BAC Information

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BAC

Clone NameB6Ng01-258L17
Chromosome2 (Build37)
Map Location 108,667,649 - 108,790,952
singlet/doubletdoublet
Overlap geneLOC100043423, LOC623031
Upstream geneLOC100043078, LOC668790, LOC623003
Downstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L17.bB6Ng01-258L17.g
ACCGA064094GA064095
length1,1031,098
definitionB6Ng01-258L17.b B6Ng01-258L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,667,649 - 108,668,758)(108,789,852 - 108,790,952)
sequence
gaattccgcatcccccaccccccttctctctcctcttgaaagatgtgcaa
gtgttagtaagccctgcagacaagcaatccgtcaggcagaaggcagccca
gagcctttaaataaaacattctcacagccttccacggagagcatggagac
aaataccgcggatgtgaaaggtgtcgctgggattaccaatgacgtgctaa
tggctgttcaggcaatctcagtgcctcctgtgctctgagtcactggttcc
ctttggagcctgcactcacgtcattcagggaccaagagctattcacagat
cactgactaaaggcaagcttgagccaggcctgcacgcccctagccctctc
caaagaactaaggtcacaaagacaggaggccccagagctttttatcacag
acacaagaaagagagagggagggcaaagctttctgtcttcctctcatctg
ttcctctcactggacttttgaaaataagaactttactcttgttccagaac
tcctaaacacacactttcctttgttttgttctttgtgtaactgcttagtt
gaattgattgtgatttcattagtttgttcttgcaataatgagagcacctg
agagataagaggaaaaaaagcaatgtaatattctgagacatcacagctta
cactgccctgatgaaatcctttgaaataaaacatcacttggttttcccac
caggcacttctgtatgaaataaagtcacacgtctgctctggtcactctga
cagctcctgtgacagacatttccaaatcaactttcaagaagtcacatctt
ggtaagtctaaagagctatatttagctctttggaaataatttgggagtgc
aaactgaacaagaaaaaaaaaaaagccctcagaatgagctggatggcttt
gggggaataagtaatagccacagaattctttatttctagtaacccatgat
ctcctggatggatatttaactcccttgccctcccctaagttcataatagc
acgggctaactcccctcaggttgatcacaggatattttcctggtggcagc
aaaaatggcattcatgtatagaggccaggaggtctatatagctcagttgt
ttt
gaattctttgttcagttctgagccccattttttaatggggttattcgatt
ttctttttttttttttttaatacatgtctactttattaaggtcaaccaac
atggtatctatgtctctaagcatttcaggtttaagagatgtttagattat
ttttttttctatagtaagttaacttaggcacatcggtttgtattttagaa
aaaaataattatctctatgacacagacaggaataaggagtatctgcaaat
gttacaaagatgattctaaacctgagctagcctctctctctccaagtggc
tagcagccattagtctctgtgaaaagaaataacaggaactgcgcaaacat
ctgtaatagtctggaacttagagagcagaagctgtgattatcgaaaacct
cgaacactggcaaggctggattgcaaagtatttaagagaaggccacaaat
gttgtttcctaagaagagctaggaactgcaggtatcacttggtagtgcat
tgaaatggcattgcccagtgcaagtgctgaagagatcagtcggtcgcctc
cttctagagcagtcatttggggtaagcttccacaatcatagcatgaccct
gtcctccagctgcacaggcagccactaaagcatactggcctccatccttc
ctcagtctgttggcagctgccatgaccagccgacagccagtggctccaaa
agggtgccccagagacagtgatccgccccagatattaaacttctccagag
gaggtgatccaaccttggttttcctacccatgtagttttgtgcaaaccaa
tcagaatccatggctttaaagttagctaaaatctggcctgagaaggcttc
atgaaattcaaagcatcgatatcattcatggttaaccctgccttttctaa
aacttttggagtagcatatgttggtccgagtaaaagctgatctttcggat
cctggacacatatataaaatccctcaaattatgcctttggtttataacca
atggccagagctctgtctctgacatgattagcatcgcagagcgcatcagt
tcagaaagaagaatttggcagcttgtcactgtgcatagggtttgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108667649_108668758
seq2: B6Ng01-258L17.b_50_1152

seq1  GAATTCCGCATCCCCCACCCCCCTTCTCTCTCCTCTTGAAAGATGTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCATCCCCCACCCCCCTTCTCTCTCCTCTTGAAAGATGTGCAA  50

seq1  GTGTTAGTAAGCCCTGCAGACAAGCAATCCGTCAGGCAGAAGGCAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTAAGCCCTGCAGACAAGCAATCCGTCAGGCAGAAGGCAGCCCA  100

seq1  GAGCCTTTAAATAAAACATTCTCACAGCCTTCCACGGAGAGCATGGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTAAATAAAACATTCTCACAGCCTTCCACGGAGAGCATGGAGAC  150

seq1  AAATACCGCGGATGTGAAAGGTGTCGCTGGGATTACCAATGACGTGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCGCGGATGTGAAAGGTGTCGCTGGGATTACCAATGACGTGCTAA  200

seq1  TGGCTGTTCAGGCAATCTCAGTGCCTCCTGTGCTCTGAGTCACTGGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCAGGCAATCTCAGTGCCTCCTGTGCTCTGAGTCACTGGTTCC  250

seq1  CTTTGGAGCCTGCACTCACGTCATTCAGGGACCAAGAGCTATTCACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGCCTGCACTCACGTCATTCAGGGACCAAGAGCTATTCACAGAT  300

seq1  CACTGACTAAAGGCAAGCTTGAGCCAGGCCTGCACGCCCCTAGCCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTAAAGGCAAGCTTGAGCCAGGCCTGCACGCCCCTAGCCCTCTC  350

seq1  CAAAGAACTAAGGTCACAAAGACAGGAGGCCCCAGAGCTTTTTATCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTAAGGTCACAAAGACAGGAGGCCCCAGAGCTTTTTATCACAG  400

seq1  ACACAAGAAAGAGAGAGGGAGGGCAAAGCTTTCTGTCTTCCTCTCATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAAAGAGAGAGGGAGGGCAAAGCTTTCTGTCTTCCTCTCATCTG  450

seq1  TTCCTCTCACTGGACTTTTGAAAATAAGAACTTTACTCTTGTTCCAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCACTGGACTTTTGAAAATAAGAACTTTACTCTTGTTCCAGAAC  500

seq1  TCCTAAACACACACTTTCCTTTGTTTTGTTCTTTGTGTAACTGCTTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACACACACTTTCCTTTGTTTTGTTCTTTGTGTAACTGCTTAGTT  550

seq1  GAATTGATTGTGATTTCATTAGTTTGTTCTTGCAATAATGAGAGCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATTGTGATTTCATTAGTTTGTTCTTGCAATAATGAGAGCACCTG  600

seq1  AGAGATAAGAGGAAAAAAAGCAATGTAATATTCTGAGACATCACAGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGAGGAAAAAAAGCAATGTAATATTCTGAGACATCACAGCTTA  650

seq1  CACTGCCCTGATGAAATCCTTTGAAATAAAACATCACTTGGTTTTCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTGATGAAATCCTTTGAAATAAAACATCACTTGGTTTTCCCAC  700

seq1  CAGGCACTTCTGTATGAAATAAAGTCACACGTCTGCTCTGGTCACTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTTCTGTATGAAATAAAGTCACACGTCTGCTCTGGTCACTCTGA  750

seq1  CAGCTCCTGTGACAGACATTTCCAAATCAACTTTCAAGAAGTCACATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGTGACAGACATTTCCAAATCAACTTTCAAGAAGTCACATCTT  800

seq1  GGTAAGTCTAAAGAGCTATATTTAGCTCTTTGGAAATAATTT-GGAGTGC  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTAAGTCTAAAGAGCTATATTTAGCTCTTTGGAAATAATTTGGGAGTGC  850

seq1  AAACTGAACAAG-AAAAAAAAAAAGCCCTCAGAATGAGCTGGATGGCTTT  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACTGAACAAGAAAAAAAAAAAAGCCCTCAGAATGAGCTGGATGGCTTT  900

seq1  -GGGGAATAAGTAATAGCCACAGAATTCTTTATTTCTAGTAACCCATGAT  947
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATAAGTAATAGCCACAGAATTCTTTATTTCTAGTAACCCATGAT  950

seq1  CTCCTGGATGGATATTTAACT-CCTTGCCCTCCCCTAAGTTCAATAATTA  996
      ||||||||||||||||||||| |||||||||||||||||||| |||| ||
seq2  CTCCTGGATGGATATTTAACTCCCTTGCCCTCCCCTAAGTTC-ATAA-TA  998

seq1  GCACGGGCTAAACTCCCTCAAGGTTGATCACAGGAATAATTTTCCTGGTT  1046
      ||||||||| |||||||   |||||||||||||||   |||||||||| |
seq2  GCACGGGCT-AACTCCCCTCAGGTTGATCACAGGA--TATTTTCCTGG-T  1044

seq1  GGCAGCAAAAAATGGCATTCATTGTATAAGAGGCCA-GAGGTCTATAATA  1095
      |||||| |||||||||||||| ||||| |||||||| ||||||||| |||
seq2  GGCAGC-AAAAATGGCATTCA-TGTAT-AGAGGCCAGGAGGTCTAT-ATA  1090

seq1  GCTCAGGTTTGTTTT  1110
      ||||||  |||||||
seq2  GCTCAG--TTGTTTT  1103

seq1: chr2_108789852_108790952
seq2: B6Ng01-258L17.g_68_1165 (reverse)

seq1  TCATCAAACCCTATGGCACAGTGAC-AGCTG-CAAATTCTTCTTTCCTGA  48
      |||||||||||||| |||||||||| ||||| ||||||||||||||   |
seq2  TCATCAAACCCTAT-GCACAGTGACAAGCTGCCAAATTCTTCTTTCTGAA  49

seq1  CTGATGGCGCTTCTGCGATGCTAATCATGTCAGAGGACAGAGCTCTGGCC  98
      ||||| |||| ||||||||||||||||||||||| |||||||||||||||
seq2  CTGAT-GCGC-TCTGCGATGCTAATCATGTCAGA-GACAGAGCTCTGGCC  96

seq1  ATGGGTTATAAACCAAAGGCAT-ATTTGAGGGATTTTATATATGTGTCCC  147
      || ||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  ATTGGTTATAAACCAAAGGCATAATTTGAGGGATTTTATATATGTGT-CC  145

seq1  AGGATCCGAAAGATCAGCTTTTACTCGGACCAACATATGCTACTCCAAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCGAAAGATCAGCTTTTACTCGGACCAACATATGCTACTCCAAAA  195

seq1  GTTTTAGAAAAGGCAGGGTTAACCATGAATGATATCGATGCTTTTGAATT  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTTAGAAAAGGCAGGGTTAACCATGAATGATATCGATGC-TTTGAATT  244

seq1  TCATGAAGCCTTCTCAGGCCAGATTTTAGCTAACTTTAAAGCCATGGATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGCCTTCTCAGGCCAGATTTTAGCTAACTTTAAAGCCATGGATT  294

seq1  CTGATTGGTTTGCACAAAACTACATGGGTAGGAAAACCAAGGTTGGATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGTTTGCACAAAACTACATGGGTAGGAAAACCAAGGTTGGATCA  344

seq1  CCTCCTCTGGAGAAGTTTAATATCTGGGGCGGATCACTGTCTCTGGGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTGGAGAAGTTTAATATCTGGGGCGGATCACTGTCTCTGGGGCA  394

seq1  CCCTTTTGGAGCCACTGGCTGTCGGCTGGTCATGGCAGCTGCCAACAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGGAGCCACTGGCTGTCGGCTGGTCATGGCAGCTGCCAACAGAC  444

seq1  TGAGGAAGGATGGAGGCCAGTATGCTTTAGTGGCTGCCTGTGCAGCTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGGATGGAGGCCAGTATGCTTTAGTGGCTGCCTGTGCAGCTGGA  494

seq1  GGACAGGGTCATGCTATGATTGTGGAAGCTTACCCCAAATGACTGCTCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGTCATGCTATGATTGTGGAAGCTTACCCCAAATGACTGCTCTA  544

seq1  GAAGGAGGCGACCGACTGATCTCTTCAGCACTTGCACTGGGCAATGCCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGCGACCGACTGATCTCTTCAGCACTTGCACTGGGCAATGCCAT  594

seq1  TTCAATGCACTACCAAGTGATACCTGCAGTTCCTAGCTCTTCTTAGGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCACTACCAAGTGATACCTGCAGTTCCTAGCTCTTCTTAGGAAA  644

seq1  CAACATTTGTGGCCTTCTCTTAAATACTTTGCAATCCAGCCTTGCCAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTGTGGCCTTCTCTTAAATACTTTGCAATCCAGCCTTGCCAGTG  694

seq1  TTCGAGGTTTTCGATAATCACAGCTTCTGCTCTCTAAGTTCCAGACTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGTTTTCGATAATCACAGCTTCTGCTCTCTAAGTTCCAGACTATT  744

seq1  ACAGATGTTTGCGCAGTTCCTGTTATTTCTTTTCACAGAGACTAATGGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTTTGCGCAGTTCCTGTTATTTCTTTTCACAGAGACTAATGGCT  794

seq1  GCTAGCCACTTGGAGAGAGAGAGGCTAGCTCAGGTTTAGAATCATCTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCACTTGGAGAGAGAGAGGCTAGCTCAGGTTTAGAATCATCTTTG  844

seq1  TAACATTTGCAGATACTCCTTATTCCTGTCTGTGTCATAGAGATAATTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCAGATACTCCTTATTCCTGTCTGTGTCATAGAGATAATTAT  894

seq1  TTTTTTCTAAAATACAAACCGATGTGCCTAAGTTAACTTACTATAGAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAAAATACAAACCGATGTGCCTAAGTTAACTTACTATAGAAAA  944

seq1  AAAAATAATCTAAACATCTCTTAAACCTGAAATGCTTAGAGACATAGATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCTAAACATCTCTTAAACCTGAAATGCTTAGAGACATAGATA  994

seq1  CCATGTTGGTTGACCTTAATAAAGTAGACATGTATTAAAAAAAAAAAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGGTTGACCTTAATAAAGTAGACATGTATTAAAAAAAAAAAAAA  1044

seq1  AGAAAATCGAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCGAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGA  1094

seq1  ATTC  1101
      ||||
seq2  ATTC  1098