BAC Information

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BAC

Clone NameB6Ng01-258G24
Chromosome2 (Build37)
Map Location 155,391,076 - 155,557,232
singlet/doubletdoublet
Overlap geneGss, Myh7b, Trpc4ap, Edem2
Upstream geneE2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
Downstream geneProcr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258G24.bB6Ng01-258G24.g
ACCGA063876GA063877
length965819
definitionB6Ng01-258G24.b B6Ng01-258G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,391,076 - 155,392,029)(155,556,414 - 155,557,232)
sequence
gaattccaagatcagtgacagactgtgtttttaaaaatgatggagagcag
tagaggaagacagtagatgtgactatgcgtatacatacatagagagagag
acagacagagagaggcatgcgcgcgcgcgcgcgtgcgcgcgcgcgcacac
acacacacacacacacacatacacacagagagaggttgaggttctttaag
agttctctacctttgctctgtcctctactttctgtccctaaggcttcatt
tattctgcacactttaactcccaaatcttttaactcatgttctttgttct
agacatcataagatgtaccacatgtccctaatgcaaacttagtatatcca
catggatatctagttctgctagaacttacttctcctgaacttgctactcc
taataggatgaaaagcatccctgagtcctagttaagttcattctccctat
gtcaccctagttagcttacctgtcttaccaactcagaagtgttgccattt
atgctctatattgtcctaaccctagtctgggcctctacatgggtcttcat
gacaatgaagacctccatcagcctccttccatggtctctgtcacaaatac
ctcctctcctgccaggaaacttacaaaggctgaagctcatcgctactaaa
cggacttggattctgaatagttcatgtgtccctgccctgttggaatttta
atggcttactacatcacttgtgataaaacacagtttataacatatatttg
tggggggaggggaatgttgcataaaatgtgcacgcactcacacatttcat
gccatatgcaagtgggaggcagaggactatactgaagtatcttcttcaat
gggcccttctacctttactttttgaacagggtctctctctgaacctgaag
cctatctgcctttttctgctctctactccaaagtcccctaagatacagat
gcatggctgtcatgc
gaattccagaaatgggagaataaatttctcttgctttaagcttccatgtt
ggtgataatttgttctagtagcttgggaaacctatacagtctccctgtgt
tattatccaggtcttagtttcttttggtttcccttctatctggcccctct
aagaagtatttaaaaaatattctcctagtgactcagtatttgctatgcca
ttattataggcattttatatggttcactgaatcctctaaccctattaagc
aggtattaatattcttcataatttataaatgagaaaaaaaggtgaggcca
cactcctaataatactgccccaatttaacactgacacattgacccttgac
ccatctatactaaaacctttttattgaatttaggacccactttgggttag
atatggagtttaatttgtttatcaactgatggcactttgggacacttaat
gagggatattttcaagaatgctggattgggattggagagatggatcaatg
gttaagagtactaactactcttctagagcacctgggttgagtcttagcac
cacatggaagctcacaatacctataattctagacccagaggactctacac
ccttttctggcctcagaggtgacctggcatgcacaaaattatgtacaaaa
tcctcatgtacataaataaataatattattgtgtgctccaaacttgctta
taactcttcacctatgcttatgtaagcagccctaattaaacctaatctac
cccaatcacaaccacaaaaaatgacagtaggaggggtttgggaggaaaaa
ggaggagagaagaatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155391076_155392029
seq2: B6Ng01-258G24.b_45_1009

seq1  GAATTCCAAGATCAGTGACAGACTGTGTTTTTAAAAATGATGGAGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATCAGTGACAGACTGTGTTTTTAAAAATGATGGAGAGCAG  50

seq1  TAGAGGAAGACAGTAGATGTGACTATGCGTATACATACATAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGACAGTAGATGTGACTATGCGTATACATACATAGAGAGAGAG  100

seq1  ACAGACAGAGAGAGGCATGCGCGCGCGCGCGCGTGCGCGCGCGCGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGAGAGAGGCATGCGCGCGCGCGCGCGTGCGCGCGCGCGCACAC  150

seq1  ACACACACACACACACACATACACACAGAGAGAGGTTGAGGTTCTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATACACACAGAGAGAGGTTGAGGTTCTTTAAG  200

seq1  AGTTCTCTACCTTTGCTCTGTCCTCTACTTTCTGTCCCTAAGGCTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTACCTTTGCTCTGTCCTCTACTTTCTGTCCCTAAGGCTTCATT  250

seq1  TATTCTGCACACTTTAACTCCCAAATCTTTTAACTCATGTTCTTTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCACACTTTAACTCCCAAATCTTTTAACTCATGTTCTTTGTTCT  300

seq1  AGACATCATAAGATGTACCACATGTCCCTAATGCAAACTTAGTATATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCATAAGATGTACCACATGTCCCTAATGCAAACTTAGTATATCCA  350

seq1  CATGGATATCTAGTTCTGCTAGAACTTACTTCTCCTGAACTTGCTACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATATCTAGTTCTGCTAGAACTTACTTCTCCTGAACTTGCTACTCC  400

seq1  TAATAGGATGAAAAGCATCCCTGAGTCCTAGTTAAGTTCATTCTCCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGATGAAAAGCATCCCTGAGTCCTAGTTAAGTTCATTCTCCCTAT  450

seq1  GTCACCCTAGTTAGCTTACCTGTCTTACCAACTCAGAAGTGTTGCCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTAGTTAGCTTACCTGTCTTACCAACTCAGAAGTGTTGCCATTT  500

seq1  ATGCTCTATATTGTCCTAACCCTAGTCTGGGCCTCTACATGGGTCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTATATTGTCCTAACCCTAGTCTGGGCCTCTACATGGGTCTTCAT  550

seq1  GACAATGAAGACCTCCATCAGCCTCCTTCCATGGTCTCTGTCACAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAAGACCTCCATCAGCCTCCTTCCATGGTCTCTGTCACAAATAC  600

seq1  CTCCTCTCCTGCCAGGAAACTTACAAAGGCTGAAGCTCATCGCTACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCCTGCCAGGAAACTTACAAAGGCTGAAGCTCATCGCTACTAAA  650

seq1  CGGACTTGGATTCTGAATAGTTCATGTGTCCCTGCCCTGTTGGAATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTTGGATTCTGAATAGTTCATGTGTCCCTGCCCTGTTGGAATTTTA  700

seq1  ATGGCTTACTACATCACTTGTGATAAAACACAGTTTATAACATATATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTACTACATCACTTGTGATAAAACACAGTTTATAACATATATTTG  750

seq1  TGGGGGGAGGGGAATG-TGCAT-AAATGTGCACGCACACACACA-TTCAT  797
      |||||||||||||||| ||||| |||||||||||||| |||||| |||||
seq2  TGGGGGGAGGGGAATGTTGCATAAAATGTGCACGCACTCACACATTTCAT  800

seq1  G-CATATGCAAGT-GGAGGCAGAGGACAATACTGAAGTATCTTCTTCAAT  845
      | ||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  GCCATATGCAAGTGGGAGGCAGAGGACTATACTGAAGTATCTTCTTCAAT  850

seq1  GG--CCCTCTACC-TTAC-TTTTGAACAGGGTCTCTCACTGAACCTGGAG  891
      ||  || |||||| |||| |||||||||||||||||| ||||||||| ||
seq2  GGGCCCTTCTACCTTTACTTTTTGAACAGGGTCTCTCTCTGAACCTGAAG  900

seq1  CCTATCTGCCTTTTTCTGCCCTCTACTCCACAGTCCCC-GAGATACAGAT  940
      ||||||||||||||||||| |||||||||| |||||||  ||||||||||
seq2  CCTATCTGCCTTTTTCTGCTCTCTACTCCAAAGTCCCCTAAGATACAGAT  950

seq1  GC-TTGCTGTCATGC  954
      || | ||||||||||
seq2  GCATGGCTGTCATGC  965

seq1: chr2_155556414_155557232
seq2: B6Ng01-258G24.g_66_884 (reverse)

seq1  CACCATTCTTCTCTCCTCCTTTTTCCTCCCAAACCCCTCCTACTGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCTTCTCTCCTCCTTTTTCCTCCCAAACCCCTCCTACTGTCATT  50

seq1  TTTTGTGGTTGTGATTGGGGTAGATTAGGTTTAATTAGGGCTGCTTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTTGTGATTGGGGTAGATTAGGTTTAATTAGGGCTGCTTACAT  100

seq1  AAGCATAGGTGAAGAGTTATAAGCAAGTTTGGAGCACACAATAATATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAGGTGAAGAGTTATAAGCAAGTTTGGAGCACACAATAATATTAT  150

seq1  TTATTTATGTACATGAGGATTTTGTACATAATTTTGTGCATGCCAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTACATGAGGATTTTGTACATAATTTTGTGCATGCCAGGTCA  200

seq1  CCTCTGAGGCCAGAAAAGGGTGTAGAGTCCTCTGGGTCTAGAATTATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGGCCAGAAAAGGGTGTAGAGTCCTCTGGGTCTAGAATTATAGG  250

seq1  TATTGTGAGCTTCCATGTGGTGCTAAGACTCAACCCAGGTGCTCTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAGCTTCCATGTGGTGCTAAGACTCAACCCAGGTGCTCTAGAAG  300

seq1  AGTAGTTAGTACTCTTAACCATTGATCCATCTCTCCAATCCCAATCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAGTACTCTTAACCATTGATCCATCTCTCCAATCCCAATCCAGC  350

seq1  ATTCTTGAAAATATCCCTCATTAAGTGTCCCAAAGTGCCATCAGTTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAAAATATCCCTCATTAAGTGTCCCAAAGTGCCATCAGTTGATA  400

seq1  AACAAATTAAACTCCATATCTAACCCAAAGTGGGTCCTAAATTCAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTAAACTCCATATCTAACCCAAAGTGGGTCCTAAATTCAATAAA  450

seq1  AAGGTTTTAGTATAGATGGGTCAAGGGTCAATGTGTCAGTGTTAAATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTAGTATAGATGGGTCAAGGGTCAATGTGTCAGTGTTAAATTGG  500

seq1  GGCAGTATTATTAGGAGTGTGGCCTCACCTTTTTTTCTCATTTATAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATTATTAGGAGTGTGGCCTCACCTTTTTTTCTCATTTATAAATT  550

seq1  ATGAAGAATATTAATACCTGCTTAATAGGGTTAGAGGATTCAGTGAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATATTAATACCTGCTTAATAGGGTTAGAGGATTCAGTGAACCA  600

seq1  TATAAAATGCCTATAATAATGGCATAGCAAATACTGAGTCACTAGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGCCTATAATAATGGCATAGCAAATACTGAGTCACTAGGAGAA  650

seq1  TATTTTTTAAATACTTCTTAGAGGGGCCAGATAGAAGGGAAACCAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAATACTTCTTAGAGGGGCCAGATAGAAGGGAAACCAAAAGA  700

seq1  AACTAAGACCTGGATAATAACACAGGGAGACTGTATAGGTTTCCCAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGACCTGGATAATAACACAGGGAGACTGTATAGGTTTCCCAAGCT  750

seq1  ACTAGAACAAATTATCACCAACATGGAAGCTTAAAGCAAGAGAAATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACAAATTATCACCAACATGGAAGCTTAAAGCAAGAGAAATTTAT  800

seq1  TCTCCCATTTCTGGAATTC  819
      |||||||||||||||||||
seq2  TCTCCCATTTCTGGAATTC  819