACAGCTTAAATT  100
      | |||| ||| ||| ||||||||||||  |||||| ||||||| ||||||
seq2  C-GTGT-GAT-ACT-ATAGACTATTTG--AGACCC-TCACAGCCTAAATT  91

seq1  GGGTTGCTCTGTCTTAATACTATGAAAAATATTTTCTTAAGGATGTTTT-  149
      ||| ||||||||||||||||||||||||   |||||||||||||||||| 
seq2  GGG-TGCTCTGTCTTAATACTATGAAAATATTTTTCTTAAGGATGTTTTC  140

seq1  CTGGTTATTAAAGTAATAGAGTTTCATTTAAGAAAAATTAAAAGATATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATTAAAGTAATAGAGTTTCATTTAAGAAAAATTAAAAGATATAA  190

seq1  CCCC-TCCTACAGTTGCCATTCCCAGAAATAACTTTCAGCATTTGATGTA  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCTACAGTTGCCATTCCCAGAAATAACTTTCAGCATTTGATGTA  240

seq1  TAGCCTTCAAAGAAACATGACTATATGATCTTTTCTAGCCAAATAGGCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCAAAGAAACATGACTATATGATCTTTTCTAGCCAAATAGGCTA  290

seq1  TCGTTAATCAGGCATCTCAGCATTATCTTCATGGAAGAGCACAGTACATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAATCAGGCATCTCAGCATTATCTTCATGGAAGAGCACAGTACATT  340

seq1  CTGGGAATTTAAGAAAGACTGGCAAAGGGT-AAAGGTGAACTTGAAGCTG  397
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGGAATTTAAGAAAGACTGGCAAAGGGTAAAAGGTGAACTTGAAGCTG  390

seq1  AGGAGATGGGTAGAGGTTGTATTCTAGAGGCTTCCTAGATCTCCCTGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGGTAGAGGTTGTATTCTAGAGGCTTCCTAGATCTCCCTGGAG  440

seq1  ATTTTTCAGTGTTAGCCTAACAGCCGTGGAGAACCTGCTTGAATTTAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGTGTTAGCCTAACAGCCGTGGAGAACCTGCTTGAATTTAGCA  490

seq1  CTTGTTTTGTTTGTGTCTTACTCTAGCCTGGTAGCTGGGAACTCACTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGTTTGTGTCTTACTCTAGCCTGGTAGCTGGGAACTCACTTTG  540

seq1  TTGCCCAGGCTGACCTAAAACTCAGCAGTCCTCCTGCCTTAGGCTTGTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGGCTGACCTAAAACTCAGCAGTCCTCCTGCCTTAGGCTTGTGA  590

seq1  GTGCTGGGCTTCTATGTGTGAGCTGTCGTGTTAGCTTCTGAGTACTTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGCTTCTATGTGTGAGCTGTCGTGTTAGCTTCTGAGTACTTGTT  640

seq1  TTTGAGAGACTCTGACTTGTCTGTAACGGGTGAGTAGAATTTGCAGGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGACTCTGACTTGTCTGTAACGGGTGAGTAGAATTTGCAGGTGT  690

seq1  CTCAGTCTGTGTGCTACCTGGTGTGTTTAGTCTAAGGACGGGAAGAGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGTGTGCTACCTGGTGTGTTTAGTCTAAGGACGGGAAGAGGGA  740

seq1  AGATGTGTAATAAGGGAGACCCTCTGCTTGCTGTTGCTGCAGTACCATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTAATAAGGGAGACCCTCTGCTTGCTGTTGCTGCAGTACCATTC  790

seq1  ATCATGATGGGACCTGGAGACTCAAGGAGGCAAGTCTAATCTTGATTGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATGGGACCTGGAGACTCAAGGAGGCAAGTCTAATCTTGATTGGT  840

seq1  TGAAAAGCCTCCTAAACCTGAGAGTGGCTTGGAACAGAATAGGTTCCATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCTCCTAAACCTGAGAGTGGCTTGGAACAGAATAGGTTCCATC  890

seq1  CTGAGTGGAGGAGCTCTGTGGACTGAGACTGCTAGTTCTGCTCAAGAAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGAGGAGCTCTGTGGACTGAGACTGCTAGTTCTGCTCAAGAAAC  940

seq1  TTGTGGTAGGGTGACCTTCAGGCCTTTTGTAACTGTCAGGTGAGGCTTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAGGGTGACCTTCAGGCCTTTTGTAACTGTCAGGTGAGGCTTGC  990

seq1  AAATCTTGTGCTCTCTGACAAAAGACCCAACAGACATGAAAGCTGGCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTGCTCTCTGACAAAAGACCCAACAGACATGAAAGCTGGCTTT  1040

seq1  ATTTTCCTTTATCTGGAAAATTCATAAACTTGGAACTTTGCAGAAACAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTATCTGGAAAATTCATAAACTTGGAACTTTGCAGAAACAAA  1090

seq1  TTTTAAGATGAAGTAGGATTATTTTACTAATATTCAATATTTCAAATTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATGAAGTAGGATTATTTTACTAATATTCAATATTTCAAATTGT  1140

seq1  ATTCATTGAATTC  1160
      |||||||||||||
seq2  ATTCATTGAATTC  1153

seq1: chr2_28625000_28625844
seq2: B6Ng01-254F09.g_70_927

seq1  GAATTCATGAGACCATAAGAAGATGGAAAAGACAGTGTGGGTAACAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGACCATAAGAAGATGGAAAAGACAGTGTGGGTAACAGAAC  50

seq1  ACCTTTGAGGGACCAGAGGCAGGACATTCAGGAGTGCAGAGGGTCAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAGGGACCAGAGGCAGGACATTCAGGAGTGCAGAGGGTCAGCCA  100

seq1  AAACCTAGTAGGTATTAAAAATGGTACAGGAAACCCTGCTACTTTGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGTAGGTATTAAAAATGGTACAGGAAACCCTGCTACTTTGCATT  150

seq1  CTGGGATAAAAAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGA  200
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CTGGGATAAAAAAAGAAAGAAAGAAAGAA--AGAGAGAGAGAGAGAGAGA  198

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAG  248

seq1  AAAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  298

seq1  AGAAAAGAAAAGAAGAAAAGAAAGAAAAGTGTCACTTTCCTGGTGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAGAAAAGAAAGAAAAGTGTCACTTTCCTGGTGAGGAA  348

seq1  AAAGAATTTCCAACAACCTCCAAAATGACCCTAAATACACTTCTGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTCCAACAACCTCCAAAATGACCCTAAATACACTTCTGCCATT  398

seq1  TTGTTGATGTGAGGCAGCGTTCTCGGCACTGACTTTTATAAAATCAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATGTGAGGCAGCGTTCTCGGCACTGACTTTTATAAAATCAAAAT  448

seq1  ATCCATCCATTCTGGGTCCTGTAGTATAAAATATTCTGCCAAGATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATTCTGGGTCCTGTAGTATAAAATATTCTGCCAAGATTTAAT  498

seq1  TCTCATTTATGCAAATTTCTTTCCCTCTTTAATTAAAGATAAAATACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTATGCAAATTTCTTTCCCTCTTTAATTAAAGATAAAATACATT  548

seq1  TTTACTAAAGAATTGTTTTAAAATCAATTCCTTTATGGTTGATTATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAAGAATTGTTTTAAAATCAATTCCTTTATGGTTGATTATCAGT  598

seq1  AAGTGTTTGGCTTGCATGTCTACTTTATTCTGGACCTATATACGAAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGGCTTGCATGTCTACTTTATTCTGGACCTATATACGAAGGGT  648

seq1  CGCAGGGCTGTGTGAACATTTCTCAGGAAAAGGAGTCATGAGTGACAAAA  700
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGCAGGGCTGTGTGAACATTTCTCAGAAAAAGGAGTCATGAGTGACAAAA  698

seq1  GC-TTTAG-AAATCTTGGTGTG-AGTCTCCAGGAGGCTAGCGGGTG-CCA  746
      || ||||| ||||||||||||| ||||||||||||||||||||||| |||
seq2  GCTTTTAGAAAATCTTGGTGTGTAGTCTCCAGGAGGCTAGCGGGTGCCCA  748

seq1  AGCCAAGTTT--GGTCAAAAGCCCCT-GGGACTAAGCAAG-AGGGC-GCA  791
      ||||||||||  |||||||||||||| ||||||| ||||| ||||| |||
seq2  AGCCAAGTTTTGGGTCAAAAGCCCCTGGGGACTAGGCAAGAAGGGCTGCA  798

seq1  GAGACAG-CAGCAG-TCCATCCGT-CCCCAGG--GGGGCGTT-GGGGGCA  835
      ||||||| |||| | ||||||||| |||||||  |||||||| |||||||
seq2  GAGACAGTCAGCCGTTCCATCCGTCCCCCAGGGTGGGGCGTTGGGGGGCA  848

seq1  GGGTGTGTGA  845
      ||||||||||
seq2  GGGTGTGTGA  858