BAC Information

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BAC

Clone NameB6Ng01-258C04
Chromosome2 (Build37)
Map Location 77,931,126 - 78,087,804
singlet/doubletdoublet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258C04.bB6Ng01-258C04.g
ACCGA063653GA063654
length1,1531,109
definitionB6Ng01-258C04.b B6Ng01-258C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,931,126 - 77,932,294)(78,086,699 - 78,087,804)
sequence
gaattctttagttctacaaatggtgagcagtgacttttgttagattgtaa
atattgggtctgtttccctagtattgatagcaaataagactaaacataca
tttcctcaagcaattatcacttctttatgatgaaaacataaactgtcctt
tcctctaactttaaaaatatggttcatatcatcattgatgggcagccaat
tgctttaaaagcccttcctttttgcatctaattatagctcactaatcact
ataagtgtttccctgaacaccatcccccctttcttctctcttgggattct
actcttaagttctttgggatccacataagtgacattgtattgtatttgtt
ttcctactgttggcttatttcacataacacaatgatctccagttttattc
attctatcacaaatgacaggattgttatcattttacgaccaaataacagt
ccagtgtgtgtagcacattatttttaatccacttcatttaggtatttctt
acgtttttttcttggctattgagagagacagatttacaacaaacaagggc
ctgtaggtgtctctttgacagatgaattccatattttttgggtgtacatc
ctagtagtgagattgctggaatatatcataatttaattttaagattgtga
ggagcctcaattctattttccacaacagctacattaatgtatatgactgc
caaggatacagatcttcttatgaaggctctattgaacactcaccagtatg
cacaagaaaggtcttattttagagaatagttcatagtggacttgaaaggg
atactattttagcatccagtctggcaatcagttattttttccttttaaaa
aaagcccttaactctatggctcttggtaagttacttaagcaatttgaaat
tcctttagtgggtaaaatgatattaaagttgtaggcctgttgcaaagatt
aaatatacacctaataaatccctctaaaatattgtagttccccattaaag
ttccagtttccgattagagtgcagaaatgtgctttcaggactggaaacaa
agaatagagaaacactggagtaacagcttatagcaatagaataacagctg
atctttctgtgtagttatacaatacttgattataaatacttcccaagagg
gat

gaattcttcacacgcacagggtgagacacaatggatcaacaggaagaaat
gaaaaaccatggacatggaaaaccaaaagcaaataaaaagagaattttct
agttatagattggcaagaaatgattcccaggaagtcatcatgttaacact
gtactgtgagatttataagcgatgagagccagatgtaacaatagcaaaaa
cagacgaaaggaatttccaacaggcttggaaattcactgttaggaaaccc
caaagctgactgtgacacccacacccagacacaaatggtggccgggaaag
gcaaatgccattgggaagtgacagaaacttcagagccatccaatagattc
agttacccgaaggaaacgaatccatgagccgtgtatcagaaacaagactc
ttaatggaagacacacagccaagagcatgctagctagaactccatgtagc
cactgaggtgcagctctttgtgaacttaggggaaactggcatggaaaacc
aggatgagagatttccagaatccatcgggggaagcttggagctctcagcc
accatggcagctctcaggccaggcaaggacaagttagtgttagaaggttt
gaagcttgaaagaagagtgatgaggaagagcctttacacattcacaggtg
aattcaggtgtccagcaaacttcattaagaacgtagtaaaggaaacaggc
atattcttgtcttcatggagcttatacctaaagaaaaggaaatgtgtagt
gaatgtgtaaatgcacacaaacattctaaaatcagagactgatgtaagta
ccatgaagtcaaattaaaaaatgtaacagaaagtgccttttactagacaa
catggcctggcatagtcagagaaaatgagtgtgggatgattaagaaggag
ccttcctatactgtttgaagaaatgataactcaaaatgttagtgttggag
gtcgacaagggtgtctggagcctagacacctgaccagactgcagctcagg
caaaggcagatggtgaagggctcaggatccctgccacacagcaaacatac
tgtaatgcaagacagaaggcttaggtgctgagaaggtggccaataaattt
ggcacagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_77931126_77932294
seq2: B6Ng01-258C04.b_48_1200

seq1  GAATTCTTTAGTTCTACAAATGGTGAGCAGTGACTTTTGTTAGATTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTTCTACAAATGGTGAGCAGTGACTTTTGTTAGATTGTAA  50

seq1  ATATTGGGTCTGTTTCCCTAGTATTGATAGCAAATAAGACTAAACATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGGTCTGTTTCCCTAGTATTGATAGCAAATAAGACTAAACATACA  100

seq1  TTTCCTCAAGCAATTATCACTTCTTTATGATGAAAACATAAACTGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAAGCAATTATCACTTCTTTATGATGAAAACATAAACTGTCCTT  150

seq1  TCCTCTAACTTTAAAAATATGGTTCATATCATCATTGATGGGCAGCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAACTTTAAAAATATGGTTCATATCATCATTGATGGGCAGCCAAT  200

seq1  TGCTTTAAAAGCCCTTCCTTTTTGCATCTAATTATAGCTCACTAATCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAAGCCCTTCCTTTTTGCATCTAATTATAGCTCACTAATCACT  250

seq1  ATAAGTGTTTCCCTGAACACCATCCCCCCTTTCTTCTCTCTTGGGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTTTCCCTGAACACCATCCCCCCTTTCTTCTCTCTTGGGATTCT  300

seq1  ACTCTTAAGTTCTTTGGGATCCACATAAGTGACATTGTATTGTATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAAGTTCTTTGGGATCCACATAAGTGACATTGTATTGTATTTGTT  350

seq1  TTCCTACTGTTGGCTTATTTCACATAACACAATGATCTCCAGTTTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGTTGGCTTATTTCACATAACACAATGATCTCCAGTTTTATTC  400

seq1  ATTCTATCACAAATGACAGGATTGTTATCATTTTACGACCAAATAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCACAAATGACAGGATTGTTATCATTTTACGACCAAATAACAGT  450

seq1  CCAGTGTGTGTAGCACATTATTTTTAATCCACTTCATTTAGGTATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGTGTAGCACATTATTTTTAATCCACTTCATTTAGGTATTTCTT  500

seq1  ACGTTTTTTTCTTGGCTATTGAGAGAGACAGATTTACAACAAACAAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTTTTCTTGGCTATTGAGAGAGACAGATTTACAACAAACAAGGGC  550

seq1  CTGTAGGTGTCTCTTTGACAGATGAATTCCATATTTTTTGGGTGTACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTGTCTCTTTGACAGATGAATTCCATATTTTTTGGGTGTACATC  600

seq1  CTAGTAGTGAGATTGCTGGAATATATCATAATTTAATTTTAAGATTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGTGAGATTGCTGGAATATATCATAATTTAATTTTAAGATTGTGA  650

seq1  GGAGCCTCAATTCTATTTTCCACAACAGCTACATTAATGTATATGACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCAATTCTATTTTCCACAACAGCTACATTAATGTATATGACTGC  700

seq1  CAAGGATACAGATCTTCTTATGAAGGCTCTATTGAACACTCACCAGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATACAGATCTTCTTATGAAGGCTCTATTGAACACTCACCAGTATG  750

seq1  CACAAGAAAGGTCTTATTTTAGAGAATAGTTCATAGTGGACTTGAAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAGGTCTTATTTTAGAGAATAGTTCATAGTGGACTTGAAAGGG  800

seq1  ATACTATTTTAGCATCCAGTCTGGCAATCAGTTATTTTTTCCTTTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTTAGCATCCAGTCTGGCAATCAGTTATTTTTTCCTTTTAAAA  850

seq1  AAAGCCCTTAACTCTATGGCTCTTGGTAAGTTACTTAAGCAATTTGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTAACTCTATGGCTCTTGGTAAGTTACTTAAGCAATTTGAAAT  900

seq1  TCCTTTAGTGGGTAAAATGATATTAAAGTTGTAGGCCTGTTGCAAAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTGGGTAAAATGATATTAAAGTTGTAGGCCTGTTGCAAAGATT  950

seq1  AAATATACAACCTAATAAATCCCTCTAAAAATATTGTAGTTCCCCATTAA  1000
      |||||||| ||||||||||||||||| |||||||||||||||||||||  
seq2  AAATATAC-ACCTAATAAATCCCTCT-AAAATATTGTAGTTCCCCATT--  996

seq1  AAAGTTCCAGTTTCCGATTAAGAGGTGCAGAAATGTGCTTCCAGGGACTG  1050
      ||||||||||||||||||| ||| |||||||||||||||| || ||||| 
seq2  AAAGTTCCAGTTTCCGATT-AGA-GTGCAGAAATGTGCTTTCA-GGACT-  1042

seq1  GGATACAAAGAATTAGAG-AACACTGGAAGTAAACAGCTTTATTAGCAAT  1099
      ||| |||||||| ||||| |||||||| ||| ||||||||   |||||||
seq2  GGAAACAAAGAA-TAGAGAAACACTGG-AGT-AACAGCTT--ATAGCAAT  1087

seq1  AG-ATAACAGCCTTGAATCTTTCTGTGTAGTTATACAATACTTGATTATA  1148
      || ||||||||  || ||||||||||||||||||||||||||||||||| 
seq2  AGAATAACAGC--TG-ATCTTTCTGTGTAGTTATACAATACTTGATTAT-  1133

seq1  AAATACTTTCCCAAGAGGGAT  1169
      |||||| ||||||||||||||
seq2  AAATAC-TTCCCAAGAGGGAT  1153


seq1: chr2_78086699_78087804
seq2: B6Ng01-258C04.g_64_1172 (reverse)

seq1  AACTGTTCCAAATTTA-TGGCCAC--TCTCAGCACTAAAGCCTTCTGTC-  46
      |||||| ||||||||| |||||||  |||||||||  |||||||||||| 
seq2  AACTGTGCCAAATTTATTGGCCACCTTCTCAGCACCTAAGCCTTCTGTCT  50

seq1  TGCATTACAGTAATGTTTGGCTGTGTGGCAGGGATCCTGAGCCCTTCACA  96
      ||||||||||| |||||| |||||||||||||||||||||||||||||| 
seq2  TGCATTACAGT-ATGTTT-GCTGTGTGGCAGGGATCCTGAGCCCTTCACC  98

seq1  TTCTGCCTTTGCCTGGAGCTGCAGTCTGGTCAGGTGTCTAGGCTCCAGAC  146
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTTTGCCT-GAGCTGCAGTCTGGTCAGGTGTCTAGGCTCCAGAC  147

seq1  ACCCTTGTCGACCT-CAACACTAACATTTTGAGTTATCATTTCTTCAAAC  195
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTCGACCTCCAACACTAACATTTTGAGTTATCATTTCTTCAAAC  197

seq1  AGTATAGGAAGGCTCCTTCTTAATCAT-CCACACTCATTTTCTCTGACTA  244
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTATAGGAAGGCTCCTTCTTAATCATCCCACACTCATTTTCTCTGACTA  247

seq1  TGCCAGGCCATGTTGTCTAGTAAAAGGCACTTTCTGTTACATTTTTTAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCCATGTTGTCTAGTAAAAGGCACTTTCTGTTACATTTTTTAAT  297

seq1  TTGACTTCATGGTACTTACATCAGTCTCTGATTTTAGAATGTTTGTGTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCATGGTACTTACATCAGTCTCTGATTTTAGAATGTTTGTGTGC  347

seq1  ATTTACACATTCACTACACATTTCCTTTTCTTTAGGTATAAGCTCCATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACATTCACTACACATTTCCTTTTCTTTAGGTATAAGCTCCATGA  397

seq1  AGACAAGAATATGCCTGTTTCCTTTACTACGTTCTTAATGAAGTTTGCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAATATGCCTGTTTCCTTTACTACGTTCTTAATGAAGTTTGCTG  447

seq1  GACACCTGAATTCACCTGTGAATGTGTAAAGGCTCTTCCTCATCACTCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGAATTCACCTGTGAATGTGTAAAGGCTCTTCCTCATCACTCTT  497

seq1  CTTTCAAGCTTCAAACCTTCTAACACTAACTTGTCCTTGCCTGGCCTGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGCTTCAAACCTTCTAACACTAACTTGTCCTTGCCTGGCCTGAG  547

seq1  AGCTGCCATGGTGGCTGAGAGCTCCAAGCTTCCCCCGATGGATTCTGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATGGTGGCTGAGAGCTCCAAGCTTCCCCCGATGGATTCTGGAA  597

seq1  ATCTCTCATCCTGGTTTTCCATGCCAGTTTCCCCTAAGTTCACAAAGAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATCCTGGTTTTCCATGCCAGTTTCCCCTAAGTTCACAAAGAGC  647

seq1  TGCACCTCAGTGGCTACATGGAGTTCTAGCTAGCATGCTCTTGGCTGTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCAGTGGCTACATGGAGTTCTAGCTAGCATGCTCTTGGCTGTGT  697

seq1  GTCTTCCATTAAGAGTCTTGTTTCTGATACACGGCTCATGGATTCGTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCATTAAGAGTCTTGTTTCTGATACACGGCTCATGGATTCGTTTC  747

seq1  CTTCGGGTAACTGAATCTATTGGATGGCTCTGAAGTTTCTGTCACTTCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGGTAACTGAATCTATTGGATGGCTCTGAAGTTTCTGTCACTTCCC  797

seq1  AATGGCATTTGCCTTTCCCGGCCACCATTTGTGTCTGGGTGTGGGTGTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATTTGCCTTTCCCGGCCACCATTTGTGTCTGGGTGTGGGTGTCA  847

seq1  CAGTCAGCTTTGGGGTTTCCTAACAGTGAATTTCCAAGCCTGTTGGAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCTTTGGGGTTTCCTAACAGTGAATTTCCAAGCCTGTTGGAAAT  897

seq1  TCCTTTCGTCTGTTTTTGCTATTGTTACATCTGGCTCTCATCGCTTATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCGTCTGTTTTTGCTATTGTTACATCTGGCTCTCATCGCTTATAA  947

seq1  ATCTCACAGTACAGTGTTAACATGATGACTTCCTGGGAATCATTTCTTGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACAGTACAGTGTTAACATGATGACTTCCTGGGAATCATTTCTTGC  997

seq1  CAATCTATAACTAGAAAATTCTCTTTTTATTTGCTTTTGGTTTTCCATGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATAACTAGAAAATTCTCTTTTTATTTGCTTTTGGTTTTCCATGT  1047

seq1  CCATGGTTTTTCATTTCTTCCTGTTGATCCATTGTGTCTCACCCTGTGCG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTTTTCATTTCTTCCTGTTGATCCATTGTGTCTCACCCTGTGCG  1097

seq1  TGTGAAGAATTC  1106
      ||||||||||||
seq2  TGTGAAGAATTC  1109


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