BAC Information

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BAC

Clone NameB6Ng01-259D04
Chromosome2 (Build37)
Map Location 55,292,200 - 55,293,328
singlet/doubletsinglet
Overlap geneKcnj3
Upstream geneLOC100042878, Galnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259D04.g
ACCGA064444
length1,113
definitionB6Ng01-259D04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatagaaggacgagtaggaagcttcatattatccaatgtttgaa
agtttgaaaggcgctaccctgttctcagtgtctttgaaaacactgaaagt
agattattattattgaataaatctatatttgtggtttttgtttttcattt
tctgagtagaaaatgttacttaaattataagaaaatatatgtgtactata
attatcatgtttcaataatatactggcattggcatttgttgacatgagaa
tgcagtatattgtgtgttgaatacacatgactatagcatctatagtgtta
aaatggtttacaatagcaaactggatacccgaactgataattagtaagca
tatatgctattcatagcaagttttaaaacttttagcctttatataatttt
tctcctatatatcatagctgactgttttaggtcacttcaagtgtctctta
cagaaaataagggtcactcattaaagcaaacatcccctctaattttgctt
agtattattattttctcagtagcacatgagttcttttccatattgtataa
gaaaattatttaaaaacctataagtatttattataattaccatgcctgcc
agaaaaacaaatttaaaacaagctacattaacttcattataatttctgtc
aatatacaataaatgtcacattttaatactttcagtttctaataaatcat
aagacaagtacctcattactgctctattatttgagtgtgatattgatttt
ataaccttgtgttcatatagcaccttgctgaaacattataatattttact
tcttaattcaagatactgttctggtaatagtagtaaatggaagtgcatag
taattctttatgagtatatgcacactgcagagacccaaaacttccattca
ttttccacatctatatcactggtctctagtttaattttaatcgtatcttg
gatttttaaaataaaattgacatgtttgcacactaaaataagttgtatgt
ggaaacacaccagttttatacataacttatttgtttgaaaaatagatgca
aaaacttgattcttgtgagtagataactactctacgagagtttccaagcg
atttccacacaca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55292200_55293328
seq2: B6Ng01-259D04.g_65_1177 (reverse)

seq1  TGTGTGTGGATATCGCTTGGGAACTCTCGTTAAGAGTAGTTTATCCTACT  50
      |||||||||| ||||||||| |||||||||  ||||||| |||| |||||
seq2  TGTGTGTGGAAATCGCTTGGAAACTCTCGT--AGAGTAG-TTAT-CTACT  46

seq1  CACAAGAATTCAAGTTTTTGCCATTCTTAATTTTTCAAACAAATAAGGTT  100
      |||||||| ||||||||||||   |||  ||||||||||||||||| |||
seq2  CACAAGAA-TCAAGTTTTTGC--ATCT--ATTTTTCAAACAAATAA-GTT  90

seq1  ATGTAATAAAACTGGTGTGTTTCCACATACAACTTATTTTAGTTGTTGCA  150
      |||| ||||||||||||||||||||||||||||||||||||||   ||||
seq2  ATGT-ATAAAACTGGTGTGTTTCCACATACAACTTATTTTAGT--GTGCA  137

seq1  AACATTGTCAATTTTTATTTTTAAAAATCCAAGATACGATTAAAATTAAA  200
      |||| ||||||||||   ||||||||||||||||||||||||||||||||
seq2  AACA-TGTCAATTTT--ATTTTAAAAATCCAAGATACGATTAAAATTAAA  184

seq1  CTAGAGACCAGTGATATAGATGTGGAAAATGAATGGAAGTTTTGGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACCAGTGATATAGATGTGGAAAATGAATGGAAGTTTTGGGTCTC  234

seq1  TGCAGTGTGCATATACTCATAAAGAATTACTATGCACTTCCATTTACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGCATATACTCATAAAGAATTACTATGCACTTCCATTTACTAC  284

seq1  TATTACCAGAACAGTATCTTGAATTAAGAAGTAAAATATTATAATGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCAGAACAGTATCTTGAATTAAGAAGTAAAATATTATAATGTTTC  334

seq1  AGCAAGGTGCTATATGAACACAAGGTTATAAAATCAATATCACACTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTGCTATATGAACACAAGGTTATAAAATCAATATCACACTCAAA  384

seq1  TAATAGAGCAGTAATGAGGTACTTGTCTTATGATTTATTAGAAACTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGCAGTAATGAGGTACTTGTCTTATGATTTATTAGAAACTGAAA  434

seq1  GTATTAAAATGTGACATTTATTGTATATTGACAGAAATTATAATGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAATGTGACATTTATTGTATATTGACAGAAATTATAATGAAGTT  484

seq1  AATGTAGCTTGTTTTAAATTTGTTTTTCTGGCAGGCATGGTAATTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCTTGTTTTAAATTTGTTTTTCTGGCAGGCATGGTAATTATAAT  534

seq1  AAATACTTATAGGTTTTTAAATAATTTTCTTATACAATATGGAAAAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTATAGGTTTTTAAATAATTTTCTTATACAATATGGAAAAGAAC  584

seq1  TCATGTGCTACTGAGAAAATAATAATACTAAGCAAAATTAGAGGGGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTACTGAGAAAATAATAATACTAAGCAAAATTAGAGGGGATGT  634

seq1  TTGCTTTAATGAGTGACCCTTATTTTCTGTAAGAGACACTTGAAGTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAATGAGTGACCCTTATTTTCTGTAAGAGACACTTGAAGTGACC  684

seq1  TAAAACAGTCAGCTATGATATATAGGAGAAAAATTATATAAAGGCTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTCAGCTATGATATATAGGAGAAAAATTATATAAAGGCTAAAA  734

seq1  GTTTTAAAACTTGCTATGAATAGCATATATGCTTACTAATTATCAGTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAACTTGCTATGAATAGCATATATGCTTACTAATTATCAGTTCG  784

seq1  GGTATCCAGTTTGCTATTGTAAACCATTTTAACACTATAGATGCTATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCAGTTTGCTATTGTAAACCATTTTAACACTATAGATGCTATAGT  834

seq1  CATGTGTATTCAACACACAATATACTGCATTCTCATGTCAACAAATGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATTCAACACACAATATACTGCATTCTCATGTCAACAAATGCCA  884

seq1  ATGCCAGTATATTATTGAAACATGATAATTATAGTACACATATATTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTATATTATTGAAACATGATAATTATAGTACACATATATTTTCT  934

seq1  TATAATTTAAGTAACATTTTCTACTCAGAAAATGAAAAACAAAAACCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTAAGTAACATTTTCTACTCAGAAAATGAAAAACAAAAACCACA  984

seq1  AATATAGATTTATTCAATAATAATAATCTACTTTCAGTGTTTTCAAAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATTTATTCAATAATAATAATCTACTTTCAGTGTTTTCAAAGAC  1034

seq1  ACTGAGAACAGGGTAGCGCCTTTCAAACTTTCAAACATTGGATAATATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAACAGGGTAGCGCCTTTCAAACTTTCAAACATTGGATAATATGA  1084

seq1  AGCTTCCTACTCGTCCTTCTATGGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  AGCTTCCTACTCGTCCTTCTATGGAATTC  1113


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