BAC Information

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BAC

Clone NameB6Ng01-258I14
Chromosome9 (Build37)2 (Build37)
Map Location 110,553,545 - 110,553,98326,888,987 - 26,889,150
singlet/doubletsingletsinglet
Overlap geneNbeal2
Upstream geneE330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd
Downstream geneCcdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I14.bB6Ng01-258I14.g
ACCGA063950GA063951
length433971
definitionB6Ng01-258I14.b B6Ng01-258I14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,553,545 - 110,553,983)(26,888,987 - 26,889,150)
sequence
agctcagtttccctgtcctgccaggctctttgtgatcctcagctccccca
tcagtgtgtgtgtgtgtgcacgtgcgtgcactgctccagcctgcagaggg
gctgctcatttacaggctattttgcattaaccttcccaagtgccagcatg
ccaggtgctgtccccatctcctggtcctcttgagcttctcctgtttcttc
cttgaggactctggtaggtgtgttctacccattcaccatggcagctctgt
cctgctccctacttcagacaacttgatgctgcttctcttcctcctctttc
agacagggtctcactttgtagaccaagttgttctggaactcataagagat
ctgactgcttctgccttcaagtggtgggattaaaggtgaagaggggggtg
tcagaatgagaaagagagaggggggagagggac
gaattcaaaataattatcttcaagaaattcagcagagtgtagaaaatgca
gacagacaactcagggtgatcaagagaataattcatttaatcagagtgag
ctaagaggcagatgtgaaagtgaaccaagtcgggcagtggtgccacacgc
ctttaatcctagcacttgggagacagaggcaggtggatttctgagtttga
ggccagcctggtcttcagagtaagttccaggacatccagggctatacaga
gaaacactgtctcagaaaaaaaaaaaaggaaaagaaagaagagagagaga
gagagagagagagagagagagaaccaattagaaatattgaaagtgaaaaa
ttcaacaaattaaataaccacaaactcacagacggggtcgagtagaagaa
aagaatttctgaacatgaagagaggccctttgacataacccagagggagt
gggtatggtggcacatgcctgcaatcccagcactcaaaagggaggggtca
ggggaaggactacaagcctgggctacaataatgagtaacaggtcaggctg
ggctggaccccagcactggggaggcagagacagacagatccccaggactc
actgaccagtcagacctcctagcctgtctcaacaaatccaacccataatg
aatgacaccaaggtcaacctgcagcctctacatgcactttgtgcatacac
acacacacacacacacacacacacacacacacacacacacacacgaattg
ttaaacatctgagtatgatgtatgaacaatatgggagttgagcggatgag
gatagaaacagaacacttatttaataaaataatagctgaaacctccccag
atccagacaacctctagatccaaagagccagggcatgggtggcacacgct
ctttaatcccagcactcggggaggcagaggcaggtggaattttctgagtt
cgaggccagcctggtctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110553545_110553983
seq2: B6Ng01-258I14.b_51_489

seq1  GAATTCAGCTCAGTTTCCCTGTCCTGCCAGGCTCTTTGTGATCCTCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGTTTCCCTGTCCTGCCAGGCTCTTTGTGATCCTCAGCT  50

seq1  CCCCCATCAGTGTGTGTGTGTGTGCACGTGCGTGCACTGCTCCAGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCAGTGTGTGTGTGTGTGCACGTGCGTGCACTGCTCCAGCCTGC  100

seq1  AGAGGGGCTGCTCATTTACAGGCTATTTTGCATTAACCTTCCCAAGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTGCTCATTTACAGGCTATTTTGCATTAACCTTCCCAAGTGCC  150

seq1  AGCATGCCAGGTGCTGTCCCCATCTCCTGGTCCTCTTGAGCTTCTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCCAGGTGCTGTCCCCATCTCCTGGTCCTCTTGAGCTTCTCCTGT  200

seq1  TTCTTCCTTGAGGACTCTGGTAGGTGTGTTCTACCCATTCACCATGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTGAGGACTCTGGTAGGTGTGTTCTACCCATTCACCATGGCAG  250

seq1  CTCTGTCCTGCTCCCTACTTCAGACAACTTGATGCTGCTTCTCTTCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTGCTCCCTACTTCAGACAACTTGATGCTGCTTCTCTTCCTCC  300

seq1  TCTTTCAGACAGGGTCTCACTTTGTAGACCAAGTTGTTCTGGAACTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGACAGGGTCTCACTTTGTAGACCAAGTTGTTCTGGAACTCATA  350

seq1  AGAGATCTGACTGCTTCTGCCTTCAAGTGGTGGGATTAAAGGTGAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGACTGCTTCTGCCTTCAAGTGGTGGGATTAAAGGTGAAGAGG  400

seq1  GGGGTGTCAGAATGAGAAAGAGAGAGGGGGGAGAGGGAC  439
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTCAGAATGAGAAAGAGAGAGGGGGGAGAGGGAC  439

seq1: chr2_26888987_26889150
seq2: B6Ng01-258I14.g_199_370 (reverse)

seq1  CTCTCTCTCTCTC-----TCTTT---TTTTTTTTTTTCCTGAGACAGGGT  42
      |||||||||||||     |||||   ||||||||||| ||||||||| ||
seq2  CTCTCTCTCTCTCTTCTTTCTTTTCCTTTTTTTTTTTTCTGAGACAGTGT  50

seq1  TTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTG  92
      |||||||||||||||||| ||| |||||||| ||| || |||||||||||
seq2  TTCTCTGTATAGCCCTGGATGTCCTGGAACTTACTCTGAAGACCAGGCTG  100

seq1  GCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGACTA  142
      ||||||||||||||||||  |||||||||| |||||||||||| ||| ||
seq2  GCCTCAAACTCAGAAATCCACCTGCCTCTGTCTCCCAAGTGCTAGGATTA  150

seq1  AAGGCGTGCGCCACCACTGCCC  164
      |||||||| | |||||||||||
seq2  AAGGCGTGTGGCACCACTGCCC  172