BAC Information

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BAC

Clone NameB6Ng01-258C10
Chromosome2 (Build37)
Map Location 113,242,724 - 113,370,207
singlet/doubletdoublet
Overlap geneFmn1
Upstream gene2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3, 4930563P21Rik
Downstream geneGrem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258C10.bB6Ng01-258C10.g
ACCGA063663GA063664
length1,1941,122
definitionB6Ng01-258C10.b B6Ng01-258C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,368,995 - 113,370,207)(113,242,724 - 113,243,858)
sequence
gaattcatgactataattgtgctgactaattctatgtcaacctgacacat
gctaggatcattagagagaaaggtaattcaattgagaaaatgcctctata
agatccagttgcaggcaagtcgatagaacattttttaaattggttatcca
tgtaagagggcacagtcaattgtgggtggggccacaccaggccagtggtc
ctcaaaagacaggctgagcaagccatgaggagcaagctgtaagcagcact
cccccatagcctctgcatcagctcctgccatctgagttcctgtccagtcc
ttcctttagactgtgactaggaaacatatgcctagcaaacatgttccttc
ccaagtctttggtcatggtatttcctcacaacagtagtaaccccaactaa
aacaacagttccgaataacatttcaaaattcagaagagaaagccaaagca
gtaagcccagatttcttaaactaactggatccttttgccattcaagactt
ggattcctttctggggagaggggaccaatcaggcagatgtagtggattgt
gacatgcatatgatgacaaatgatgattgcacagtacctttttgactttg
ttcttcttttcgtaggcctctgacaggggttttttcttctgttgagttgt
gtccttggagaataaatattcaaattcacttgtgtccctaatatgaggct
cttctaaggagtcccataaagttggtgcggcgtcttggcttgaaaaagaa
agcaacaagttaactgtgggaaacaaagcagtaaagagtataatacaaag
aaatctttctctaattcacttttaaaaagaaaacatacaaaaccctggta
aggctgggacaggagtttttcatgttacacattttgaaagtcaaaaacag
gatattttaacgcccatcttcatgtaaacatccaaaaaaaaaaaaaaata
cgatggtcattagttcagtacagagctctggagaaggcccttaggagtag
aattttgaggtgagtttggaccatgtaaattacttctttctcaaccatag
catctccagtagcaaaatgcagtacactgagagaaaacagataagtaatc
atgcatgccagttcatcttagaaactgtattatattcacttattcctagg
tttattgtattgccatgtattgaggagcgaattggcatgccata
gaattcactaataggaaaaataagggtggaaggcctgtttagctgtagac
tgctctaagacttgtgatttctgttgctacttaagaccgtcagactaaaa
agttatcttgccaactatataattattagaaaatgagactatagacatag
gatttccaaatttgtatttttgtgaaaataaaattatttctctttggaaa
gaaaaccttcctgttggccttccaggttatggacaggttaggacattgaa
aacactatcaacattgatttgaatataactatgcatctcccacgtggttt
aggggtgaagaggtacaaagagcctgtcataagacattcatgctcaggat
aatcatgtgaatgaggccttatttaaaaaacacattttttttttccctct
aagatgagggacttaccatcctgactgttggcaaaatacaaagatttgat
tttgttgtgattgaactaagcccttgtagaatatgaagtacaaatcacag
atgaatggtttgtatatactgtttttttagatcttttctagtcgtttctt
cattatctgtggaaaccttgagctcacatttgagtgcagtgcagtgtgtg
tgtgtgtatttgtagaggtcagtggtcagtgttgttgtgtatctttctca
cttgctttctaccctattttgggggactgaatctcactgagcctagaggt
taccaactgggtagcaagtttcaggaaatcacctgttcccacttccctag
aattacaggccgttgtaactggcttttaaaaaacattttgttgtttgatg
tggatactagagatcaaacccagtgtccctttttgagtagcaagcaactt
tccaccatttcacattctcgaggtcatatacatgacagcagtgaagcacc
ttatagaaaaggcaaaccctctgctgcaaagagagcatgaggatggaggg
acaattgtcatccaaaactcacgatactatagcactctctgtgtggagca
gtggaaaacacgatgctttagatcaggcattctttagatatataatatag
aaacataaaaatagtttaaaagcccacaatgtagacaatacagatgtcca
ttgcaacctcttagacagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113368995_113370207
seq2: B6Ng01-258C10.b_46_1239 (reverse)

seq1  TATGGCATGCATATCCGCTCCTCATATACACATGCATATACATATACACA  50
      ||||||||||  || |||||||||   | |||||   ||||| ||| || 
seq2  TATGGCATGCCAATTCGCTCCTCA---ATACATGGCAATACA-ATAAAC-  45

seq1  CTAGGAATAAGTGAAATATAATACAGTTTTCTAAGGAATGACCTTGCCCA  100
      ||||||||||||| |||||||||||| ||||||||  |||| || |  ||
seq2  CTAGGAATAAGTG-AATATAATACAG-TTTCTAAG--ATGAACTGG--CA  89

seq1  TGCATGGAATTACTTATCCTGTCTCTCTCAGTGTACTGCCATTTTTGCCT  150
      ||||||  ||||||||||   | ||||||||||||||| ||||||   ||
seq2  TGCATG--ATTACTTATCTGTTTTCTCTCAGTGTACTG-CATTTT--GCT  134

seq1  ACTGGAGATGCTATGGTTGAGAAAGAAGTAATTTACATGGTCCAAACCTC  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTGGAGATGCTATGGTTGAGAAAGAAGTAATTTACATGGTCCAAA-CTC  183

seq1  ACCTCCAAAAATTCTACTCCTAAGGGCCTTCTCCAGAGCTCTTGTACTGA  250
      |||||  |||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTC--AAAATTCTACTCCTAAGGGCCTTCTCCAGAGCTC-TGTACTGA  230

seq1  ACTAATGACCATCGTA-TTTTTTTTTTTTTTGGATGTTTACATGAAGATG  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTAATGACCATCGTATTTTTTTTTTTTTTTGGATGTTTACATGAAGATG  280

seq1  GGCGTTAAAATATCCTGTTTTTGACTTTCAAAATGTGTAACATGAAAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTAAAATATCCTGTTTTTGACTTTCAAAATGTGTAACATGAAAAAC  330

seq1  TCCTGTCCCAGCCTTACCAGGGTTTTGTATGTTTTCTTTTTAAAAGTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCCAGCCTTACCAGGGTTTTGTATGTTTTCTTTTTAAAAGTGAA  380

seq1  TTAGAGAAAGATTTCTTTGTATTATACTCTTTACTGCTTTGTTTCCCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAGATTTCTTTGTATTATACTCTTTACTGCTTTGTTTCCCACA  430

seq1  GTTAACTTGTTGCTTTCTTTTTCAAGCCAAGACGCCGCACCAACTTTATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTGTTGCTTTCTTTTTCAAGCCAAGACGCCGCACCAACTTTATG  480

seq1  GGACTCCTTAGAAGAGCCTCATATTAGGGACACAAGTGAATTTGAATATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTTAGAAGAGCCTCATATTAGGGACACAAGTGAATTTGAATATT  530

seq1  TATTCTCCAAGGACACAACTCAACAGAAGAAAAAACCCCTGTCAGAGGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCAAGGACACAACTCAACAGAAGAAAAAACCCCTGTCAGAGGCC  580

seq1  TACGAAAAGAAGAACAAAGTCAAAAAGGTACTGTGCAATCATCATTTGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAAAGAAGAACAAAGTCAAAAAGGTACTGTGCAATCATCATTTGTC  630

seq1  ATCATATGCATGTCACAATCCACTACATCTGCCTGATTGGTCCCCTCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGCATGTCACAATCCACTACATCTGCCTGATTGGTCCCCTCTCC  680

seq1  CCAGAAAGGAATCCAAGTCTTGAATGGCAAAAGGATCCAGTTAGTTTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGGAATCCAAGTCTTGAATGGCAAAAGGATCCAGTTAGTTTAAG  730

seq1  AAATCTGGGCTTACTGCTTTGGCTTTCTCTTCTGAATTTTGAAATGTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGGCTTACTGCTTTGGCTTTCTCTTCTGAATTTTGAAATGTTAT  780

seq1  TCGGAACTGTTGTTTTAGTTGGGGTTACTACTGTTGTGAGGAAATACCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAACTGTTGTTTTAGTTGGGGTTACTACTGTTGTGAGGAAATACCAT  830

seq1  GACCAAAGACTTGGGAAGGAACATGTTTGCTAGGCATATGTTTCCTAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGACTTGGGAAGGAACATGTTTGCTAGGCATATGTTTCCTAGTC  880

seq1  ACAGTCTAAAGGAAGGACTGGACAGGAACTCAGATGGCAGGAGCTGATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTAAAGGAAGGACTGGACAGGAACTCAGATGGCAGGAGCTGATGC  930

seq1  AGAGGCTATGGGGGAGTGCTGCTTACAGCTTGCTCCTCATGGCTTGCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTATGGGGGAGTGCTGCTTACAGCTTGCTCCTCATGGCTTGCTCA  980

seq1  GCCTGTCTTTTGAGGACCACTGGCCTGGTGTGGCCCCACCCACAATTGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTTTTGAGGACCACTGGCCTGGTGTGGCCCCACCCACAATTGAC  1030

seq1  TGTGCCCTCTTACATGGATAACCAATTTAAAAAATGTTCTATCGACTTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTCTTACATGGATAACCAATTTAAAAAATGTTCTATCGACTTGC  1080

seq1  CTGCAACTGGATCTTATAGAGGCATTTTCTCAATTGAATTACCTTTCTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTGGATCTTATAGAGGCATTTTCTCAATTGAATTACCTTTCTCT  1130

seq1  CTAATGATCCTAGCATGTGTCAGGTTGACATAGAATTAGTCAGCACAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATCCTAGCATGTGTCAGGTTGACATAGAATTAGTCAGCACAATT  1180

seq1  ATAGTCATGAATTC  1213
      ||||||||||||||
seq2  ATAGTCATGAATTC  1194

seq1: chr2_113242724_113243858
seq2: B6Ng01-258C10.g_67_1188

seq1  GAATTCACTAATAGGAAAAATAAGGGTGGAAGGCCTGTTTAGCTGTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATAGGAAAAATAAGGGTGGAAGGCCTGTTTAGCTGTAGAC  50

seq1  TGCTCTAAGACTTGTGATTTCTGTTGCTACTTAAGACCGTCAGACTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGACTTGTGATTTCTGTTGCTACTTAAGACCGTCAGACTAAAA  100

seq1  AGTTATCTTGCCAACTATATAATTATTAGAAAATGAGACTATAGACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTTGCCAACTATATAATTATTAGAAAATGAGACTATAGACATAG  150

seq1  GATTTCCAAATTTGTATTTTTGTGAAAATAAAATTATTTCTCTTTGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAAATTTGTATTTTTGTGAAAATAAAATTATTTCTCTTTGGAAA  200

seq1  GAAAACCTTCCTGTTGGCCTTCCAGGTTATGGACAGGTTAGGACATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTTCCTGTTGGCCTTCCAGGTTATGGACAGGTTAGGACATTGAA  250

seq1  AACACTATCAACATTGATTTGAATATAACTATGCATCTCCCACGTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCAACATTGATTTGAATATAACTATGCATCTCCCACGTGGTTT  300

seq1  AGGGGTGAAGAGGTACAAAGAGCCTGTCATAAGACATTCATGCTCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAAGAGGTACAAAGAGCCTGTCATAAGACATTCATGCTCAGGAT  350

seq1  AATCATGTGAATGAGGCCTTATTTAAAAAACACATTTTTTTTTTCCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTGAATGAGGCCTTATTTAAAAAACACATTTTTTTTTTCCCTCT  400

seq1  AAGATGAGGGACTTACCATCCTGACTGTTGGCAAAATACAAAGATTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGACTTACCATCCTGACTGTTGGCAAAATACAAAGATTTGAT  450

seq1  TTTGTTGTGATTGAACTAAGCCCTTGTAGAATATGAAGTACAAATCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGATTGAACTAAGCCCTTGTAGAATATGAAGTACAAATCACAG  500

seq1  ATGAATGGTTTGTATATACTGTTTTTTTAGATCTTTTCTAGTCGTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTTTGTATATACTGTTTTTTTAGATCTTTTCTAGTCGTTTCTT  550

seq1  CATTATCTGTGGAAACCTTGAGCTCACATTTGAGTGCAGTGCAGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGTGGAAACCTTGAGCTCACATTTGAGTGCAGTGCAGTGTGTG  600

seq1  TGTGTGTATTTGTAGAGGTCAGTGGTCAGTGTTGTTGTGTATCTTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATTTGTAGAGGTCAGTGGTCAGTGTTGTTGTGTATCTTTCTCA  650

seq1  CTTGCTTTCTACCCTATTTTGGGGGACTGAATCTCACTGAGCCTAGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCTACCCTATTTTGGGGGACTGAATCTCACTGAGCCTAGAGGT  700

seq1  TACCAACTGGGTAGCAAGTTTCAGGAAATCACCTGTTCCCACTTCCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTGGGTAGCAAGTTTCAGGAAATCACCTGTTCCCACTTCCCTAG  750

seq1  AATTACAGGCCGTTGTAACTGGCTTTTAAAAAACATTTTGTTGTTTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGGCCGTTGTAACTGGCTTTTAAAAAACATTTTGTTGTTTGATG  800

seq1  TGGATACTAGAGATCAAACCCAGTGTCCCTTTTTGAGTAGCAAGCAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTAGAGATCAAACCCAGTGTCCCTTTTTGAGTAGCAAGCAACTT  850

seq1  TCCACCATTTCACATTCTCGAGGTCATATACATGACAGCAGTGAAGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATTTCACATTCTCGAGGTCATATACATGACAGCAGTGAAGCACC  900

seq1  TTATAGAAAAAGGCAAACCCTCTGCTGCAAAGAGAGCATGAGGATGGAGG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAG-AAAAGGCAAACCCTCTGCTGCAAAGAGAGCATGAGGATGGAGG  949

seq1  GACAATTGTCATCCAAAACTCACGATACTATAAGCACCTCTCTGTGTGGA  1000
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  GACAATTGTCATCCAAAACTCACGATACTAT-AGCA-CTCTCTGTGTGGA  997

seq1  GCAGTGGAAAACAACGATGCTTTAGAATCAGGCATTCTTTAGATTATATA  1050
      |||||||||||| |||||||||||| ||||||||||||||||| ||||||
seq2  GCAGTGGAAAAC-ACGATGCTTTAG-ATCAGGCATTCTTTAGA-TATATA  1044

seq1  ATAATTAGAAACATAAAAATAGTTTTAAAAAAGCCCACAAATGTAGAC-A  1099
      |||  ||||||||||||||||||||   |||||||||| ||||||||| |
seq2  ATA--TAGAAACATAAAAATAGTTT---AAAAGCCCAC-AATGTAGACAA  1088

seq1  TACAAGGATGTTCATTGCAA-CTCTTAAGACAGAAAA  1135
      ||||  ||||| |||||||| ||||| ||||||||||
seq2  TACA--GATGTCCATTGCAACCTCTT-AGACAGAAAA  1122