BAC Information

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BAC

Clone NameB6Ng01-255M01
Chromosome2 (Build37)
Map Location 146,548,549 - 146,691,479
singlet/doubletdoublet
Overlap geneLOC668918, Gm114
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255M01.bB6Ng01-255M01.g
ACCGA061884GA061885
length1,0631,140
definitionB6Ng01-255M01.b B6Ng01-255M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,548,549 - 146,549,611)(146,690,329 - 146,691,479)
sequence
gaattctcatcacagcgggttgcctcgccacaaagttattgccaggggac
agtgttcattagcttcaccaattctgtacttctgtttatctgtctattac
catcttagcagagtaaatcattcctgttcttcccagatccagtcccttct
cctccctccaaaacccaacatttgttacccataaatggggaaatgctcca
ggacaagggcaatagcttaaattgaattttcctaatgatttagtgaatcc
tagcacacatttttactttgttgtttagactcaagaaggcataaaatctc
caccatctatttatcatgtagttattttaatgtaaacatgtgtccattta
gatgaagtgttttcattattaagctaattccagcatgtctcagatagacc
atgagaagggggcagagctctggctgacagtaccaaacctgtcttggctc
agcctgctgtcagatacgtcttcattaggttttgtcattcaccggtggca
aatgctgtataaatggaatgacgatcaggcccgccttgataacttgtctt
atctcattagttttcacatcaaagttaatcagcaatgtgaattgtaattg
ctagaggagacaatgcgtagatcgctggtcgccccccccccatggcatct
tgaaacatcagcaggctggttggagcagataggctcggaaggaaaatgat
gtggaaggcataataagcgagctgctcagaattaatgagctaacccaata
agaaaagaatggccaatcaatgtgagttgggcaaatataatttagaaata
attgcttgattggttgcctatagtagactgatttgaccacacacaaggat
taagaattaagatgtcaaggcaaaaaataatttggcaactgagggcatgt
aatttttgtgtccttctttttatgattgaaagagatgtgtgtttgatacg
ctattcgccagaatgaaaacattagacacccctctgtcctctttctgttt
cccgcacaatgaagcccattcagaacaacattgtgatacctcctgaaccg
ggacatgaagaag
gaattctatagttgtgttttgtaaactacaaaattgctagaatatgtttt
ctttcactaggcagtctcccccgcccttatttcttacattatggctaact
tctggagcagctggcttatactcaattctcttttctcagggtctgccatc
aggattcctgtacatcagcatatgaacaatgcccctgtatatttttctcc
actttatgagaaaagcctgactcctcaaatgcattgtcagagccctacca
tgtgcacaggcattctgcacacacagaaacacagatcctcttaataaagg
aagggacagccttctgcacacacagaaacactgagatcctcttaataaag
gaagggacagccttctgtacacgggcgtctgtgaagagcccagttccttg
agattcttgctttctgaacactctctgttcaaggtcacccacaatgattc
ctaagggatctcttcccagtgcttagactgactatcacagtcacctagaa
gatcagtcacaaggctagagagatggctcagtggttagcagtgggtactg
tccctgcagaggacacagattcccacaacctactttgagagaatcacaag
tagctgtgactccagccctggagatccaatgtctcttgtctcctccacct
ccatgcacaaacccacacacagaccaagtcccacatatacctaattaaaa
atcagtattaagaaagtaaaaagagctcaaagcagtcacaagccacagtt
atttttttctactttttttgatctaattccattatgaattggtttgtcta
ttggtagttgccatacctgtgtgtgatggtcattaatacaattgttcatg
ctagtaaaatgtgcacgtatgtttcttacttcactgtgtagaagtgattt
actgatgtcctatcatgatttttatgcttgtctattatgttcttttctaa
atccacaaataaacatctatagttttcaaaatttgaaattagactaaaaa
tagactttaaaggatcatgatgattaacatatattattctcaaataatat
ataaactctagtgggctggcttttaaggcactggaaaatctgagtatgag
ctaaattattgacctgtagataggtatttcagatgataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146548549_146549611
seq2: B6Ng01-255M01.b_44_1106

seq1  GAATTCTCATCACAGCGGGTTGCCTCGCCACAAAGTTATTGCCAGGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCACAGCGGGTTGCCTCGCCACAAAGTTATTGCCAGGGGAC  50

seq1  AGTGTTCATTAGCTTCACCAATTCTGTACTTCTGTTTATCTGTCTATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCATTAGCTTCACCAATTCTGTACTTCTGTTTATCTGTCTATTAC  100

seq1  CATCTTAGCAGAGTAAATCATTCCTGTTCTTCCCAGATCCAGTCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGCAGAGTAAATCATTCCTGTTCTTCCCAGATCCAGTCCCTTCT  150

seq1  CCTCCCTCCAAAACCCAACATTTGTTACCCATAAATGGGGAAATGCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCAAAACCCAACATTTGTTACCCATAAATGGGGAAATGCTCCA  200

seq1  GGACAAGGGCAATAGCTTAAATTGAATTTTCCTAATGATTTAGTGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGGCAATAGCTTAAATTGAATTTTCCTAATGATTTAGTGAATCC  250

seq1  TAGCACACATTTTTACTTTGTTGTTTAGACTCAAGAAGGCATAAAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACATTTTTACTTTGTTGTTTAGACTCAAGAAGGCATAAAATCTC  300

seq1  CACCATCTATTTATCATGTAGTTATTTTAATGTAAACATGTGTCCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTATTTATCATGTAGTTATTTTAATGTAAACATGTGTCCATTTA  350

seq1  GATGAAGTGTTTTCATTATTAAGCTAATTCCAGCATGTCTCAGATAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTGTTTTCATTATTAAGCTAATTCCAGCATGTCTCAGATAGACC  400

seq1  ATGAGAAGGGGGCAGAGCTCTGGCTGACAGTACCAAACCTGTCTTGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGGGGGCAGAGCTCTGGCTGACAGTACCAAACCTGTCTTGGCTC  450

seq1  AGCCTGCTGTCAGATACGTCTTCATTAGGTTTTGTCATTCACCGGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGTCAGATACGTCTTCATTAGGTTTTGTCATTCACCGGTGGCA  500

seq1  AATGCTGTATAAATGGAATGACGATCAGGCCCGCCTTGATAACTTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTATAAATGGAATGACGATCAGGCCCGCCTTGATAACTTGTCTT  550

seq1  ATCTCATTAGTTTTCACATCAAAGTTAATCAGCAATGTGAATTGTAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTAGTTTTCACATCAAAGTTAATCAGCAATGTGAATTGTAATTG  600

seq1  CTAGAGGAGACAATGCGTAGATCGCTGGTCGCCCCCCCCCCATGGCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAGACAATGCGTAGATCGCTGGTCGCCCCCCCCCCATGGCATCT  650

seq1  TGAAACATCAGCAGGCTGGTTGGAGCAGATAGGCTCGGAAGGAAAATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCAGCAGGCTGGTTGGAGCAGATAGGCTCGGAAGGAAAATGAT  700

seq1  GTGGAAGGCATAATAAGCGAGCTGCTCAGAATTAATGAGCTAACCCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGCATAATAAGCGAGCTGCTCAGAATTAATGAGCTAACCCAATA  750

seq1  AGAAAAGAATGGCCAATCAATGTGAGTTGGGCAAATATAATTTAGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATGGCCAATCAATGTGAGTTGGGCAAATATAATTTAGAAATA  800

seq1  ATTGCTTGATTGGTTGCCTATAGTAGACTGATTTGACCACACACAAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGATTGGTTGCCTATAGTAGACTGATTTGACCACACACAAGGAT  850

seq1  TAAGAATTAAGATGTCAAGGCAAAAAAATAATTTGGCAACTGAGGGCATG  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAGAATTAAGATGTCAAGGC-AAAAAATAATTTGGCAACTGAGGGCATG  899

seq1  TAATTTTTGTGTCCTTCTTTTTATGATTGAAAGAGATGTGTGTTTGATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGTGTCCTTCTTTTTATGATTGAAAGAGATGTGTGTTTGATAC  949

seq1  GCTATTCGCCAGAATGAAAACATTAGACACCCTCTTGTTCTCTTTCTGTT  1000
      ||||||||||||||||||||||||||||||||   ||| |||||||||||
seq2  GCTATTCGCCAGAATGAAAACATTAGACACCCCTCTGTCCTCTTTCTGTT  999

seq1  TCCCGCACAATGAAGGCCCATTCAGAACACAATTGTGATA-CTCCTGAA-  1048
      |||||||||||||| ||||||||||||||  ||||||||| |||||||| 
seq2  TCCCGCACAATGAA-GCCCATTCAGAACAACATTGTGATACCTCCTGAAC  1048

seq1  CGGGACATGAAGAAG  1063
      |||||||||||||||
seq2  CGGGACATGAAGAAG  1063

seq1: chr2_146690329_146691479
seq2: B6Ng01-255M01.g_67_1206 (reverse)

seq1  GTTATCATCCTTAAAATTAACTAATCTACAGTGTCATTTAATATTTAGCT  50
      |||||||||  | ||||  ||  |||||||| ||||   |  ||||||||
seq2  GTTATCATC--TGAAAT--ACCTATCTACAG-GTCA---ATAATTTAGCT  42

seq1  CATACTCAGATTTTTCCAGTTCCCCTAAAAAGCCAACCCACTAGAGTTTA  100
      |||||||||| |||||||||   ||| |||||||| ||||||||||||||
seq2  CATACTCAGA-TTTTCCAGT--GCCTTAAAAGCCAGCCCACTAGAGTTTA  89

seq1  TATATTATTTGAGA--TATATATTGTTATCATCATGATCCTTTAAAGTCT  148
      ||||||||||||||   ||||||  | |||||||||||||||||||||||
seq2  TATATTATTTGAGAATAATATATGTTAATCATCATGATCCTTTAAAGTCT  139

seq1  A-TTTTAGTCTAATTTCAAATTTTTGAAAAACTATAAGATGTTTATTTGT  197
      | ||||||||||||||||||||||   |||||||| ||||||||||||||
seq2  ATTTTTAGTCTAATTTCAAATTTT--GAAAACTAT-AGATGTTTATTTGT  186

seq1  GGATTTAGAAAAGAACATAATAGACAAGCATAAAAATCATGATAGGACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGAAAAGAACATAATAGACAAGCATAAAAATCATGATAGGACAT  236

seq1  CAGTAAATCACTTCTACACAGTGAAGTAAGAAACATACGTGCACATTTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATCACTTCTACACAGTGAAGTAAGAAACATACGTGCACATTTTA  286

seq1  CTAGCATGAACAATTGTATTAATGACCATCACACACAGGTATGGCAACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGAACAATTGTATTAATGACCATCACACACAGGTATGGCAACTA  336

seq1  CCAATAGACAAACCAATTCATAATGGAATTAGATCAAAAAAAGTAGAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGACAAACCAATTCATAATGGAATTAGATCAAAAAAAGTAGAAAA  386

seq1  AAATAACTGTGGCTTGTGACTGCTTTGAGCTCTTTTTACTTTCTTAATAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGTGGCTTGTGACTGCTTTGAGCTCTTTTTACTTTCTTAATAC  436

seq1  TGATTTTTAATTAGGTATATGTGGGACTTGGTCTGTGTGTGGGTTTGTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAATTAGGTATATGTGGGACTTGGTCTGTGTGTGGGTTTGTGC  486

seq1  ATGGAGGTGGAGGAGACAAGAGACATTGGATCTCCAGGGCTGGAGTCACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTGGAGGAGACAAGAGACATTGGATCTCCAGGGCTGGAGTCACA  536

seq1  GCTACTTGTGATTCTCTCAAAGTAGGTTGTGGGAATCTGTGTCCTCTGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGTGATTCTCTCAAAGTAGGTTGTGGGAATCTGTGTCCTCTGCA  586

seq1  GGGACAGTACCCACTGCTAACCACTGAGCCATCTCTCTAGCCTTGTGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTACCCACTGCTAACCACTGAGCCATCTCTCTAGCCTTGTGACT  636

seq1  GATCTTCTAGGTGACTGTGATAGTCAGTCTAAGCACTGGGAAGAGATCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTAGGTGACTGTGATAGTCAGTCTAAGCACTGGGAAGAGATCCC  686

seq1  TTAGGAATCATTGTGGGTGACCTTGAACAGAGAGTGTTCAGAAAGCAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATCATTGTGGGTGACCTTGAACAGAGAGTGTTCAGAAAGCAAGA  736

seq1  ATCTCAAGGAACTGGGCTCTTCACAGACGCCCGTGTACAGAAGGCTGTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGGAACTGGGCTCTTCACAGACGCCCGTGTACAGAAGGCTGTCC  786

seq1  CTTCCTTTATTAAGAGGATCTCAGTGTTTCTGTGTGTGCAGAAGGCTGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTATTAAGAGGATCTCAGTGTTTCTGTGTGTGCAGAAGGCTGTC  836

seq1  CCTTCCTTTATTAAGAGGATCTGTGTTTCTGTGTGTGCAGAATGCCTGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTATTAAGAGGATCTGTGTTTCTGTGTGTGCAGAATGCCTGTG  886

seq1  CACATGGTAGGGCTCTGACAATGCATTTGAGGAGTCAGGCTTTTCTCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTAGGGCTCTGACAATGCATTTGAGGAGTCAGGCTTTTCTCATA  936

seq1  AAGTGGAGAAAAATATACAGGGGCATTGTTCATATGCTGATGTACAGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGAAAAATATACAGGGGCATTGTTCATATGCTGATGTACAGGAA  986

seq1  TCCTGATGGCAGACCCTGAGAAAAGAGAATTGAGTATAAGCCAGCTGCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGGCAGACCCTGAGAAAAGAGAATTGAGTATAAGCCAGCTGCTC  1036

seq1  CAGAAGTTAGCCATAATGTAAGAAATAAGGGCGGGGGAGACTGCCTAGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTAGCCATAATGTAAGAAATAAGGGCGGGGGAGACTGCCTAGTG  1086

seq1  AAAGAAAACATATTCTAGCAATTTTGTAGTTTACAAAACACAACTATAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACATATTCTAGCAATTTTGTAGTTTACAAAACACAACTATAGA  1136

seq1  ATTC  1151
      ||||
seq2  ATTC  1140