BAC Information

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BAC

Clone NameB6Ng01-256O12
Chromosome2 (Build37)
Map Location 129,398,851 - 129,560,296
singlet/doubletdoublet
Overlap geneSirpa, Pdyn
Upstream geneLOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik
Downstream genePpia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256O12.bB6Ng01-256O12.g
ACCGA062745GA062746
length1,1021,153
definitionB6Ng01-256O12.b B6Ng01-256O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,559,204 - 129,560,296)(129,398,851 - 129,400,011)
sequence
gaattccacggaagcctctcgggagtatctttttctccatctttgagtat
ctgctttctatcctttctgttcatttgttgttgttgctgtgatttctgtt
gccgttgctgcagggttttttcgtggctctccacctgcacatttgtaact
gacaagagggtgtgaagaagaatgagtgatgggaagcgctaaaagttaat
gcactcagcaaacagagaaatcctaaccagtaataagcataattgctctt
caaaatccacccaaagccctcgcccccaacagcaggcaacaaagaggcag
aacatgttcacatcagacacctccttagctgggagggtgggagagtgtcg
gaggaatgagtcagttgtcagcttcgctgcgggctcatctctgagcctca
ggtacctgggcccggctccagactttatctgtgtctccttgttctatggc
tgaacgaaggagtgctggaggggtctcgaggtcataccagccttagatgc
catgttggcatggctgtgctccagtgaacctgtagtttgtgaaacactaa
aatacaatttaaaaaaacagtgttatgtttcaagatgccttgtccacgag
gtgttactatgtgacaccttctgagtccaaggaagagaaagctatcccca
actgattgaaagagaaatctcggcaactttgtctcctgagtaggagttag
gaacatggtctatttgtgcagcagacatcaggatgatagaagactgtgac
ctgctaatttattcaaagatgcaggtcaaagcaggaggaggaaggtgtaa
gagggaagatgggatgtaaaagcagtacgtgtttgttttttattttgttc
tgtttttttctgcgctttgttttgattgggcccaggcccaggcttggcct
cgctcagcaaatcctgtctgttagcttctcaaaggctaagctggcaggca
tgtcccccacccagtggacaggataccttagcccctgctcagataagtgg
atgagttttgctgctagacattaattgttgagagtttctgggttgttata
gactaggactttttgggcatgttattctttttagcattcaggtttcttat
ct
gaattcctagagaagtttggtggcttacagcagcagatgtagacaagagt
tgatcactgggtctgtcccatggaatattcggcttagcagaatccactgg
tggcctctcctcccccttgtcccagtcagtccagggcaaaaggtgctaac
agcccctcccccatttgagaacattcagtatcccgttctaggtgcttcct
ggctctccaacactagattctgctctatgcgtgttccttgggcccccttg
ggcgagcctctgagaagccccttggagcacctcttgggcgagcccctgag
aagccacttggagcaccattttgcaggtaagcaaactgaggcacgctggt
acttgggattacacaggtagaaagtgatggagacaaactttgaatgtggt
ctgagcccttgagccttttccctgaaaagcagcctagtgattaaaggtga
cactctctggagcagcctgcaaggttcaaagctaatctggtgcctcttca
gtttcctcctccagaaaaaaagaagcttagaccctggagaagccaccaca
gggattagagaggagctgtgggcatccaccttcactgaaagcttgcccta
attaccccacagacccctcctcttggcccagggcacctctgcccactgac
tctgcttctctggctcccttactttttttttttcttgttgccgtctcttc
tggaacatatgtcttgctttgaaaatcctctctttgccaatttctccccc
tttcacgctcccatctgggtcctaaaccctagctctgcatttacctgatg
cataaacccaagctaagcccaggctggccatttctacccttgccctctta
aaatttcttcctggagaactccctaagtgctgtcacttgagagttgaatt
ctataggtgagggcgtggtcaggaatctgcattttaaaccatgccttcct
atgggagagggctggctcttggattgtactctgtgaagcacccatcactt
ctcagttttctctctgtagggagggggcagaatcttcctccaaggttgcc
aaagtgaaatgaatttatcttgcaaccaccattcctttgttctgtcctag
ttttgatatgccattggtcttgcacttcggttgacttcctattcattttt
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129559204_129560296
seq2: B6Ng01-256O12.b_50_1151 (reverse)

seq1  AGATAAGAAAACTG-ATGCTAAAAAG-ATAACATGCCC--AAAGTCCTAT  46
      |||||||||| ||| ||||||||||| |||||||||||  ||||||||| 
seq2  AGATAAGAAACCTGAATGCTAAAAAGAATAACATGCCCAAAAAGTCCTA-  49

seq1  GTCTAT-ACAACCCAAGAAACTCTCAAC-ATTATTGTCCTAGCAGCAAAA  94
      |||||| ||||||| ||||||||||||| |||| ||| ||||||||||||
seq2  GTCTATAACAACCC-AGAAACTCTCAACAATTAATGT-CTAGCAGCAAAA  97

seq1  CTCATTCACTTATCTGAGCAGGGGCT-ATGTAT-CTGTCCACTGGGT-GG  141
      ||||| |||||||||||||||||||| | |||| ||||||||||||| ||
seq2  CTCATCCACTTATCTGAGCAGGGGCTAAGGTATCCTGTCCACTGGGTGGG  147

seq1  GGACATGCCTGCCAGCTTAGCCTTTGAG-AGCTAACAGACAGGATTTGCT  190
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGACATGCCTGCCAGCTTAGCCTTTGAGAAGCTAACAGACAGGATTTGCT  197

seq1  GAGCGAGGCC-AGCCTGGGCCTGGG-CCAATCAAAACAAAGCGCAGAAAA  238
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GAGCGAGGCCAAGCCTGGGCCTGGGCCCAATCAAAACAAAGCGCAGAAAA  247

seq1  AAACAGAACAAAATAAAAAACAAACACGTACTGCTTTTACATCCCATCTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAAAATAAAAAACAAACACGTACTGCTTTTACATCCCATCTT  297

seq1  CCCTCTTACACCTTCCTCCTCCTGCTTTGACCTGCATCTTTGAATAAATT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTACACCTTCCTCCTCCTGCTTTGACCTGCATCTTTGAATAAATT  347

seq1  AGCAGGTCACAGTCTTCTATCATCCTGATGTCTGCTGCACAAATAGACCA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCACAGTCTTCTATCATCCTGATGTCTGCTGCACAAATAGACCA  397

seq1  TGTTCCTAACTCCTACTCAGGAGACAAAGTTGCCGAGATTTCTCTTTCAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAACTCCTACTCAGGAGACAAAGTTGCCGAGATTTCTCTTTCAA  447

seq1  TCAGTTGGGGATAGCTTTCTCTTCCTTGGACTCAGAAGGTGTCACATAGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGGGATAGCTTTCTCTTCCTTGGACTCAGAAGGTGTCACATAGT  497

seq1  AACACCTCGTGGACAAGGCATCTTGAAACATAACACTGTTTTTTTAAATT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCGTGGACAAGGCATCTTGAAACATAACACTGTTTTTTTAAATT  547

seq1  GTATTTTAGTGTTTCACAAACTACAGGTTCACTGGAGCACAGCCATGCCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAGTGTTTCACAAACTACAGGTTCACTGGAGCACAGCCATGCCA  597

seq1  ACATGGCATCTAAGGCTGGTATGACCTCGAGACCCCTCCAGCACTCCTTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCATCTAAGGCTGGTATGACCTCGAGACCCCTCCAGCACTCCTTC  647

seq1  GTTCAGCCATAGAACAAGGAGACACAGATAAAGTCTGGAGCCGGGCCCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCCATAGAACAAGGAGACACAGATAAAGTCTGGAGCCGGGCCCAG  697

seq1  GTACCTGAGGCTCAGAGATGAGCCCGCAGCGAAGCTGACAACTGACTCAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGAGGCTCAGAGATGAGCCCGCAGCGAAGCTGACAACTGACTCAT  747

seq1  TCCTCCGACACTCTCCCACCCTCCCAGCTAAGGAGGTGTCTGATGTGAAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGACACTCTCCCACCCTCCCAGCTAAGGAGGTGTCTGATGTGAAC  797

seq1  ATGTTCTGCCTCTTTGTTGCCTGCTGTTGGGGGCGAGGGCTTTGGGTGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGCCTCTTTGTTGCCTGCTGTTGGGGGCGAGGGCTTTGGGTGGA  847

seq1  TTTTGAAGAGCAATTATGCTTATTACTGGTTAGGATTTCTCTGTTTGCTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAGCAATTATGCTTATTACTGGTTAGGATTTCTCTGTTTGCTG  897

seq1  AGTGCATTAACTTTTAGCGCTTCCCATCACTCATTCTTCTTCACACCCTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTAACTTTTAGCGCTTCCCATCACTCATTCTTCTTCACACCCTC  947

seq1  TTGTCAGTTACAAATGTGCAGGTGGAGAGCCACGAAAAAACCCTGCAGCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTTACAAATGTGCAGGTGGAGAGCCACGAAAAAACCCTGCAGCA  997

seq1  ACGGCAACAGAAATCACAGCAACAACAACAAATGAACAGAAAGGATAGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAACAGAAATCACAGCAACAACAACAAATGAACAGAAAGGATAGAA  1047

seq1  AGCAGATACTCAAAGATGGAGAAAAAGATACTCCCGAGAGGCTTCCGTGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATACTCAAAGATGGAGAAAAAGATACTCCCGAGAGGCTTCCGTGG  1097

seq1  AATTC  1093
      |||||
seq2  AATTC  1102

seq1: chr2_129398851_129400011
seq2: B6Ng01-256O12.g_67_1219

seq1  GAATTCCTAGAGAAGTTTGGTGGCTTACAGCAGCAGATGTAGACAAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGAAGTTTGGTGGCTTACAGCAGCAGATGTAGACAAGAGT  50

seq1  TGATCACTGGGTCTGTCCCATGGAATATTCGGCTTAGCAGAATCCACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTGGGTCTGTCCCATGGAATATTCGGCTTAGCAGAATCCACTGG  100

seq1  TGGCCTCTCCTCCCCCTTGTCCCAGTCAGTCCAGGGCAAAAGGTGCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTCCTCCCCCTTGTCCCAGTCAGTCCAGGGCAAAAGGTGCTAAC  150

seq1  AGCCCCTCCCCCATTTGAGAACATTCAGTATCCCGTTCTAGGTGCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCCCCCATTTGAGAACATTCAGTATCCCGTTCTAGGTGCTTCCT  200

seq1  GGCTCTCCAACACTAGATTCTGCTCTATGCGTGTTCCTTGGGCCCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCAACACTAGATTCTGCTCTATGCGTGTTCCTTGGGCCCCCTTG  250

seq1  GGCGAGCCTCTGAGAAGCCCCTTGGAGCACCTCTTGGGCGAGCCCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCCTCTGAGAAGCCCCTTGGAGCACCTCTTGGGCGAGCCCCTGAG  300

seq1  AAGCCACTTGGAGCACCATTTTGCAGGTAAGCAAACTGAGGCACGCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTTGGAGCACCATTTTGCAGGTAAGCAAACTGAGGCACGCTGGT  350

seq1  ACTTGGGATTACACAGGTAGAAAGTGATGGAGACAAACTTTGAATGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGATTACACAGGTAGAAAGTGATGGAGACAAACTTTGAATGTGGT  400

seq1  CTGAGCCCTTGAGCCTTTTCCCTGAAAAGCAGCCTAGTGATTAAAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCTTGAGCCTTTTCCCTGAAAAGCAGCCTAGTGATTAAAGGTGA  450

seq1  CACTCTCTGGAGCAGCCTGCAAGGTTCAAAGCTAATCTGGTGCCTCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTGGAGCAGCCTGCAAGGTTCAAAGCTAATCTGGTGCCTCTTCA  500

seq1  GTTTCCTCCTCCAGAAAAAAAGAAGCTTAGACCCTGGAGAAGCCACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCTCCAGAAAAAAAGAAGCTTAGACCCTGGAGAAGCCACCACA  550

seq1  GGGATTAGAGAGGAGCTGTGGGCATCCACCTTCACTGAAAGCTTGCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAGAGAGGAGCTGTGGGCATCCACCTTCACTGAAAGCTTGCCCTA  600

seq1  ATTACCCCACAGACCCCTCCTCTTGGCCCAGGGCACCTCTGCCCACTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCCACAGACCCCTCCTCTTGGCCCAGGGCACCTCTGCCCACTGAC  650

seq1  TCTGCTTCTCTGGCTCCCTTACTTTTTTTTTTTCTTGTTGCCGTCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTCTGGCTCCCTTACTTTTTTTTTTTCTTGTTGCCGTCTCTTC  700

seq1  TGGAACATATGTCTTGCTTTGAAAATCCTCTCTTTGCCAATTTCTCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATATGTCTTGCTTTGAAAATCCTCTCTTTGCCAATTTCTCCCCC  750

seq1  TTTCACGCTCCCATCTGGGTCCTAAACCCTAGCTCTGCATTTACCTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGCTCCCATCTGGGTCCTAAACCCTAGCTCTGCATTTACCTGATG  800

seq1  CATAAACCCAAGCTAAGCCCAGGCTGGCCATTTCTACCCTTGCCCTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCCAAGCTAAGCCCAGGCTGGCCATTTCTACCCTTGCCCTCTTA  850

seq1  AAATTTC-TCCTGGAGAACTCCCTAAGTGCTGTCACTTGAGAGTTGAATT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTCCTGGAGAACTCCCTAAGTGCTGTCACTTGAGAGTTGAATT  900

seq1  CTATAGGTGAGGGCGTGGTCAGGGAATCTGCATTTTAAACCATGCCTTCC  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTATAGGTGAGGGCGTGGTCA-GGAATCTGCATTTTAAACCATGCCTTCC  949

seq1  TATGGGAGAGGGGCTGGCTCTTGGATTGTACTCTGTGAAGCACCCATCAC  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGA-GGGCTGGCTCTTGGATTGTACTCTGTGAAGCACCCATCAC  998

seq1  -TCTCAGTTTCCTCCTCTGTAAGGGGAGGGGGCAGAACCTCCCTCCCAAG  1048
       ||||||||| || |||||||  |||||||||||||| || ||| |||||
seq2  TTCTCAGTTTTCT-CTCTGTA--GGGAGGGGGCAGAATCTTCCT-CCAAG  1044

seq1  GTTGCAAAAGTGAAATG-ATTTATCTGCAAACAAACATATCTTTTGTCCT  1097
      ||||| ||||||||||| ||||||||   ||| | ||| || ||||| ||
seq2  GTTGCCAAAGTGAAATGAATTTATCTTGCAACCACCAT-TCCTTTGTTCT  1093

seq1  GTCTTAGTTTTTGTATAATTGCTTTTGTC-TGTCCTTCCCGGTTGACTTT  1146
      ||| |||||||  |   ||  | || ||| ||  |||  |||||||||| 
seq2  GTCCTAGTTTTGAT---ATGCCATTGGTCTTGCACTT--CGGTTGACTTC  1138

seq1  CTATTCATTTTTTTA  1161
      |||||||||||||||
seq2  CTATTCATTTTTTTA  1153