BAC Information

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BAC

Clone NameB6Ng01-258E02
Chromosome2 (Build37)
Map Location 172,454,125 - 172,565,963
singlet/doubletdoublet
Overlap geneLOC100043750
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c
Downstream geneBmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258E02.bB6Ng01-258E02.g
ACCGA063741GA063742
length1,111299
definitionB6Ng01-258E02.b B6Ng01-258E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,564,843 - 172,565,963)(172,454,125 - 172,454,429)
sequence
gaattcattccctaatctatgtgaccctggacaggagtctcttaccctga
cattaggttagaggacaaagagtttcacccctgtggggtggagggagttc
aggaagggagaggctgtgctggggatggaacccggggctcccccatgcta
tttgggcaaacattctaccaaccgagctacagtcccaggccggcaggcag
gcagtgtttataacagaaacgccaagttttctcagctagagtcccttctg
caacagaccgtgtcctgaagattagatttgtagacagaaacatgaacaac
gcacgcacatgggagccaatgcatagggagccccatgctccttctcgaag
cccaaagaaatcagtggctgtccgcatgaagatccttcacttcctagcca
gattggtgagtccctgccaggaggggaagtttggtaatgcctttgaaatc
ctttccaattgccattctgggtccacgcgaaatagaatttcattacagtt
ttttttttaattccaaacattagcggagactttttattttaaatgtgcat
aaatatttgtaatcggccctgcttggactgaagataaacagtcacaaaca
gtattgtgaccgcagtcccctccgctaacaacttcctcagagaggaacgg
ttgggttaatcaaaaggaaattgactgcagctgtggccaacctggggctt
gggggcagcactcgtggtaagagtcctcagcagaggcttacttcggaagg
agtgctgggacaccctaagacgctccggctctcctctcctctcctctcgg
ggattcggagcccgcgctgccagggttcttagaacaccgctgaccacggc
gggccttttggcatccagaactgggtgctaacccgaacattcgacggttt
gggaaatgtcatatgaaagaccacgtattgttttaatttatacctcaaca
ctctcccacctcggccacagaaaagaaagtcaaggtcccaggtcagtctg
ctgtctgctcaaccaagttagcgcttgactggtatctgagagtgaagggg
tgttgggcagcccaccctcggctgtcctctggacttccactgtctaggac
tccaagggact
ttgctgcccagattctcctagagagccgggtgattccagtcagctttggt
ctcctgccttctcagttttctagactggagaggagcagagggaacctaga
gcagcattccaggattgaggagaggccagaccccatctcttcctcatgct
gttgagagagtaagagcaggaaagaccccagaagagtgccctgacaagca
tgggggtggggcattggggagagggaccagatgagccgctttgggtggcc
atcagagagtgcctgtccaagaggtgacatttatgctgacccctgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172564843_172565963
seq2: B6Ng01-258E02.b_44_1154 (reverse)

seq1  AGTCCCTGGGAGGTCCCCTAGACAGTGGGAGTCCGGAGGACCAGCCCGAG  50
      ||||||| ||||    |||||||||||| ||||| ||||| ||| |||||
seq2  AGTCCCTTGGAG---TCCTAGACAGTGGAAGTCCAGAGGA-CAG-CCGAG  45

seq1  GGTGCGGCCTGCCCCAACACCCCTTCACCTCCCTCCAGATACCAGTCAAG  100
      |||  || ||| ||||||||||||||| |||    |||||||||||||||
seq2  GGT--GGGCTG-CCCAACACCCCTTCA-CTC---TCAGATACCAGTCAAG  88

seq1  CGCTAACCTTGGTTGAGCAGACAGCAGAACTGACCTGGGACC-TGACTTT  149
      |||||| |||||||||||||||||||| |||||||||||||| |||||||
seq2  CGCTAA-CTTGGTTGAGCAGACAGCAG-ACTGACCTGGGACCTTGACTTT  136

seq1  C-TTTCTGTGGCCGA-GTGGGAGAGTGTTGAGGTATAAATTAAAACAATA  197
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTGGCCGAGGTGGGAGAGTGTTGAGGTATAAATTAAAACAATA  186

seq1  CGTGGTCTTTCATATGACATTT-CCAAACCGTCGAATGTTCGGGTTAGCA  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGTGGTCTTTCATATGACATTTCCCAAACCGTCGAATGTTCGGGTTAGCA  236

seq1  CCCAGTTCTGGATGCCAAAAGGCCCGCCGTGGTCAGCGGTGTTCTAAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCTGGATGCCAAAAGGCCCGCCGTGGTCAGCGGTGTTCTAAGAA  286

seq1  CCCTGGCAGCGCGGGCTCCGAATCCCCGAGAGGAGAGGAGAGGAGAGCCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGCGCGGGCTCCGAATCCCCGAGAGGAGAGGAGAGGAGAGCCG  336

seq1  GAGCGTCTTAGGGTGTCCCAGCACTCCTTCCGAAGTAAGCCTCTGCTGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTCTTAGGGTGTCCCAGCACTCCTTCCGAAGTAAGCCTCTGCTGAG  386

seq1  GACTCTTACCACGAGTGCTGCCCCCAAGCCCCAGGTTGGCCACAGCTGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTACCACGAGTGCTGCCCCCAAGCCCCAGGTTGGCCACAGCTGCA  436

seq1  GTCAATTTCCTTTTGATTAACCCAACCGTTCCTCTCTGAGGAAGTTGTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTCCTTTTGATTAACCCAACCGTTCCTCTCTGAGGAAGTTGTTA  486

seq1  GCGGAGGGGACTGCGGTCACAATACTGTTTGTGACTGTTTATCTTCAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGGGACTGCGGTCACAATACTGTTTGTGACTGTTTATCTTCAGTC  536

seq1  CAAGCAGGGCCGATTACAAATATTTATGCACATTTAAAATAAAAAGTCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGGCCGATTACAAATATTTATGCACATTTAAAATAAAAAGTCTC  586

seq1  CGCTAATGTTTGGAATTAAAAAAAAAACTGTAATGAAATTCTATTTCGCG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAATGTTTGGAATTAAAAAAAAAACTGTAATGAAATTCTATTTCGCG  636

seq1  TGGACCCAGAATGGCAATTGGAAAGGATTTCAAAGGCATTACCAAACTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCAGAATGGCAATTGGAAAGGATTTCAAAGGCATTACCAAACTTC  686

seq1  CCCTCCTGGCAGGGACTCACCAATCTGGCTAGGAAGTGAAGGATCTTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGCAGGGACTCACCAATCTGGCTAGGAAGTGAAGGATCTTCAT  736

seq1  GCGGACAGCCACTGATTTCTTTGGGCTTCGAGAAGGAGCATGGGGCTCCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGACAGCCACTGATTTCTTTGGGCTTCGAGAAGGAGCATGGGGCTCCC  786

seq1  TATGCATTGGCTCCCATGTGCGTGCGTTGTTCATGTTTCTGTCTACAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTGGCTCCCATGTGCGTGCGTTGTTCATGTTTCTGTCTACAAAT  836

seq1  CTAATCTTCAGGACACGGTCTGTTGCAGAAGGGACTCTAGCTGAGAAAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTCAGGACACGGTCTGTTGCAGAAGGGACTCTAGCTGAGAAAAC  886

seq1  TTGGCGTTTCTGTTATAAACACTGCCTGCCTGCCGGCCTGGGACTGTAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTTTCTGTTATAAACACTGCCTGCCTGCCGGCCTGGGACTGTAGC  936

seq1  TCGGTTGGTAGAATGTTTGCCCAAATAGCATGGGGGAGCCCCGGGTTCCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTGGTAGAATGTTTGCCCAAATAGCATGGGGGAGCCCCGGGTTCCA  986

seq1  TCCCCAGCACAGCCTCTCCCTTCCTGAACTCCCTCCACCCCACAGGGGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCACAGCCTCTCCCTTCCTGAACTCCCTCCACCCCACAGGGGTG  1036

seq1  AAACTCTTTGTCCTCTAACCTAATGTCAGGGTAAGAGACTCCTGTCCAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTGTCCTCTAACCTAATGTCAGGGTAAGAGACTCCTGTCCAGG  1086

seq1  GTCACATAGATTAGGGAATGAATTC  1121
      |||||||||||||||||||||||||
seq2  GTCACATAGATTAGGGAATGAATTC  1111

seq1: chr2_172454125_172454429
seq2: B6Ng01-258E02.g_66_370

seq1  GAATTCTTGCTGCCCAGATTCTCCTAGAGAGCCGGGTGATTCCAGTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGCCCAGATTCTCCTAGAGAGCCGGGTGATTCCAGTCAGC  50

seq1  TTTGGTCTCCTGCCTTCTCAGTTTTCTAGACTGGAGAGGAGCAGAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTCCTGCCTTCTCAGTTTTCTAGACTGGAGAGGAGCAGAGGGAA  100

seq1  CCTAGAGCAGCATTCCAGGATTGAGGAGAGGCCAGACCCCATCTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGCAGCATTCCAGGATTGAGGAGAGGCCAGACCCCATCTCTTCCT  150

seq1  CATGCTGTTGAGAGAGTAAGAGCAGGAAAGACCCCAGAAGAGTGCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTTGAGAGAGTAAGAGCAGGAAAGACCCCAGAAGAGTGCCCTGA  200

seq1  CAAGCATGGGGGTGGGGCATTGGGGAGAGGGACCAGATGAGCCGCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGGGGGTGGGGCATTGGGGAGAGGGACCAGATGAGCCGCTTTGG  250

seq1  GTGGCCATCAGAGAGTGCCTGTCCAAGAGGTGACATTTATGCTGACCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATCAGAGAGTGCCTGTCCAAGAGGTGACATTTATGCTGACCCCT  300

seq1  GAGTG  305
      |||||
seq2  GAGTG  305