BAC Information

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BAC

Clone NameB6Ng01-256P13
Chromosome2 (Build37)
Map Location 143,559,752 - 143,685,547
singlet/doubletdoublet
Overlap genePcsk2, Bfsp1, LOC100043799
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneLOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256P13.bB6Ng01-256P13.g
ACCGA062794GA062795
length1,1441,137
definitionB6Ng01-256P13.b B6Ng01-256P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,684,401 - 143,685,547)(143,559,752 - 143,560,883)
sequence
gaattcttaccatgaattttatataatgaaatcacttctctttactatat
ctggatgggtcttcctagcatgaaaattacccatgagacaatgctgctgt
gctcattaccaaacatggtgttaagctacagagagtcctagatggttcta
gtgagaaaaggccgtgagaaaattagatttttgttagcaatgttattctc
aaagataattacctattgacaaaacaagctctggctctattagagccaca
caaagaagaatgactgcaaatgacctcttggtgtgaaatgtaaaagtagt
ttagagacgctcaccctacagcaagctgctcagcccacttggaactggca
ggcagtgttgcttggctttggttgtccttccagccctttaagtctgagaa
cacagaggttacacatagcaccttccatggctggcagtacttcactctga
ctcatgggccaagatgaactggccacagaaagttgtgctgtgtgggttgg
gctcagtgttaattagaattggtttctgctgtgagtgacagaagcaccag
agtgacatgggcccactctgtgtccctgaggatggatagagacagagatc
aagtgtttgtaaggatgggttgccctgggcctccccggtaggaaggtgaa
gccacagagttgctgtagagaggacttgccccagaagctaaacacagtat
tatctgtaacacagcatttctttctcggcatccattggaaatacttgaag
tctggctctggaaaaggatagctttgcatccatgctcacaaaagcaccat
tcacaataaccaaaaatgtctacgcaaatgtagtatatacataaaataga
ccatcattcagctttaaaaaggaaagaaggagcagccctgagcctccttc
tttcaaaggtcattgggtcgcagaaatcccctagcttggataactaatgc
acgtgctagctgccctacgtgctagcttgcttgacaacacactttggtgc
tgttgaggatgcccatcatcctttccttactcctgcctcatgctcctgaa
gtcctttctcaaataagctactactgctttccgcaagattccaactagag
aactgggagaaagaactcagttctctgtctgagccgtcaccacg
gaattccttccaagacgtgcttggagctgtgtctcctagttgactgcaaa
aacaatcaagttgataagattaaccattgcagaggcttttctacagaaag
gggagggggaacaccaacagagagctgcccccaggcggatgctcttctat
tgggttgtaggagtggttcagggttcactcgtcatggggtatttcacaag
acattttcccttctcctccataggccttctagcaaaaggagaaacgcaat
ggctggttcctctttgaggaaatcatggcatcttgctgcacttagtaggc
attgcctctgtgctgaggatgagattccgggtccttcacacactgttgac
agggaggacagaggcatggttcagcttttatggaatgggaagaacaggct
ctctcatcatcaccctgaagggcccggtttagtatttgcacttcctttat
tttatttttatttgtaagtgtaccacatgagtacagtgacttcagaggtc
tgaaaagggtatcagatgtccccagaagtggagctgcagatggttctgct
agaggaggtgctaggaacccagcccaggtcccctgcaagagcaggaagta
ctcttacccactctgcatctttccatgccccggtatttatgtttgtaaag
gtcctcggggtgcttttcctgaagttttgattataagccgagctttttta
ttttattagatattttctttatatacatttcaaaagctatccggaaagtt
ccctataccctccctccaccctgctcccctacccacccattcccactttt
tggccctggcattcccctgtactggggcatataaagtttgcaagtccaat
gggcctctctttccagtgatggccgactaggccatcttttgatacatatg
cagctagagtcaagagctcctgggtactgggtagttcaatattgtttgtt
cacttattagggttgcagacccctttcagctcccttgggtgctttctcta
gcttttccattgggggctgtattccatcttatagatgactggtgagcatc
cacttctggtattgcccaggcaacttggccatagctcatatgagaacagg
ctatacaggttcctcagcaaatatttctgccatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143684401_143685547
seq2: B6Ng01-256P13.b_49_1192 (reverse)

seq1  CGTGGTGACGGCTCAGCCACGAGGACCTGAG-TCTTTCTCCCATTTCTCT  49
      |||||||||||||||| || || || ||||| ||||||||||| ||||| 
seq2  CGTGGTGACGGCTCAGACA-GA-GAACTGAGTTCTTTCTCCCAGTTCTC-  47

seq1  TAGTTTGGAATCTTTCCGAAGCCAGGTAGGTAGCTTATTTGAGAAAGGAC  99
      ||| |||||||||| | |||  || ||| |||||||||||||||||||||
seq2  TAG-TTGGAATCTTGCGGAAAGCA-GTA-GTAGCTTATTTGAGAAAGGAC  94

seq1  TTCAAGGAGCATGGAGCAGGGAGTAAGG-AAGGATGATGGGCATCCTCAA  148
      ||| |||||||||  ||| ||||||||| |||||||||||||||||||||
seq2  TTC-AGGAGCATGAGGCA-GGAGTAAGGAAAGGATGATGGGCATCCTCAA  142

seq1  CAGCACC-AAGTGTGTTGTCAAGCAAGCTAGCACCGTA-GGCAGCTAGCA  196
      ||||||| ||||||||||||||||||||||||| |||| |||||||||||
seq2  CAGCACCAAAGTGTGTTGTCAAGCAAGCTAGCA-CGTAGGGCAGCTAGCA  191

seq1  CGTGCATTAGTTATCCAAGCTAGGGGATTTCTGCGA-CCAATGACCTTTG  245
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGTGCATTAGTTATCCAAGCTAGGGGATTTCTGCGACCCAATGACCTTTG  241

seq1  AAAGAAGGAGGCTCAGGGCTGCTCCTTCTTTCCTTTTTAAAGCTGAATGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAGGCTCAGGGCTGCTCCTTCTTTCCTTTTTAAAGCTGAATGA  291

seq1  TGGTCTATTTTATGTATATACTACATTTGCGTAGACATTTTTGGTTATTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATTTTATGTATATACTACATTTGCGTAGACATTTTTGGTTATTG  341

seq1  TGAATGGTGCTTTTGTGAGCATGGATGC-AAGCTATCCTTTTCCAGAGCC  394
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAATGGTGCTTTTGTGAGCATGGATGCAAAGCTATCCTTTTCCAGAGCC  391

seq1  AGACTTCAAGTATTTCCAATGGATGCCGAGAAAGAAATGCTGTGTTACAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAGTATTTCCAATGGATGCCGAGAAAGAAATGCTGTGTTACAG  441

seq1  ATAATACTGTGTTTAGCTTCTGGGGCAAGTCCTCTCTACAGCAACTCTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTGTGTTTAGCTTCTGGGGCAAGTCCTCTCTACAGCAACTCTGT  491

seq1  GGCTTCACCTTCCTACCGGGGAGGCCCAGGGCAACCCATCCTTACAAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACCTTCCTACCGGGGAGGCCCAGGGCAACCCATCCTTACAAACA  541

seq1  CTTGATCTCTGTCTCTATCCATCCTCAGGGACACAGAGTGGGCCCATGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTCTGTCTCTATCCATCCTCAGGGACACAGAGTGGGCCCATGTC  591

seq1  ACTCTGGTGCTTCTGTCACTCACAGCAGAAACCAATTCTAATTAACACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTGCTTCTGTCACTCACAGCAGAAACCAATTCTAATTAACACTG  641

seq1  AGCCCAACCCACACAGCACAACTTTCTGTGGCCAGTTCATCTTGGCCCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAACCCACACAGCACAACTTTCTGTGGCCAGTTCATCTTGGCCCAT  691

seq1  GAGTCAGAGTGAAGTACTGCCAGCCATGGAAGGTGCTATGTGTAACCTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGTGAAGTACTGCCAGCCATGGAAGGTGCTATGTGTAACCTCT  741

seq1  GTGTTCTCAGACTTAAAGGGCTGGAAGGACAACCAAAGCCAAGCAACACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAGACTTAAAGGGCTGGAAGGACAACCAAAGCCAAGCAACACT  791

seq1  GCCTGCCAGTTCCAAGTGGGCTGAGCAGCTTGCTGTAGGGTGAGCGTCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAGTTCCAAGTGGGCTGAGCAGCTTGCTGTAGGGTGAGCGTCTC  841

seq1  TAAACTACTTTTACATTTCACACCAAGAGGTCATTTGCAGTCATTCTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACTTTTACATTTCACACCAAGAGGTCATTTGCAGTCATTCTTCT  891

seq1  TTGTGTGGCTCTAATAGAGCCAGAGCTTGTTTTGTCAATAGGTAATTATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGCTCTAATAGAGCCAGAGCTTGTTTTGTCAATAGGTAATTATC  941

seq1  TTTGAGAATAACATTGCTAACAAAAATCTAATTTTCTCACGGCCTTTTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATAACATTGCTAACAAAAATCTAATTTTCTCACGGCCTTTTCT  991

seq1  CACTAGAACCATCTAGGACTCTCTGTAGCTTAACACCATGTTTGGTAATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAACCATCTAGGACTCTCTGTAGCTTAACACCATGTTTGGTAATG  1041

seq1  AGCACAGCAGCATTGTCTCATGGGTAATTTTCATGCTAGGAAGACCCATC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCAGCATTGTCTCATGGGTAATTTTCATGCTAGGAAGACCCATC  1091

seq1  CAGATATAGTAAAGAGAAGTGATTTCATTATATAAAATTCATGGTAAGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATAGTAAAGAGAAGTGATTTCATTATATAAAATTCATGGTAAGAA  1141

seq1  TTC  1147
      |||
seq2  TTC  1144

seq1: chr2_143559752_143560883
seq2: B6Ng01-256P13.g_67_1203

seq1  GAATTCCTTCCAAGACGTGCTTGGAGCTGTGTCTCCTAGTTGACTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCAAGACGTGCTTGGAGCTGTGTCTCCTAGTTGACTGCAAA  50

seq1  AACAATCAAGTTGATAAGATTAACCATTGCAGAGGCTTTTCTACAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAAGTTGATAAGATTAACCATTGCAGAGGCTTTTCTACAGAAAG  100

seq1  GGGAGGGGGAACACCAACAGAGAGCTGCCCCCAGGCGGATGCTCTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGAACACCAACAGAGAGCTGCCCCCAGGCGGATGCTCTTCTAT  150

seq1  TGGGTTGTAGGAGTGGTTCAGGGTTCACTCGTCATGGGGTATTTCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTAGGAGTGGTTCAGGGTTCACTCGTCATGGGGTATTTCACAAG  200

seq1  ACATTTTCCCTTCTCCTCCATAGGCCTTCTAGCAAAAGGAGAAACGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCCTTCTCCTCCATAGGCCTTCTAGCAAAAGGAGAAACGCAAT  250

seq1  GGCTGGTTCCTCTTTGAGGAAATCATGGCATCTTGCTGCACTTAGTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTCCTCTTTGAGGAAATCATGGCATCTTGCTGCACTTAGTAGGC  300

seq1  ATTGCCTCTGTGCTGAGGATGAGATTCCGGGTCCTTCACACACTGTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCTGTGCTGAGGATGAGATTCCGGGTCCTTCACACACTGTTGAC  350

seq1  AGGGAGGACAGAGGCATGGTTCAGCTTTTATGGAATGGGAAGAACAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGACAGAGGCATGGTTCAGCTTTTATGGAATGGGAAGAACAGGCT  400

seq1  CTCTCATCATCACCCTGAAGGGCCCGGTTTAGTATTTGCACTTCCTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCATCACCCTGAAGGGCCCGGTTTAGTATTTGCACTTCCTTTAT  450

seq1  TTTATTTTTATTTGTAAGTGTACCACATGAGTACAGTGACTTCAGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATTTGTAAGTGTACCACATGAGTACAGTGACTTCAGAGGTC  500

seq1  TGAAAAGGGTATCAGATGTCCCCAGAAGTGGAGCTGCAGATGGTTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGGTATCAGATGTCCCCAGAAGTGGAGCTGCAGATGGTTCTGCT  550

seq1  AGAGGAGGTGCTAGGAACCCAGCCCAGGTCCCCTGCAAGAGCAGGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGTGCTAGGAACCCAGCCCAGGTCCCCTGCAAGAGCAGGAAGTA  600

seq1  CTCTTACCCACTCTGCATCTTTCCATGCCCCGGTATTTATGTTTGTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCCACTCTGCATCTTTCCATGCCCCGGTATTTATGTTTGTAAAG  650

seq1  GTCCTCGGGGTGCTTTTCCTGAAGTTTTGATTATAAGCCGAGCTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGGGTGCTTTTCCTGAAGTTTTGATTATAAGCCGAGCTTTTTTA  700

seq1  TTTTATTAGATATTTTCTTTATATACATTTCAAAAGCTATCCGGAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGATATTTTCTTTATATACATTTCAAAAGCTATCCGGAAAGTT  750

seq1  CCCTATACCCTCCCTCCACCCTGCTCCCCTACCCACCCATTCCCACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATACCCTCCCTCCACCCTGCTCCCCTACCCACCCATTCCCACTTTT  800

seq1  TGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  850

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  900

seq1  CAGCTAGAGTCAAGAGCTCCGGGGTACTGGGTAGTTC-ATATTGTTGTTT  949
      |||||||||||||||||||| |||||||||||||||| ||||||||  ||
seq2  CAGCTAGAGTCAAGAGCTCCTGGGTACTGGGTAGTTCAATATTGTTTGTT  950

seq1  CACTTA-TAGGGTTGCAGACCCC-TTCAGCT-CCTTGGGTGCTTTCTCTA  996
      |||||| |||||||||||||||| ||||||| ||||||||||||||||||
seq2  CACTTATTAGGGTTGCAGACCCCTTTCAGCTCCCTTGGGTGCTTTCTCTA  1000

seq1  GCTTTTCCATTGGGGGCCTGTATTCCATCTTATAGATGACT-GTGAGCAT  1045
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  GCTTTTCCATTGGGGG-CTGTATTCCATCTTATAGATGACTGGTGAGCAT  1049

seq1  CCACTTCT-GTATTTGCCAGGC-ACT--GGCATAGCCTCATATGAG-ACA  1090
      |||||||| |||||  |||||| |||  | ||||| |||||||||| |||
seq2  CCACTTCTGGTATTGCCCAGGCAACTTGGCCATAG-CTCATATGAGAACA  1098

seq1  -GCTATAACAGGGTTCCTTCAGCAAAATATTTCTGGCATATGC  1132
       ||||| ||| |||||| ||||| ||||||||||| |||||||
seq2  GGCTAT-ACA-GGTTCC-TCAGC-AAATATTTCTGCCATATGC  1137