BAC Information

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BAC

Clone NameB6Ng01-258I01
Chromosome2 (Build37)
Map Location 119,389,721 - 119,501,710
singlet/doubletdoublet
Overlap gene1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1
Upstream geneLOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1
Downstream geneItpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I01.bB6Ng01-258I01.g
ACCGA063926GA063927
length1,1221,158
definitionB6Ng01-258I01.b B6Ng01-258I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,389,721 - 119,390,834)(119,500,559 - 119,501,710)
sequence
gaattcataggtcataggttcacattgggtatcttcttaactctctatat
ttttattttattttttatacagagttcttactacttagccttggctggcc
tggaactcactatgtagactagactggtgtctgcctgtatccttaatgct
gtggattaaggcataagctacctgtcccagacagtggttgttttgttttg
tttgtttgtttgttttttgacacagggtttctctttgtagccctggctgc
ctggatctcactctgtaggccaggttggccttgaactcagatccggctgc
ttctgtcttctgagtgctgggattaaaggcatgcaccatgattgcctggc
agtcttaatttttaatataaggtcttaatgtaaaatttagaactcatcaa
ttctgctaagctgactggacagtaaactgcaggtatctacttttccatct
ccgcagtgctgggattacagatgtgcactgccatatctggcttttttcca
cgggtgctggggatctgagctcaggttcttagtcgtgtgaggcaagcact
tgaatgacataatcatcttacagcccctgttgttctgtttggctgccctt
cagcttattacctgacccaggatgcctgagaacttcaggtgctcttacct
ttgccttcccttgtggagacttcaggcctgccctgtttcacccagtttat
gtcgtgctgggattgaatccatgatttcttgcacctgtataagcactcta
ccaaccgggctgcatctgaagctccactcccacagtccttcagtctcttt
tgatccatagcagtcttctctacctttgggttgggttgtgctagggatcg
ccttcgtctgctgaggagatgctccaccaacgatagaagccttagctctt
ccctaaccctccatgacactgatacttttgaaaagtaaatcaatagacag
ttttgagttcctcacataggataatccaaggagttttaagagaaaatact
gagcaatttttaaatcaagcaattgtccaaaaatgttaattatggctagg
gtatggtagcaatgcctggtaatcccagtactccaggacagaaggcaagg
gaaaccaagtgttccagcctgg
gaattctatgctgctgcataaaagaggctgagcgcttggaacacagtctc
tctctgctgccctacaattcaaacttccagttatctgccctctctcctcc
tccaaagagttttttgtcagacatcccaacgagaacccatttcgaccgta
aatgatcatagtctcccccccaccccaagcaccacgaaagctcttcggga
catgtatgggtgtctctcctatgtccacatgcctggtctgaaaaacttca
ccttccagagtccacaccttctagacaaattttccctcccaccgccccat
gctcacccttgcacctcctccaaaatctctcagccattggggttggcggg
cgatacttcctatctcgcccagcccgaatctccctgcctgcagtcatgac
gtcccgatccggcccaagcagacagcggcccccttcagtaccccaaaccc
cgaggcccatcagcccaattccctgccccgcctcccggcccaaggcgcca
agtcctcggggctctgtctccaggcctggcccgggctccaagggcctaag
attcagcggggagacaggaagggactacagtagcgggacggacaccaggc
tggccgggcgctcgggccgggcgactcccagctcccgtggccaggactga
gccctcccgctctgccggcccgcgcctccgcggcctgccctcacctgatc
caggttctcgtcactgccgctgtcttccgtatccgagtcgatcacgacac
ggcctttccgcttctttaccatggtggtcccccggcttccacgccggacg
ccgccctgactcccctcttgcccgcctgccagtgggaccgccactgccgc
cgccgccaccgccgccgccaccgccgccgctcgacccacacaaaggcgac
cgcgcatgcgcgctccgctccgcccctagccccgccccccggcctggcgc
acgccgtttcgccggcgcctggcgccccgcccggccccactcgacgcagt
cgcgaggggtcggagccacgcgcccggaagggttccggaccaccgctccc
tgatctagctggtcccgggaggctctgcagtgttgggagtggtaagcttg
ccaggagttcctacttgtagccgttttggagctcggaccagggttccact
ctgaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119389721_119390834
seq2: B6Ng01-258I01.b_48_1169

seq1  GAATTCATAGGTCATAGGTTCACATTGGGTATCTTCTTAACTCTCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTCATAGGTTCACATTGGGTATCTTCTTAACTCTCTATAT  50

seq1  TTTTATTTTATTTTTTATACAGAGTTCTTACTACTTAGCCTTGGCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTTTATACAGAGTTCTTACTACTTAGCCTTGGCTGGCC  100

seq1  TGGAACTCACTATGTAGACTAGACTGGTGTCTGCCTGTATCCTTAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTATGTAGACTAGACTGGTGTCTGCCTGTATCCTTAATGCT  150

seq1  GTGGATTAAGGCATAAGCTACCTGTCCCAGACAGTGGTTGTTTTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTAAGGCATAAGCTACCTGTCCCAGACAGTGGTTGTTTTGTTTTG  200

seq1  TTTGTTTGTTTGTTTTTTGACACAGGGTTTCTCTTTGTAGCCCTGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTTTGACACAGGGTTTCTCTTTGTAGCCCTGGCTGC  250

seq1  CTGGATCTCACTCTGTAGGCCAGGTTGGCCTTGAACTCAGATCCGGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTCACTCTGTAGGCCAGGTTGGCCTTGAACTCAGATCCGGCTGC  300

seq1  TTCTGTCTTCTGAGTGCTGGGATTAAAGGCATGCACCATGATTGCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTTCTGAGTGCTGGGATTAAAGGCATGCACCATGATTGCCTGGC  350

seq1  AGTCTTAATTTTTAATATAAGGTCTTAATGTAAAATTTAGAACTCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAATTTTTAATATAAGGTCTTAATGTAAAATTTAGAACTCATCAA  400

seq1  TTCTGCTAAGCTGACTGGACAGTAAACTGCAGGTATCTACTTTTCCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAAGCTGACTGGACAGTAAACTGCAGGTATCTACTTTTCCATCT  450

seq1  CCGCAGTGCTGGGATTACAGATGTGCACTGCCATATCTGGCTTTTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGTGCTGGGATTACAGATGTGCACTGCCATATCTGGCTTTTTTCCA  500

seq1  CGGGTGCTGGGGATCTGAGCTCAGGTTCTTAGTCGTGTGAGGCAAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCTGGGGATCTGAGCTCAGGTTCTTAGTCGTGTGAGGCAAGCACT  550

seq1  TGAATGACATAATCATCTTACAGCCCCTGTTGTTCTGTTTGGCTGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACATAATCATCTTACAGCCCCTGTTGTTCTGTTTGGCTGCCCTT  600

seq1  CAGCTTATTACCTGACCCAGGATGCCTGAGAACTTCAGGTGCTCTTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATTACCTGACCCAGGATGCCTGAGAACTTCAGGTGCTCTTACCT  650

seq1  TTGCCTTCCCTTGTGGAGACTTCAGGCCTGCCCTGTTTCACCCAGTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCCCTTGTGGAGACTTCAGGCCTGCCCTGTTTCACCCAGTTTAT  700

seq1  GTCGTGCTGGGATTGAATCCATGATTTCTTGCACCTGTATAAGCACTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGCTGGGATTGAATCCATGATTTCTTGCACCTGTATAAGCACTCTA  750

seq1  CCAACCGGGCTGCATCTGAAGCTCCACTCCCACAGTCCTTCAGTCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCGGGCTGCATCTGAAGCTCCACTCCCACAGTCCTTCAGTCTCTTT  800

seq1  TGATCCATAGCAGTCTTCTCTACCTTTGGGTTGGGTTGTGCTAGGGATCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATAGCAGTCTTCTCTACCTTTGGGTTGGGTTGTGCTAGGGATCG  850

seq1  CCTTCGTCTGCTGAGGAGATGCTCCACCAACGATAGAAGCCTTAGCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTCTGCTGAGGAGATGCTCCACCAACGATAGAAGCCTTAGCTCTT  900

seq1  CCCTAACCCTCCATGACACTGATACTTTTGAAAAGTAAATC-ATAGACAG  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCTAACCCTCCATGACACTGATACTTTTGAAAAGTAAATCAATAGACAG  950

seq1  TTTTGAGTTCCTCACATAGGAT-ATCCAAGGAGTTTT-AGAG-AAATACT  996
      |||||||||||||||||||||| |||||||||||||| |||| |||||||
seq2  TTTTGAGTTCCTCACATAGGATAATCCAAGGAGTTTTAAGAGAAAATACT  1000

seq1  GAGCAATTTTTAAAAC-AGCAA-TGTTCAAAAATTTTAATATGGGCTAGG  1044
      |||||||||||||| | ||||| ||| ||||||| |||||   |||||||
seq2  GAGCAATTTTTAAATCAAGCAATTGTCCAAAAATGTTAATTATGGCTAGG  1050

seq1  GTATGGTAGCAAATGCCT-GTAATCCCAGTACTCAGGGACAG-AGGC-AG  1091
      |||||||||| ||||||| |||||||||||||||  |||||| |||| ||
seq2  GTATGGTAGC-AATGCCTGGTAATCCCAGTACTCCAGGACAGAAGGCAAG  1099

seq1  GGAAACCAAGTGTTCCAGCCTGG  1114
      |||||||||||||||||||||||
seq2  GGAAACCAAGTGTTCCAGCCTGG  1122

seq1: chr2_119500559_119501710
seq2: B6Ng01-258I01.g_67_1224 (reverse)

seq1  TTCCTCAGAGTGG-ACCCTGGTCCGGAGGCTCAAATTCGCTTCAAGTAGG  49
      ||||||||||||| |||||||||| |||   ||||   ||| |||||| |
seq2  TTCCTCAGAGTGGAACCCTGGTCC-GAGCTCCAAAACGGCTACAAGTA-G  48

seq1  GAACTCCTGGGCAGCCTACAACT-CCAACACTGCAGAAGCTTCCGG--AC  96
      ||||||||||  ||| ||| ||| |||||||||||||  || ||||   |
seq2  GAACTCCTGGCAAGCTTACCACTCCCAACACTGCAGAGCCTCCCGGGACC  98

seq1  AGCTAGATCAGGGAGCGTTGGTCCGGAACCCT--CGGGCGCGTGGCTCCG  144
      ||||||||||||||||| ||||||||||||||  ||||||||||||||||
seq2  AGCTAGATCAGGGAGCGGTGGTCCGGAACCCTTCCGGGCGCGTGGCTCCG  148

seq1  -CCCCTCGCG-CTGCGTCGGAGGTGGGGCGGGGCGGGGCGCCAGGCGCCG  192
       ||||||||| ||||||||   ||||||| ||||||||||||||||||||
seq2  ACCCCTCGCGACTGCGTCG--AGTGGGGCCGGGCGGGGCGCCAGGCGCCG  196

seq1  GCG-AACGGCGTGCGCCAGG-CGGGGGGCGGGGCTAGGGGCGGAGCGGAG  240
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCGAAACGGCGTGCGCCAGGCCGGGGGGCGGGGCTAGGGGCGGAGCGGAG  246

seq1  CGCGCATGCGCGGTCGCCTTTGTGTGGGTCGAGCGGCGGCGGTGGCGGCG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCATGCGCGGTCGCCTTTGTGTGGGTCGAGCGGCGGCGGTGGCGGCG  296

seq1  GCGGTGGCGGCGGCGGCAGTGGCGGTCCCACTGGCAGGCGGGCAAGAGGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGCGGCGGCGGCAGTGGCGGTCCCACTGGCAGGCGGGCAAGAGGG  346

seq1  GAGTCAGGGCGGCGTCCGGCGTGGAAGCCGGGGGACCACCATGGTAAAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGGCGGCGTCCGGCGTGGAAGCCGGGGGACCACCATGGTAAAGA  396

seq1  AGCGGAAAGGCCGTGTCGTGATCGACTCGGATACGGAAGACAGCGGCAGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAAAGGCCGTGTCGTGATCGACTCGGATACGGAAGACAGCGGCAGT  446

seq1  GACGAGAACCTGGATCAGGTGAGGGCAGGCCGCGGAGGCGCGGGCCGGCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGAACCTGGATCAGGTGAGGGCAGGCCGCGGAGGCGCGGGCCGGCA  496

seq1  GAGCGGGAGGGCTCAGTCCTGGCCACGGGAGCTGGGAGTCGCCCGGCCCG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGAGGGCTCAGTCCTGGCCACGGGAGCTGGGAGTCGCCCGGCCCG  546

seq1  AGCGCCCGGCCAGCCTGGTGTCCGTCCCGCTACTGTAGTCCCTTCCTGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCGGCCAGCCTGGTGTCCGTCCCGCTACTGTAGTCCCTTCCTGTC  596

seq1  TCCCCGCTGAATCTTAGGCCCTTGGAGCCCGGGCCAGGCCTGGAGACAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCTGAATCTTAGGCCCTTGGAGCCCGGGCCAGGCCTGGAGACAGA  646

seq1  GCCCCGAGGACTTGGCGCCTTGGGCCGGGAGGCGGGGCAGGGAATTGGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAGGACTTGGCGCCTTGGGCCGGGAGGCGGGGCAGGGAATTGGGC  696

seq1  TGATGGGCCTCGGGGTTTGGGGTACTGAAGGGGGCCGCTGTCTGCTTGGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCCTCGGGGTTTGGGGTACTGAAGGGGGCCGCTGTCTGCTTGGG  746

seq1  CCGGATCGGGACGTCATGACTGCAGGCAGGGAGATTCGGGCTGGGCGAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCGGGACGTCATGACTGCAGGCAGGGAGATTCGGGCTGGGCGAGA  796

seq1  TAGGAAGTATCGCCCGCCAACCCCAATGGCTGAGAGATTTTGGAGGAGGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTATCGCCCGCCAACCCCAATGGCTGAGAGATTTTGGAGGAGGT  846

seq1  GCAAGGGTGAGCATGGGGCGGTGGGAGGGAAAATTTGTCTAGAAGGTGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTGAGCATGGGGCGGTGGGAGGGAAAATTTGTCTAGAAGGTGTG  896

seq1  GACTCTGGAAGGTGAAGTTTTTCAGACCAGGCATGTGGACATAGGAGAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGAAGGTGAAGTTTTTCAGACCAGGCATGTGGACATAGGAGAGA  946

seq1  CACCCATACATGTCCCGAAGAGCTTTCGTGGTGCTTGGGGTGGGGGGGAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATACATGTCCCGAAGAGCTTTCGTGGTGCTTGGGGTGGGGGGGAG  996

seq1  ACTATGATCATTTACGGTCGAAATGGGTTCTCGTTGGGATGTCTGACAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATCATTTACGGTCGAAATGGGTTCTCGTTGGGATGTCTGACAAA  1046

seq1  AAACTCTTTGGAGGAGGAGAGAGGGCAGATAACTGGAAGTTTGAATTGTA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTGGAGGAGGAGAGAGGGCAGATAACTGGAAGTTTGAATTGTA  1096

seq1  GGGCAGCAGAGAGAGACTGTGTTCCAAGCGCTCAGCCTCTTTTATGCAGC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCAGAGAGAGACTGTGTTCCAAGCGCTCAGCCTCTTTTATGCAGC  1146

seq1  AGCATAGAATTC  1152
      ||||||||||||
seq2  AGCATAGAATTC  1158