BAC Information

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BAC

Clone NameB6Ng01-258M16
Chromosome2 (Build37)
Map Location 49,261,251 - 49,342,326
singlet/doubletdoublet
Overlap geneEpc2
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
Downstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258M16.bB6Ng01-258M16.g
ACCGA064138GA064139
length1,1831,163
definitionB6Ng01-258M16.b B6Ng01-258M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,261,251 - 49,262,424)(49,341,155 - 49,342,326)
sequence
gaattcatgattagctgcgatgaaaatggagacctttaagatcaaaggca
aactggaagtagaaacagcacctgaacagccattacaagcacaaactgat
ccacgagagtgttatgctaaagggcacgtgaacaaaagggatcagggcca
ttgggaatagtttgggaagtgaccaggaaaaatataaattggataaagtg
aatgttgatccccttgatattgcaatcaaatggtcccaagttcatgtata
cacaggtgttttcttttaattaaatgttacacacgtttggaagagtggtt
gtctcatggtttctttaaatgagataaatagtaattactcaaaagatgtt
ctattcgtggaactgcctggaagtgcctgctgactggctgagtaatgagt
ggagacattgttctaattgcaatgcagatcccttgggagaaagctaaatt
gagtcagaaaaaaccatatgtccctgattccctacccttccttttaacat
gacctgtcactctgggataacttctgcattagaagcaggtgttgattaag
aatgaagaattggggctggagagagagttcagttggcaaagtgcttgcct
tgcaagcatggaggatctgcacttaatcaccagcaccataaaaaagccaa
acatggtggcatagccctagtgaagggaggctgagatgggcagatactta
gaattcagcggccggctagaacagtcagcaaagctcaggtcccagtgaga
gaccctgtctcaaaaaacaaggtggacagcctttgagacatgacatctga
ggctggcctctgacgtatgcacatacattcaatcacacacacacacacac
acacacacacacacacacaaagaataaattctctaccccactgttccaga
cccactgactcagaaatggggaaaagaaatgcttgtgctttaaaatacaa
gtatgtgagattaaatgcagaatttttttaagtgcactgttctgttgggt
ttgatgaatgtttatattccatgtaaatttcaatcctaaaacaagacttc
tagcgcccagaaagcttcgctaaatgtttgccagtcaaaacacaccacac
ctcctcaagcaaccacagtctgaatccctataatatgcaatagttcctaa
agaaacctgagtcgcctaaacaatagcaaggct

gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
aaaacaaaacaaaacaaaatttaaatcatattttaaaaatcagaagagca
atttttaaataaaaatatccaaagatactgaatggaaaaagaatgttatc
ctaaaaatatttcagtcacaaatatgtacactattatcactggcaaccaa
aatttctaaagaattccaataccataaatttctgagaaggtcttgctgct
cataataaaagtaaccaaagccttcaagagatttagagatcatcaaatag
taacataaattgctattcttatctgtagtatcctcagcaatgagcaaaca
atatcctacttctaaataacacagtctataggatccatgtttagaacagc
acatttaaagtgaaataatctagacatacacgttccctcctaggaaatga
cactctaggccctataaatcattctcacccttctaagtctttttttcttt
aaagttctttttatcatttctcaaattcatatacctttcaattataagcc
cctcggtctcacagacttttgtttatttgtttatttagggttatcatgct
cacagagcttctccatcatattggaataaagcaaggcaggttagctacct
cctcctactgtctcattttctaagcttcataaacacaatctctcattcta
tcagcatgtctctccccaagcatgctcccccagaatcacaatgcccacca
tttcctctgcatcctcctgcctgccttcacctctcaaaatcctggtcctc
tcctcaagacaaacaacttctactttccactcctcattatacaaacagct
ctaggctgttattaacagtttgttccttgattttatgaaaagcttcagtt
tattaacctttccatttctctatcagacccactcattgtcctcattcttt
atccaggtctgggaataatactcttgagactatcatcttcttctccatcc
ttctgatattccattttatgtaaagcattgatcataactcaataccgtat
gacatagctctactatgctttcacatatatcaagtatttataacatatag
caacacatatatgcaaaaagcctcagatcagagtgcactaggcctagatg
aaattagctgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49261251_49262424
seq2: B6Ng01-258M16.b_50_1232

seq1  GAATTCATGATTAGCTGCGATGAAAATGGAGACCTTTAAGATCAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATTAGCTGCGATGAAAATGGAGACCTTTAAGATCAAAGGCA  50

seq1  AACTGGAAGTAGAAACAGCACCTGAACAGCCATTACAAGCACAAACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAAGTAGAAACAGCACCTGAACAGCCATTACAAGCACAAACTGAT  100

seq1  CCACGAGAGTGTTATGCTAAAGGGCACGTGAACAAAAGGGATCAGGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAGAGTGTTATGCTAAAGGGCACGTGAACAAAAGGGATCAGGGCCA  150

seq1  TTGGGAATAGTTTGGGAAGTGACCAGGAAAAATATAAATTGGATAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATAGTTTGGGAAGTGACCAGGAAAAATATAAATTGGATAAAGTG  200

seq1  AATGTTGATCCCCTTGATATTGCAATCAAATGGTCCCAAGTTCATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGATCCCCTTGATATTGCAATCAAATGGTCCCAAGTTCATGTATA  250

seq1  CACAGGTGTTTTCTTTTAATTAAATGTTACACACGTTTGGAAGAGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTTTTCTTTTAATTAAATGTTACACACGTTTGGAAGAGTGGTT  300

seq1  GTCTCATGGTTTCTTTAAATGAGATAAATAGTAATTACTCAAAAGATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGTTTCTTTAAATGAGATAAATAGTAATTACTCAAAAGATGTT  350

seq1  CTATTCGTGGAACTGCCTGGAAGTGCCTGCTGACTGGCTGAGTAATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCGTGGAACTGCCTGGAAGTGCCTGCTGACTGGCTGAGTAATGAGT  400

seq1  GGAGACATTGTTCTAATTGCAATGCAGATCCCTTGGGAGAAAGCTAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATTGTTCTAATTGCAATGCAGATCCCTTGGGAGAAAGCTAAATT  450

seq1  GAGTCAGAAAAAACCATATGTCCCTGATTCCCTACCCTTCCTTTTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAAAAAACCATATGTCCCTGATTCCCTACCCTTCCTTTTAACAT  500

seq1  GACCTGTCACTCTGGGATAACTTCTGCATTAGAAGCAGGTGTTGATTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTCACTCTGGGATAACTTCTGCATTAGAAGCAGGTGTTGATTAAG  550

seq1  AATGAAGAATTGGGGCTGGAGAGAGAGTTCAGTTGGCAAAGTGCTTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAATTGGGGCTGGAGAGAGAGTTCAGTTGGCAAAGTGCTTGCCT  600

seq1  TGCAAGCATGGAGGATCTGCACTTAATCACCAGCACCATAAAAAAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCATGGAGGATCTGCACTTAATCACCAGCACCATAAAAAAGCCAA  650

seq1  ACATGGTGGCATAGCCCTAGTGAAGGGAGGCTGAGATGGGCAGATACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCATAGCCCTAGTGAAGGGAGGCTGAGATGGGCAGATACTTA  700

seq1  GAATTCAGCGGCCGGCTAGAACAGTCAGCAAAGCTCAGGTCCCAGTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGGCCGGCTAGAACAGTCAGCAAAGCTCAGGTCCCAGTGAGA  750

seq1  GACCCTGTCTCAAAAAACAAGGTGGACAGCCTTTGAGACATGACATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCTCAAAAAACAAGGTGGACAGCCTTTGAGACATGACATCTGA  800

seq1  GGCTGGCCTCTGACGTATGCACATACATTCAATCACACACACACACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCTGACGTATGCACATACATTCAATCACACACACACACACAC  850

seq1  ACACACACACACACACACAAAGAATAAATTCTCTACCCCACTGTTCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAAAGAATAAATTCTCTACCCCACTGTTCCAGA  900

seq1  CCCACTGACTCAGAAATGGGGAAAAGAAATGCTTGTGCTTTAAAATACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGACTCAGAAATGGGGAAAAGAAATGCTTGTGCTTTAAAATACAA  950

seq1  GTATGTGAGATTAAATGCAG-ATTTTTTTAAGTGCACTGTTCTGTTGGGT  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTATGTGAGATTAAATGCAGAATTTTTTTAAGTGCACTGTTCTGTTGGGT  1000

seq1  TTGATGAATGTTTATATTCCATGTAAA-TTCCATCCT-AAACAAGACTTC  1047
      ||||||||||||||||||||||||||| ||| ||||| ||||||||||||
seq2  TTGATGAATGTTTATATTCCATGTAAATTTCAATCCTAAAACAAGACTTC  1050

seq1  TAGCGCCCAGAAAGCTTCGCTAAGTGTTTGCCCAGTC-AAACACA-CACA  1095
      ||||||||||||||||||||||| |||||| |||||| ||||||| ||||
seq2  TAGCGCCCAGAAAGCTTCGCTAAATGTTTG-CCAGTCAAAACACACCACA  1099

seq1  CTCTCAAAAGCAACCACAGTCCTGATTCCCTAT-ATATGC-ATAG-TCCT  1142
      |   |  ||||||||||||| |||| ||||||| |||||| |||| ||||
seq2  CCTCCTCAAGCAACCACAGT-CTGAATCCCTATAATATGCAATAGTTCCT  1148

seq1  -AAGATA-CTGAGGTCGCCT-AACAATAGC-AGGCT  1174
       |||| | |||| ||||||| ||||||||| |||||
seq2  AAAGAAACCTGA-GTCGCCTAAACAATAGCAAGGCT  1183


seq1: chr2_49341155_49342326
seq2: B6Ng01-258M16.g_67_1229 (reverse)

seq1  CATCAGCTAATTTTCATACTA-GCCTAGTGCACTTCTGTATCTTGAAGCT  49
      |||||||||| |||||| ||| ||||||||||| |||| ||| ||| || 
seq2  CATCAGCTAA-TTTCAT-CTAGGCCTAGTGCAC-TCTG-ATC-TGAGGC-  44

seq1  TTTTTTGCATATATGTG-TGCTATATG-TATAAATACTTGAATATATGTG  97
       |||||||||||||||| ||||||||| |||||||||||| |||||||||
seq2  -TTTTTGCATATATGTGTTGCTATATGTTATAAATACTTG-ATATATGTG  92

seq1  AAAAGCATAAGTAGAGCTTAATGTCATACGGTATTGAGTTATTGATCAAT  147
       ||||||| |||||||||  ||||||||||||||||||||| ||||||||
seq2  -AAAGCAT-AGTAGAGCT--ATGTCATACGGTATTGAGTTA-TGATCAAT  137

seq1  GCTTTTACATAAAATGGAATATCAGAAGAATGGAG-AGAAGATGAATAGT  196
      || ||||||||||||||||||||||||| |||||| |||||||| |||||
seq2  GC-TTTACATAAAATGGAATATCAGAAGGATGGAGAAGAAGATG-ATAGT  185

seq1  CTCAAGAGTA-TATT-CCAGACCTGGATAAAGAATGAGGACAATGAGTGG  244
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGTATTATTCCCAGACCTGGATAAAGAATGAGGACAATGAGTGG  235

seq1  GTCTGATAGAGAAATGGAAAGGTTAATAAACTGAAGCTTTTCATAAAATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATAGAGAAATGGAAAGGTTAATAAACTGAAGCTTTTCATAAAATC  285

seq1  AAGGAACAAACTGTTAATAACAGCCTAGAGCTGTTTGTATAATGAGGAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAAACTGTTAATAACAGCCTAGAGCTGTTTGTATAATGAGGAGT  335

seq1  GGAAAGTAGAAGTTGTTTGTCTTGAGGAGAGGACCAGGATTTTGAGAGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAGAAGTTGTTTGTCTTGAGGAGAGGACCAGGATTTTGAGAGGT  385

seq1  GAAGGCAGGCAGGAGGATGCAGAGGAAATGGTGGGCATTGTGATTCTGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGCAGGAGGATGCAGAGGAAATGGTGGGCATTGTGATTCTGGG  435

seq1  GGAGCATGCTTGGGGAGAGACATGCTGATAGAATGAGAGATTGTGTTTAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGCTTGGGGAGAGACATGCTGATAGAATGAGAGATTGTGTTTAT  485

seq1  GAAGCTTAGAAAATGAGACAGTAGGAGGAGGTAGCTAACCTGCCTTGCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTAGAAAATGAGACAGTAGGAGGAGGTAGCTAACCTGCCTTGCTT  535

seq1  TATTCCAATATGATGGAGAAGCTCTGTGAGCATGATAACCCTAAATAAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAATATGATGGAGAAGCTCTGTGAGCATGATAACCCTAAATAAAC  585

seq1  AAATAAACAAAAGTCTGTGAGACCGAGGGGCTTATAATTGAAAGGTATAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAAAAGTCTGTGAGACCGAGGGGCTTATAATTGAAAGGTATAT  635

seq1  GAATTTGAGAAATGATAAAAAGAACTTTAAAGAAAAAAAGACTTAGAAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGAAATGATAAAAAGAACTTTAAAGAAAAAAAGACTTAGAAGG  685

seq1  GTGAGAATGATTTATAGGGCCTAGAGTGTCATTTCCTAGGAGGGAACGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATGATTTATAGGGCCTAGAGTGTCATTTCCTAGGAGGGAACGTG  735

seq1  TATGTCTAGATTATTTCACTTTAAATGTGCTGTTCTAAACATGGATCCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTAGATTATTTCACTTTAAATGTGCTGTTCTAAACATGGATCCTA  785

seq1  TAGACTGTGTTATTTAGAAGTAGGATATTGTTTGCTCATTGCTGAGGATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGTTATTTAGAAGTAGGATATTGTTTGCTCATTGCTGAGGATA  835

seq1  CTACAGATAAGAATAGCAATTTATGTTACTATTTGATGATCTCTAAATCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATAAGAATAGCAATTTATGTTACTATTTGATGATCTCTAAATCT  885

seq1  CTTGAAGGCTTTGGTTACTTTTATTATGAGCAGCAAGACCTTCTCAGAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGCTTTGGTTACTTTTATTATGAGCAGCAAGACCTTCTCAGAAA  935

seq1  TTTATGGTATTGGAATTCTTTAGAAATTTTGGTTGCCAGTGATAATAGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTATTGGAATTCTTTAGAAATTTTGGTTGCCAGTGATAATAGTG  985

seq1  TACATATTTGTGACTGAAATATTTTTAGGATAACATTCTTTTTCCATTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTGTGACTGAAATATTTTTAGGATAACATTCTTTTTCCATTCA  1035

seq1  GTATCTTTGGATATTTTTATTTAAAAATTGCTCTTCTGATTTTTAAAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTGGATATTTTTATTTAAAAATTGCTCTTCTGATTTTTAAAATA  1085

seq1  TGATTTAAATTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAATTTTGTTTTGTTTTGTTTTGTTTTTTTGAGACAGGGTTTCT  1135

seq1  CTGTATAGCCCTGGCTGTCCTGGAATTC  1172
      ||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAATTC  1163


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