BAC Information

Click to search

BAC

Clone NameB6Ng01-257C13
Chromosome2 (Build37)
Map Location 14,056,341 - 14,089,396
singlet/doubletdoublet
Overlap geneStam
Upstream geneRsu1, Cubn, Trdmt1, Vim, St8sia6, Ptpla
Downstream gene2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257C13.bB6Ng01-257C13.g
ACCGA062928GA062929
length1,234614
definitionB6Ng01-257C13.b B6Ng01-257C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,088,161 - 14,089,396)(14,056,341 - 14,056,954)
sequence
gaattctcagttccttctccagcaccatgcctgcctgcatgctgcatgtt
tctagccataataatacagactaaacctctgaacctgaaagccagcccca
aataaatgctttcatttataatagttcgctgtgatcatggtgtttcttca
cagcaataacaatcctaactaagacaaacagattatctcaattaagctta
atgaggtaggaaaacctgcctattatgtaccatgccatccagggtgccag
actcaatatgatgagaaagccagctgaccatagcagtcatttctctctgc
ttcctgattgtgaatggaatgtgacagctgtctcaagttcctgccaccat
agctttatatctgtggtggccaatatcctcaaattgtgagccaaaagaaa
ccctttccctcttaagctgtttcaaccaacgtgtttatcacagcaacaaa
gaaattagctaagacaacaagtatgtgagtaactgagcatagtccagata
cagagggaacagaagagtcagtaaaaggatgatgttaatccagagagtga
taagaagtaagaggaccaagaaacacccactcaagtgctgcctcaactgc
tcatatgaacccttacaaaagggactcactgttctttacacgtttgttca
catgtacatgtgcacatcgtatacacacacacacacacactgctcactat
gagcattaagaaaaagaagcaaaacttaaatgtaatggataaagaacctt
cagaactgacacatgcgaaaggctgatgtttcataagaaaacacaacatt
gaaaaaacgtgtagaagtgcaaggccattctctgaggtaggtctggacct
cgactgctcttcctcctgacttagagcaggctctgcttagtgctgcagag
ttatctttgcctgagggaatggaaaggcatctcctttgaaatgcctttgt
tgtaagactgtcggggaggccaacagagctgagaggagatagaagcagta
aggtgcagacactggttaactcttgggaacacacctcatctttgctttaa
atgtgtagttttaaaatattcatataaatttaaaattagaaagatatcat
caactaaataccaattgggtctgggaatggggggaagagcaggtattcaa
gggagaataataataaataaaccttccatagcatgccattatcctatggt
tcataatcctaaaacttagaagaatatattttag
gaattcctgtctagtatgttatagattggatttatattgctccatttaag
tattaggcacctaggcagtttctaattttaattgctatcataaagagttt
tataatgaggatttttgtttgttttctttttaacgtttagtttaattttc
ttagcttagatatccaggaatggaacttccaaattaaaggatctaggtgt
ttttcatgttaataactactgtgaaattgttgagcagatgggagatttta
tagttttattggtgctctgtgaaaatgcatgtttttccatgtactcaata
gctattaaattatattcacacctattaatagtgttgttttgaatagcagt
atcaatattgtattgaattggtaaaacaaaatattaatccactaaaattt
actttacagtaaagtattaaatgatggaattagcaagccatacaggatac
tgttcccagcaggccaaatttgaagtaccactacattcgtttatatattt
ttctagctgcctttgtgcttaagtaaccaaagagattgggtagtcctctg
cttaatttctggcgcctggtatagaccagtgtataacactcttttcagga
cttcatttcttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_14088161_14089396
seq2: B6Ng01-257C13.b_46_1279 (reverse)

seq1  CTAAAAT-TA-TCTTCTAAATTTTTAGATTTATGAACCATTTAGATAATG  48
      ||||||| || |||||| || ||||||  |||||||||| |  |||||||
seq2  CTAAAATATATTCTTCT-AAGTTTTAGGATTATGAACCA-TAGGATAATG  48

seq1  GCAATACTAATGAAAAGGTTTA-TTATTATTA-TCTCCCTCGAATA-CTG  95
      || || |||  |  |||||||| ||||||||| ||||||| ||||| |||
seq2  GC-ATGCTATGG--AAGGTTTATTTATTATTATTCTCCCTTGAATACCTG  95

seq1  CTC-TCCCCCATTTCCCAGACACAA-TGGTATTAGTTTGATGAATATCTT  143
      ||| ||||||  ||||||||| ||| |||||||   |||||| |||||||
seq2  CTCTTCCCCCCATTCCCAGACCCAATTGGTATTTAGTTGATG-ATATCTT  144

seq1  TCTAAATTTTAAATTTATATGAATA-TCTAAAACTACAACAATTTAAAGC  192
      ||| ||||||||||||||||||||| | ||||||||||   |||||||||
seq2  TCT-AATTTTAAATTTATATGAATATTTTAAAACTACA--CATTTAAAGC  191

seq1  AAAGATGAGGTTGTGTTCCCAAGAGTTAACCAGTGTCTGCACCTTACTGC  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGG-TGTGTTCCCAAGAGTTAACCAGTGTCTGCACCTTACTGC  240

seq1  TTCTATCTCCTCTCAGCTCTGTTGGCCTCCCCGACAGTCTTACAACAAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCCTCTCAGCTCTGTTGGCCTCCCCGACAGTCTTACAACAAAG  290

seq1  GCATTTCAAAGGAGATGCCTTTCCATTCCCTCAGGCAAAGATAACTCTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAAAGGAGATGCCTTTCCATTCCCTCAGGCAAAGATAACTCTGC  340

seq1  AGCACTAAGCAGAGCCTGCTCTAAGTCAGGAGGAAGAGCAGTCGAGGTCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAAGCAGAGCCTGCTCTAAGTCAGGAGGAAGAGCAGTCGAGGTCC  390

seq1  AGACCTACCTCAGAGAATGGCCTTGCACTTCTACACGTTTTTTCAATGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTACCTCAGAGAATGGCCTTGCACTTCTACACGTTTTTTCAATGTT  440

seq1  GTGTTTTCTTATGAAACATCAGCCTTTCGCATGTGTCAGTTCTGAAGGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTTATGAAACATCAGCCTTTCGCATGTGTCAGTTCTGAAGGTT  490

seq1  CTTTATCCATTACATTTAAGTTTTGCTTCTTTTTCTTAATGCTCATAGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCATTACATTTAAGTTTTGCTTCTTTTTCTTAATGCTCATAGTG  540

seq1  AGCAGTGTGTGTGTGTGTGTGTATACGATGTGCACATGTACATGTGAACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGTGTGTGTGTGTGTATACGATGTGCACATGTACATGTGAACA  590

seq1  AACGTGTAAAGAACAGTGAGTCCCTTTTGTAAGGGTTCATATGAGCAGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTAAAGAACAGTGAGTCCCTTTTGTAAGGGTTCATATGAGCAGTT  640

seq1  GAGGCAGCACTTGAGTGGGTGTTTCTTGGTCCTCTTACTTCTTATCACTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCACTTGAGTGGGTGTTTCTTGGTCCTCTTACTTCTTATCACTC  690

seq1  TCTGGATTAACATCATCCTTTTACTGACTCTTCTGTTCCCTCTGTATCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTAACATCATCCTTTTACTGACTCTTCTGTTCCCTCTGTATCTG  740

seq1  GACTATGCTCAGTTACTCACATACTTGTTGTCTTAGCTAATTTCTTTGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGCTCAGTTACTCACATACTTGTTGTCTTAGCTAATTTCTTTGTT  790

seq1  GCTGTGATAAACACGTTGGTTGAAACAGCTTAAGAGGGAAAGGGTTTCTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATAAACACGTTGGTTGAAACAGCTTAAGAGGGAAAGGGTTTCTT  840

seq1  TTGGCTCACAATTTGAGGATATTGGCCACCACAGATATAAAGCTATGGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCACAATTTGAGGATATTGGCCACCACAGATATAAAGCTATGGTG  890

seq1  GCAGGAACTTGAGACAGCTGTCACATTCCATTCACAATCAGGAAGCAGAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACTTGAGACAGCTGTCACATTCCATTCACAATCAGGAAGCAGAG  940

seq1  AGAAATGACTGCTATGGTCAGCTGGCTTTCTCATCATATTGAGTCTGGCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGACTGCTATGGTCAGCTGGCTTTCTCATCATATTGAGTCTGGCA  990

seq1  CCCTGGATGGCATGGTACATAATAGGCAGGTTTTCCTACCTCATTAAGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGGCATGGTACATAATAGGCAGGTTTTCCTACCTCATTAAGCT  1040

seq1  TAATTGAGATAATCTGTTTGTCTTAGTTAGGATTGTTATTGCTGTGAAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGATAATCTGTTTGTCTTAGTTAGGATTGTTATTGCTGTGAAGA  1090

seq1  AACACCATGATCACAGCGAACTATTATAAATGAAAGCATTTATTTGGGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATGATCACAGCGAACTATTATAAATGAAAGCATTTATTTGGGGC  1140

seq1  TGGCTTTCAGGTTCAGAGGTTTAGTCTGTATTATTATGGCTAGAAACATG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCAGGTTCAGAGGTTTAGTCTGTATTATTATGGCTAGAAACATG  1190

seq1  CAGCATGCAGGCAGGCATGGTGCTGGAGAAGGAACTGAGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCAGGCAGGCATGGTGCTGGAGAAGGAACTGAGAATTC  1234

seq1: chr2_14056341_14056954
seq2: B6Ng01-257C13.g_68_681

seq1  GAATTCCTGTCTAGTATGTTATAGATTGGATTTATATTGCTCCATTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTAGTATGTTATAGATTGGATTTATATTGCTCCATTTAAG  50

seq1  TATTAGGCACCTAGGCAGTTTCTAATTTTAATTGCTATCATAAAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGCACCTAGGCAGTTTCTAATTTTAATTGCTATCATAAAGAGTTT  100

seq1  TATAATGAGGATTTTTGTTTGTTTTCTTTTTAACGTTTAGTTTAATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAGGATTTTTGTTTGTTTTCTTTTTAACGTTTAGTTTAATTTTC  150

seq1  TTAGCTTAGATATCCAGGAATGGAACTTCCAAATTAAAGGATCTAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTAGATATCCAGGAATGGAACTTCCAAATTAAAGGATCTAGGTGT  200

seq1  TTTTCATGTTAATAACTACTGTGAAATTGTTGAGCAGATGGGAGATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTTAATAACTACTGTGAAATTGTTGAGCAGATGGGAGATTTTA  250

seq1  TAGTTTTATTGGTGCTCTGTGAAAATGCATGTTTTTCCATGTACTCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATTGGTGCTCTGTGAAAATGCATGTTTTTCCATGTACTCAATA  300

seq1  GCTATTAAATTATATTCACACCTATTAATAGTGTTGTTTTGAATAGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAATTATATTCACACCTATTAATAGTGTTGTTTTGAATAGCAGT  350

seq1  ATCAATATTGTATTGAATTGGTAAAACAAAATATTAATCCACTAAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATTGTATTGAATTGGTAAAACAAAATATTAATCCACTAAAATTT  400

seq1  ACTTTACAGTAAAGTATTAAATGATGGAATTAGCAAGCCATACAGGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAGTAAAGTATTAAATGATGGAATTAGCAAGCCATACAGGATAC  450

seq1  TGTTCCCAGCAGGCCAAATTTGAAGTACCACTACATTCGTTTATATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGCAGGCCAAATTTGAAGTACCACTACATTCGTTTATATATTT  500

seq1  TTCTAGCTGCCTTTGTGCTTAAGTAACCAAAGAGATTGGGTAGTCCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTGCCTTTGTGCTTAAGTAACCAAAGAGATTGGGTAGTCCTCTG  550

seq1  CTTAATTTCTGGCGCCTGGTATAGACCAGTGTATAACACTCTTTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTCTGGCGCCTGGTATAGACCAGTGTATAACACTCTTTTCAGGA  600

seq1  CTTCATTTCTTGTA  614
      ||||||||||||||
seq2  CTTCATTTCTTGTA  614