BAC Information

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BAC

Clone NameB6Ng01-255C06
Chromosome11 (Build37)2 (Build37)
Map Location 115,235,065 - 115,235,58159,339,029 - 59,339,324
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik
Downstream geneCdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255C06.bB6Ng01-255C06.g
ACCGA061421GA061422
length512766
definitionB6Ng01-255C06.b B6Ng01-255C06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,235,065 - 115,235,581)(59,339,029 - 59,339,324)
sequence
tcccattaacccctgagtaaggatggatactgtccacattcgcaccctaa
aagtaaccccactcatgagaaacttggagggtttgcactgaagggatccc
aggcagacacagggatttcaggcacttcccaacccgagaatataaaatcc
ccctttcagagaagacagttgcctgggacaaactcagatggtgtatgggg
gagggaggagggacgccagatgacctcactcattcacgtgtattcagtgc
cttactctgccaggcgctgacctcatactgatagaaaggacagatagaga
tcattgggtgacatttgtctctttgatgagaatgatcgggaatggggagg
gaacataacctacaggagaggtgagaacccaaaagaaagatccccagtgt
tgcctctttcccttcaatgcaagatacagggcgttttgctggcacgggag
ggcacagagaggcgagtgacacgccctcatccttttccagggaagctggt
gcgattctgagc
gaattcaccatgtagagaaagctggccttgaactcacaaagatccagttg
cttcttcctccccagtgctgggattaaaggggacagaccttgaattcctg
atcaccctccacacctagaaagtcctggaattacattatataatccacag
ccaggtagattgcttgacccccatccccatttttgcttagttttagattt
acattattttatgtgtctgagtattttgcctgcatgtgtgatgtctactg
tgtgtgtgcctggggccttcccagaccctaagcaaatgtcagattcccca
aaactggagttatagatggtatgagcactgaaaccaaacccagaccctcc
tctagagctacactctcaaaaacaaatacagaaccagctctccagccttc
ttctgttttgatttttgttgttgttgatgttgtttgtttgtttgtttgtt
tgtttttctgactctgtggagctctggctgtcctggaactcactctgtag
accaggctggccttgaactcagaaatccacctgcctctgcctcccaagtg
ctggaattaaaaaaaacaggcactgccaccttgccagcttgttttctttt
tcttttggttattttttttttcttttttttttttttttgatgggtttttc
aagacagggtttctctgtatagctcctgggtgtcccggaaatcactttta
gaccaagctggccccaaaatttaatattcctactgttttttgcctcccaa
gtgctgggattaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115235065_115235581
seq2: B6Ng01-255C06.b_48_565

seq1  GAATTCTCCCATTAACCCCTGAGTAAGGATGGATACTGTCCACATTCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCATTAACCCCTGAGTAAGGATGGATACTGTCCACATTCGCA  50

seq1  CCCTAAAAGTAACCCCACTCATGAGAAACTTGGAGGGTTTGCACTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGTAACCCCACTCATGAGAAACTTGGAGGGTTTGCACTGAAGG  100

seq1  GATCCCAGGCAGACACAGGGATTTCAGGCACTTCCCAACCCGAGAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGGCAGACACAGGGATTTCAGGCACTTCCCAACCCGAGAATATA  150

seq1  AAATCCCCCTTTCAGAGAAGACAGTTGCCTGGGACAAACTCAGATGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCCTTTCAGAGAAGACAGTTGCCTGGGACAAACTCAGATGGTGT  200

seq1  ATGGGGGAGGGAGGAGGGACGCCAGATGACCTCACTCATTCACGTGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGAGGGAGGAGGGACGCCAGATGACCTCACTCATTCACGTGTATT  250

seq1  CAGTGCCTTACTCTGCCAGGCGCTGACCTCATACTGATAGAAAGGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTACTCTGCCAGGCGCTGACCTCATACTGATAGAAAGGACAGA  300

seq1  TAGAGATCATTGGGTGACATTTGTCTCTTTGATGAGAATGATCGGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCATTGGGTGACATTTGTCTCTTTGATGAGAATGATCGGGAATG  350

seq1  GGGAGGGAACATAACCTACAGGAGAGGTGAGAACCCAAAAGAAAGATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAACATAACCTACAGGAGAGGTGAGAACCCAAAAGAAAGATCCC  400

seq1  CAGTGTTGCCTCTTTCCCTTCAATGCAAGATACAGGGCG-TCTGCTGGCA  449
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  CAGTGTTGCCTCTTTCCCTTCAATGCAAGATACAGGGCGTTTTGCTGGCA  450

seq1  CGGGAGGGCACAGAGAGGCGAGTGACACGCCCTCATCCTTTTCCAGGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGGCACAGAGAGGCGAGTGACACGCCCTCATCCTTTTCCAGGGAA  500

seq1  GCTGGTGCGATTCTGAGC  517
      ||||||||||||||||||
seq2  GCTGGTGCGATTCTGAGC  518

seq1: chr2_59339029_59339324
seq2: B6Ng01-255C06.g_520_834 (reverse)

seq1  CCTTTAATCCCAGCACTTGGGAGGCAGA----AGCAGGCAGATTTCTGAG  46
      |||||||||||||||||||||||||| |    || ||| | |||    | 
seq2  CCTTTAATCCCAGCACTTGGGAGGCAAAAAACAGTAGGAATATT--AAAT  48

seq1  TTCCAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA-GAGCTA  95
      ||   || |||| ||||||| ||||||| |||| ||||| ||| ||||||
seq2  TTTGGGGCCAGCTTGGTCTA-AAAGTGATTTCCGGGACACCCAGGAGCTA  97

seq1  CACAGAGAAACCCTGTCTCGAAAAAC--------AAAAACAAAAAAAGAA  137
       ||||||||||||||||| |||||||        ||||| ||||||||||
seq2  TACAGAGAAACCCTGTCTTGAAAAACCCATCAAAAAAAAAAAAAAAAGAA  147

seq1  AAAAAAATTGA--ACATTTAAAAGTATATTTCTTGCTGGGCA-GTGATGG  184
      ||||||| | |  | |   ||||| | |   |  |||||  | |||   |
seq2  AAAAAAAATAACCAAAAGAAAAAGAAAA---CAAGCTGGCAAGGTGGCAG  194

seq1  TGCATG---CCTTTAATCCCAGCAGTTGGGAGGCAGAGGCAGGCGGATTT  231
      ||| ||     |||||| |||||| |||||||||||||||||| ||||||
seq2  TGCCTGTTTTTTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT  244

seq1  CTGAGTTTGAGCCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGA  281
      |||||||  || ||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGA  294

seq1  GCT------ATACAGAAAAAC  296
      |||      |  |||||||||
seq2  GCTCCACAGAGTCAGAAAAAC  315