BAC Information

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BAC

Clone NameB6Ng01-255N12
Chromosome2 (Build37)
Map Location 135,747,697 - 135,864,038
singlet/doubletdoublet
Overlap genePlcb4
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N12.bB6Ng01-255N12.g
ACCGA061952GA061953
length1,2111,127
definitionB6Ng01-255N12.b B6Ng01-255N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,862,829 - 135,864,038)(135,747,697 - 135,748,830)
sequence
gaattcactctttagaccaggctggactcaaggcctagtaagtcatagaa
atccacctatttctgcctctcaaatgctgggataaaggcgagtgccatca
ccacccagctcaagttctacattgtaaaagcatagtaatttcttctcttc
tccaacaccacagttctccagattggaagaaaatccaatttgacagtcat
tcttggtgcccttctcatatcgcaatttggtctcctctttatttgtgtgt
gactctgggtgcacctctgggtttctagacagtttcgctgcccgcaggag
tttgctttccccacagaagtgttgggtagggccggagagatggctcagcg
gttaagagcactgactgctcttccagaggttctgagttcaaatcccaaca
acgacatggtggctcacaaccatctgtaatgggatccaatgcactcttct
ggtgtgtctgaagacagctacagtgtagttacatataataaataagtaaa
tctttttttaaaaaaagtgttgggtagtcactatcctcaggtgcgactct
catccatggaaagagaaagttggagaataattctttaccctgggtagatg
agttctggaataaatatgcattgtgcctcacaagatttagtgggcctgag
ctcttagcagtattgatttccataattagatttttgtcttttgatcctcc
tgtgtcacaacctcaaaacgttttctccctaacaaacacttgtgctctaa
atcttgttagagagtcaaatctggggacacaccctgtacaactgatttgt
cttcttcaaaatcatagttcttgggcactatggtgtggagagatctccat
atctcaatctccaagtcactgttgttcttgtctctactgcagggacacac
agtccatgtccaagaaagccttttggtattgcatggttctttccttcaat
aataactaataaagcaattaaaaagtgaagcctttcaagttgtcgcatgc
cctttccatctcagatgctgcaagtgtcctgggtgccttagaagcctgtg
ttgttgaagagcctcgcgctttgctgctctcttcttcaatagctaggaaa
cttggttcttgtagtcctgctctcatctcattgctagttttcacacctct
tgcaattcctatttcgctaggtcaatgaccataagttggcaaaccctggt
ttttaccagaa

gaattcactagatacttccttattcttcatcatcagtatgctgtagaata
aacaattaagaaaaatctgactctaaccaaattggtggtttctgacatcc
aaagattgatattcttggttttattaaagttttaaaattcttcgaatatt
ttagagcatcccatatgaatgccagtttgctgaaataaatgggattactt
gaattttttcaaatgccttttgggctttgtaaggatataggtgtgccatg
gactttgaagtgtattaatagatgttatttatttatgtcaggaagtagag
cgagtataaggcccaggttttctttcttctgttcaatatgtaacagtctg
tggacagaaatggggaaagtggagtaagattctatagattcaaaaggacc
tgttacaagatatctttgaaatcaggcttaggcaaagcaaaaaacaaaac
aaaacaaaacaccctgagtaataccactggacagatggcatctgaagtga
cacttgcctgagttataacccagaacagcactttgtcctctcctctctag
ggactgtttagaggtcctttttgacctaaccatctagcgttgtcaacata
accagcaagactgacagcctgttttgactgtctggatggcgctaactgtg
gccaacagtatctaaacccaacccaagccttaccagctctgtcaaacaca
gccaccgtgtgcctagccggcagcctgcatcctaccaggtaccattctcc
atgctccgaactagttctaggagtccattccgtctctaactctctccagc
ttctccctggaaagagaacagaatgaagaacatgtgtggcttggagactt
tcagccatgtcaaggaaaagggcctggtcacttttccattcccccatctc
tgcttccaaacttggacacattgtgagaatgtcagccgtttcccaaaggc
cttctgtgattctccactgggttgtgtttcttctctgagttgcaggcaga
tccctatagctcctggtcactggtctctgtagtttactattgtgaatcac
tgtctcaagcttttttgctgtctttctcaaacccatcatagcccgacccg
atttcctactctcatttacacatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_135862829_135864038
seq2: B6Ng01-255N12.b_51_1261 (reverse)

seq1  TTCT-GTAAA---CAGGGTTTTGCCAACTTATGGTCCATTACACTTAAGC  46
      |||| |||||   ||||| |||||||||||||||| ||||   ||  |||
seq2  TTCTGGTAAAAACCAGGG-TTTGCCAACTTATGGT-CATTGACCT--AGC  46

seq1  AGAAATAGAGAATGC-AGAGG-GTGAAAACTAGGCAATGGAGATGGAAGA  94
       |||||||  | ||| ||||| |||||||||| ||||| ||||||  |||
seq2  -GAAATAGGAATTGCAAGAGGTGTGAAAACTA-GCAAT-GAGATG--AGA  91

seq1  GCAGAACTACAAGAACACAGTTTCCTAGCTATTGAAGAAGAGAAGCAGCA  144
      |||| |||||||||||  |||||||||||||||||||||||| |||||||
seq2  GCAGGACTACAAGAACCAAGTTTCCTAGCTATTGAAGAAGAG-AGCAGCA  140

seq1  AAGCGCGGAGCTC-TCAACAACACAGGCTTCTAAGGCACCCAGGACACTT  193
      |||||||  |||| ||||||||||||||||||||||||||||||||||||
seq2  AAGCGCGAGGCTCTTCAACAACACAGGCTTCTAAGGCACCCAGGACACTT  190

seq1  GCAGCATCTGAGATGGAAA-GGCATGCGACAACTTGAAAGGCTTCACTTT  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCAGCATCTGAGATGGAAAGGGCATGCGACAACTTGAAAGGCTTCACTTT  240

seq1  TT-ATTGCTTTATTAGTTATTATTGAAGGAAAGAACCATGCAATA-CAAA  290
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAATTGCTTTATTAGTTATTATTGAAGGAAAGAACCATGCAATACCAAA  290

seq1  AGGCTTTCTTGGACATGGACTGTGTGTCCCTGCAGTAGAGACAAGAACAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCTTGGACATGGACTGTGTGTCCCTGCAGTAGAGACAAGAACAA  340

seq1  CAGTGACTTGGAGATTGAGATATGGAGATCTCTCCACACCATAGTGCCCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTTGGAGATTGAGATATGGAGATCTCTCCACACCATAGTGCCCA  390

seq1  AGAACTATGATTTTGAAGAAGACAAATCAGTTGTACAGGGTGTGTCCCCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATGATTTTGAAGAAGACAAATCAGTTGTACAGGGTGTGTCCCCA  440

seq1  GATTTGACTCTCTAACAAGATTTAGAGCACAAGTGTTTGTTAGGGAGAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACTCTCTAACAAGATTTAGAGCACAAGTGTTTGTTAGGGAGAAA  490

seq1  ACGTTTTGAGGTTGTGACACAGGAGGATCAAAAGACAAAAATCTAATTAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTGAGGTTGTGACACAGGAGGATCAAAAGACAAAAATCTAATTAT  540

seq1  GGAAATCAATACTGCTAAGAGCTCAGGCCCACTAAATCTTGTGAGGCACA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCAATACTGCTAAGAGCTCAGGCCCACTAAATCTTGTGAGGCACA  590

seq1  ATGCATATTTATTCCAGAACTCATCTACCCAGGGTAAAGAATTATTCTCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTTATTCCAGAACTCATCTACCCAGGGTAAAGAATTATTCTCC  640

seq1  AACTTTCTCTTTCCATGGATGAGAGTCGCACCTGAGGATAGTGACTACCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTCTTTCCATGGATGAGAGTCGCACCTGAGGATAGTGACTACCC  690

seq1  AACACTTTTTTTAAAAAAAGATTTACTTATTTATTATATGTAACTACACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTTTTAAAAAAAGATTTACTTATTTATTATATGTAACTACACT  740

seq1  GTAGCTGTCTTCAGACACACCAGAAGAGTGCATTGGATCCCATTACAGAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTCTTCAGACACACCAGAAGAGTGCATTGGATCCCATTACAGAT  790

seq1  GGTTGTGAGCCACCATGTCGTTGTTGGGATTTGAACTCAGAACCTCTGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCACCATGTCGTTGTTGGGATTTGAACTCAGAACCTCTGGA  840

seq1  AGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCGGCCCTACCCAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCGGCCCTACCCAA  890

seq1  CACTTCTGTGGGGAAAGCAAACTCCTGCGGGCAGCGAAACTGTCTAGAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTGGGGAAAGCAAACTCCTGCGGGCAGCGAAACTGTCTAGAAA  940

seq1  CCCAGAGGTGCACCCAGAGTCACACACAAATAAAGAGGAGACCAAATTGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGTGCACCCAGAGTCACACACAAATAAAGAGGAGACCAAATTGC  990

seq1  GATATGAGAAGGGCACCAAGAATGACTGTCAAATTGGATTTTCTTCCAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGAAGGGCACCAAGAATGACTGTCAAATTGGATTTTCTTCCAAT  1040

seq1  CTGGAGAACTGTGGTGTTGGAGAAGAGAAGAAATTACTATGCTTTTACAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAACTGTGGTGTTGGAGAAGAGAAGAAATTACTATGCTTTTACAA  1090

seq1  TGTAGAACTTGAGCTGGGTGGTGATGGCACTCGCCTTTATCCCAGCATTT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACTTGAGCTGGGTGGTGATGGCACTCGCCTTTATCCCAGCATTT  1140

seq1  GAGAGGCAGAAATAGGTGGATTTCTATGACTT-CTAGGCCTTGAGTCCAG  1189
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGAGGCAGAAATAGGTGGATTTCTATGACTTACTAGGCCTTGAGTCCAG  1190

seq1  CCTGGTCTAAAGAGTGAATTC  1210
      |||||||||||||||||||||
seq2  CCTGGTCTAAAGAGTGAATTC  1211


seq1: chr2_135747697_135748830
seq2: B6Ng01-255N12.g_69_1195

seq1  GAATTCACTAGATACTTCCTTATTCTTCATCATCAGTATGCTGTAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGATACTTCCTTATTCTTCATCATCAGTATGCTGTAGAATA  50

seq1  AACAATTAAGAAAAATCTGACTCTAACCAAATTGGTGGTTTCTGACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAAGAAAAATCTGACTCTAACCAAATTGGTGGTTTCTGACATCC  100

seq1  AAAGATTGATATTCTTGGTTTTATTAAAGTTTTAAAATTCTTCGAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGATATTCTTGGTTTTATTAAAGTTTTAAAATTCTTCGAATATT  150

seq1  TTAGAGCATCCCATATGAATGCCAGTTTGCTGAAATAAATGGGATTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCATCCCATATGAATGCCAGTTTGCTGAAATAAATGGGATTACTT  200

seq1  GAATTTTTTCAAATGCCTTTTGGGCTTTGTAAGGATATAGGTGTGCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTCAAATGCCTTTTGGGCTTTGTAAGGATATAGGTGTGCCATG  250

seq1  GACTTTGAAGTGTATTAATAGATGTTATTTATTTATGTCAGGAAGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGAAGTGTATTAATAGATGTTATTTATTTATGTCAGGAAGTAGAG  300

seq1  CGAGTATAAGGCCCAGGTTTTCTTTCTTCTGTTCAATATGTAACAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTATAAGGCCCAGGTTTTCTTTCTTCTGTTCAATATGTAACAGTCTG  350

seq1  TGGACAGAAATGGGGAAAGTGGAGTAAGATTCTATAGATTCAAAAGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAATGGGGAAAGTGGAGTAAGATTCTATAGATTCAAAAGGACC  400

seq1  TGTTACAAGATATCTTTGAAATCAGGCTTAGGCAAAGCAAAAAACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAGATATCTTTGAAATCAGGCTTAGGCAAAGCAAAAAACAAAAC  450

seq1  AAAACAAAACACCCTGAGTAATACCACTGGACAGATGGCATCTGAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACACCCTGAGTAATACCACTGGACAGATGGCATCTGAAGTGA  500

seq1  CACTTGCCTGAGTTATAACCCAGAACAGCACTTTGTCCTCTCCTCTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCTGAGTTATAACCCAGAACAGCACTTTGTCCTCTCCTCTCTAG  550

seq1  GGACTGTTTAGAGGTCCTTTTTGACCTAACCATCTAGCGTTGTCAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTTAGAGGTCCTTTTTGACCTAACCATCTAGCGTTGTCAACATA  600

seq1  ACCAGCAAGACTGACAGCCTGTTTTGACTGTCTGGATGGCGCTAACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGACTGACAGCCTGTTTTGACTGTCTGGATGGCGCTAACTGTG  650

seq1  GCCAACAGTATCTAAACCCAACCCAAGCCTTACCAGCTCTGTCAAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTATCTAAACCCAACCCAAGCCTTACCAGCTCTGTCAAACACA  700

seq1  GCCACCGTGTGCCTAGCCGGCAGCCTGCATCCTACCAGGTACCATTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCGTGTGCCTAGCCGGCAGCCTGCATCCTACCAGGTACCATTCTCC  750

seq1  ATGCTCCGAACTAGTTCTAGGAGTCCATTCCGTCTCTAACTCTCTCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCGAACTAGTTCTAGGAGTCCATTCCGTCTCTAACTCTCTCCAGC  800

seq1  TTCTCCCTGGAAAGAGAACAGAATGAAGAACATGTGTGGCTTGGAGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGGAAAGAGAACAGAATGAAGAACATGTGTGGCTTGGAGACTT  850

seq1  TCAGGCCATGTCAAGGAAAAGGGCCTGGTCACTTTTCCATTCCCCCATCT  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-GCCATGTCAAGGAAAAGGGCCTGGTCACTTTTCCATTCCCCCATCT  899

seq1  CTGCTTCCAAACTTGGACACATTGTGAGAATGTCAGCCGTTTCCCAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCAAACTTGGACACATTGTGAGAATGTCAGCCGTTTCCCAAAGG  949

seq1  CC-TCTGTGATTCT-CACTGGGTTGTGTTTCTTCTCTTGAGTTGCAGGCA  998
      || ||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CCTTCTGTGATTCTCCACTGGGTTGTGTTTCTTCTC-TGAGTTGCAGGCA  998

seq1  GATCCCTTATAGCTTCCTGGTCACTGGTCTCTGTAGTTTACTATTTGTGA  1048
      |||||| |||||| ||||||||||||||||||||||||||||| ||||||
seq2  GATCCC-TATAGC-TCCTGGTCACTGGTCTCTGTAGTTTACTA-TTGTGA  1045

seq1  ATTCCACTGTCTCAGGCTTTTTTGCTGTCCTTTCTCAACCCCATCATAGC  1098
      ||  |||||||||| ||||||||||||| ||||||||| |||||||||||
seq2  AT--CACTGTCTCAAGCTTTTTTGCTGT-CTTTCTCAAACCCATCATAGC  1092

seq1  CCGACCCCGTTTTCTTACTCTCCTTTACACATGCAT  1134
      |||| |||| |||| ||||||| |||||||||||||
seq2  CCGA-CCCGATTTCCTACTCTCATTTACACATGCAT  1127


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