BAC Information

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BAC

Clone NameB6Ng01-259D08
Chromosome2 (Build37)
Map Location 68,190,924 - 68,347,688
singlet/doubletdoublet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259D08.bB6Ng01-259D08.g
ACCGA064451GA064452
length1,2071,107
definitionB6Ng01-259D08.b B6Ng01-259D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,346,492 - 68,347,688)(68,190,924 - 68,192,028)
sequence
gaattcccagagggatcttggaaaaaaatgtttaaaccattttttcatct
ttaagagagagagagagagaatatatcaaagttgttttatgtcctatatt
tcttggctcaaatttaccctgaaaatttcatggtgagaactgttaatgac
aagataactcatccaggtgaacggagtttaaagtaagtcttttagcaatg
gtaaactttccagagtgggaaagtgagctccagggaagtttcagtgtcct
tgttgtccatgatttgtttttatcctaagaactgattgtgactttttttt
aaaacgaagtagtaacatatactccattctaattgtatattcattcaaat
aaagtcatgacagccaatcaagtagccaagtcagttcttacacgatcatt
ttctcttactgggacactatatcaaaggttctcctataagctatgagcca
gaaatcccctgtccaacaagatacagtctgagagcctcatgagaaagacg
gtacctctcaatgatgaaccctgggaactggctgaccttagaccactttt
agcctggagcaaaggacagaagcaagatttccaggatgctagtccaaacg
cagatcaccccagtgaagacacactggtgactcaaaagacaaggacagct
gggtgtatggtatgcatctataataccatcactcagaaagctgaagaaac
acagccataaatttgatgccagcctgtgccacagagaaatacattttctc
aaaataaaaatgaatgaatgaatgaatgacagaaaggaaggatggaggga
ggaaggcagggaaggagggaaacaaatctagaaacaaatttatacagtgc
taaaggaactgtgagggctatttaatgggtatattttattaaaatgctaa
cagcatttattttctagtcttcctgtgttatgtattttcttcttttcaat
gctaatgctccgtttagttaaataagggagcatatttcaaatgaagccag
agcttttactgagcacttcttgctttttgtgaacaacataattatatgca
ggatctcagtaaacatgcctttgctttttctggagaagtggtgtggtctt
catggcagctaagcttgtacatggtggttgaacacttgggagttcatttc
ttggcagtcaaggaaggctagttctagccttgcgcgagcaagggttgcct
tatactt
gaattcctacccctgacatcctatgaacgtgcagccataatgacgcagag
cgtatatacggccttggaaaaaaaaagatgtcatgacctgggggataagt
aggttcctgtacttgcgtttttaatgaagaagctgacaggtgccgcctaa
agcaggtagtcaccattaaacctcagcaggatgggagggaggcaacaagg
tgtgcctcgtaatataatacacccagaatacagcctcactcctaagaagc
ctgtcaaaacacgctggtcagtgcactcacgaagaaatatcagctaagtc
tttatggagacagtctacggaataaccgacctggattcttcaaaagtgca
gcaactacaagagacgcgctgctccatatgaaaggaaaccaagcagctaa
aggaattgcagatgagaacctgtaggggaactgacaacactggaaaatca
acaactttgatgaagagcggagaagtgcataacagaacatagagattagt
gttagcatcttgcctttggtcactgtgctgctgtggcataggagactgtc
cttgtgtgggagatacacaaaggtgcagctgtgggcaaaggacgccttgt
gtccttgtgtgctatgtattccgaactgttccagggaaagagcagaaaaa
gaaaatatttgcagaaagttgtgagatcttcttctaagtttcttgcaagt
ttgaaattatttcaaaacagaaagtgaaagaatatataaggcaccacaga
atttaaaaatgtgaacttggtttttcttttcaaaaaaagatgtatttatt
ttatgtatgtgagtataccgtcactctcttcagacacacctgaagaggac
atcagatcccattacggatggttgtgagccaccatgcggtttctgggaat
tgaactctggaagagcagccagcgcttaaacactgaaccatctctccagc
ccaaactgtagttattttctacctagtgatttcgaaacacaaactagaag
ccaaatagggctaaaagttttaagtctttaaacttaccaaaaaccatcta
gcagattgataaagaaattcgttactgtttgtgcccaccttgcatggcct
gacttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_68346492_68347688
seq2: B6Ng01-259D08.b_44_1250 (reverse)

seq1  AAGTAT-AGGCAACCCTTGCTCTGCAGCCAAAGGCTAG-ACTAGCCTTTC  48
      |||||| |||||||||||||||    ||  |||||||| ||||||||| |
seq2  AAGTATAAGGCAACCCTTGCTC----GCGCAAGGCTAGAACTAGCCTTCC  46

seq1  CTGACTGC--AGAAATGAACTCC--AGTGTTCAA-CACCATGTACAGCCT  93
       |||||||  |||||||||||||  ||||||||| |||||||||||  ||
seq2  TTGACTGCCAAGAAATGAACTCCCAAGTGTTCAACCACCATGTACAAGCT  96

seq1  TAGCTG-CATGAAGGACCACACAACTTCTCCAGGAAAAGC-AAGGCATGT  141
      |||||| |||||| |||||||| |||||||||| |||||| |||||||||
seq2  TAGCTGCCATGAA-GACCACACCACTTCTCCAGAAAAAGCAAAGGCATGT  145

seq1  CTACTGAGATCCTGCATATAATTATGTTG-TCAC-AAAAGCAAG-AGTGC  188
       |||||||||||||||||||||||||||| |||| ||||||||| |||||
seq2  TTACTGAGATCCTGCATATAATTATGTTGTTCACAAAAAGCAAGAAGTGC  195

seq1  TCAGTAAAGGCTCTGGCTTCATTTG-AATATGCTCCCTTATTTAACTAAA  237
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGTAAAAGCTCTGGCTTCATTTGAAATATGCTCCCTTATTTAACTAAA  245

seq1  CGGAGCATTAGCATTG-AAAGAAG-AAATACATAACACAGGGAGACTAGA  285
      |||||||||||||||| ||||||| |||||||||||||||| ||||||||
seq2  CGGAGCATTAGCATTGAAAAGAAGAAAATACATAACACAGGAAGACTAGA  295

seq1  AAATAAAATGCTGTTAGCATTTTAATAAAATATA-CCATTAAATAGCCCT  334
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAT-AAATGCTGTTAGCATTTTAATAAAATATACCCATTAAATAGCCCT  344

seq1  CACAGTTCCTTTAGCACTGTATAAATTTGTTTCTAGATTTGTTTCCCTCC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCCTTTAGCACTGTATAAATTTGTTTCTAGATTTGTTTCCCTCC  394

seq1  TTCCCTGCCTTCCTCCCTCCATCCTTCCTTTCTGTCATTCATTCATTCAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCCTTCCTCCCTCCATCCTTCCTTTCTGTCATTCATTCATTCAT  444

seq1  TCATTTTTATTTTGAGAAAATGTATTTCTCTGTGGCACAGGCTGGCATCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTATTTTGAGAAAATGTATTTCTCTGTGGCACAGGCTGGCATCA  494

seq1  AATTTATGGCTGTGTTTCTTCAGCTTTCTGAGTGATGGTATTATAGATGC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGGCTGTGTTTCTTCAGCTTTCTGAGTGATGGTATTATAGATGC  544

seq1  ATACCATACACCCAGCTGTCCTTGTCTTTTGAGTCACCAGTGTGTCTTCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATACACCCAGCTGTCCTTGTCTTTTGAGTCACCAGTGTGTCTTCA  594

seq1  CTGGGGTGATCTGCGTTTGGACTAGCATCCTGGAAATCTTGCTTCTGTCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGATCTGCGTTTGGACTAGCATCCTGGAAATCTTGCTTCTGTCC  644

seq1  TTTGCTCCAGGCTAAAAGTGGTCTAAGGTCAGCCAGTTCCCAGGGTTCAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCAGGCTAAAAGTGGTCTAAGGTCAGCCAGTTCCCAGGGTTCAT  694

seq1  CATTGAGAGGTACCGTCTTTCTCATGAGGCTCTCAGACTGTATCTTGTTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAGGTACCGTCTTTCTCATGAGGCTCTCAGACTGTATCTTGTTG  744

seq1  GACAGGGGATTTCTGGCTCATAGCTTATAGGAGAACCTTTGATATAGTGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGATTTCTGGCTCATAGCTTATAGGAGAACCTTTGATATAGTGT  794

seq1  CCCAGTAAGAGAAAATGATCGTGTAAGAACTGACTTGGCTACTTGATTGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAGAGAAAATGATCGTGTAAGAACTGACTTGGCTACTTGATTGG  844

seq1  CTGTCATGACTTTATTTGAATGAATATACAATTAGAATGGAGTATATGTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGACTTTATTTGAATGAATATACAATTAGAATGGAGTATATGTT  894

seq1  ACTACTTCGTTTTAAAAAAAAGTCACAATCAGTTCTTAGGATAAAAACAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCGTTTTAAAAAAAAGTCACAATCAGTTCTTAGGATAAAAACAA  944

seq1  ATCATGGACAACAAGGACACTGAAACTTCCCTGGAGCTCACTTTCCCACT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACAACAAGGACACTGAAACTTCCCTGGAGCTCACTTTCCCACT  994

seq1  CTGGAAAGTTTACCATTGCTAAAAGACTTACTTTAAACTCCGTTCACCTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGTTTACCATTGCTAAAAGACTTACTTTAAACTCCGTTCACCTG  1044

seq1  GATGAGTTATCTTGTCATTAACAGTTCTCACCATGAAATTTTCAGGGTAA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTATCTTGTCATTAACAGTTCTCACCATGAAATTTTCAGGGTAA  1094

seq1  ATTTGAGCCAAGAAATATAGGACATAAAACAACTTTGATATATTCTCTCT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCCAAGAAATATAGGACATAAAACAACTTTGATATATTCTCTCT  1144

seq1  CTCTCTCTCTTAAAGATGAAAAAATGGTTTAAACATTTTTTTCCAAGATC  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTAAAGATGAAAAAATGGTTTAAACATTTTTTTCCAAGATC  1194

seq1  CCTCTGGGAATTC  1197
      |||||||||||||
seq2  CCTCTGGGAATTC  1207

seq1: chr2_68190924_68192028
seq2: B6Ng01-259D08.g_66_1172

seq1  GAATTCCTACCCCTGACATCCTATGAACGTGCAGCCATAATGACGCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCCCTGACATCCTATGAACGTGCAGCCATAATGACGCAGAG  50

seq1  CGTATATACGGCCTTGGAAAAAAAAAGATGTCATGACCTGGGGGATAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATATACGGCCTTGGAAAAAAAAAGATGTCATGACCTGGGGGATAAGT  100

seq1  AGGTTCCTGTACTTGCGTTTTTAATGAAGAAGCTGACAGGTGCCGCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTGTACTTGCGTTTTTAATGAAGAAGCTGACAGGTGCCGCCTAA  150

seq1  AGCAGGTAGTCACCATTAAACCTCAGCAGGATGGGAGGGAGGCAACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAGTCACCATTAAACCTCAGCAGGATGGGAGGGAGGCAACAAGG  200

seq1  TGTGCCTCGTAATATAATACACCCAGAATACAGCCTCACTCCTAAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCGTAATATAATACACCCAGAATACAGCCTCACTCCTAAGAAGC  250

seq1  CTGTCAAAACACGCTGGTCAGTGCACTCACGAAGAAATATCAGCTAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAAACACGCTGGTCAGTGCACTCACGAAGAAATATCAGCTAAGTC  300

seq1  TTTATGGAGACAGTCTACGGAATAACCGACCTGGATTCTTCAAAAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAGACAGTCTACGGAATAACCGACCTGGATTCTTCAAAAGTGCA  350

seq1  GCAACTACAAGAGACGCGCTGCTCCATATGAAAGGAAACCAAGCAGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTACAAGAGACGCGCTGCTCCATATGAAAGGAAACCAAGCAGCTAA  400

seq1  AGGAATTGCAGATGAGAACCTGTAGGGGAACTGACAACACTGGAAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGCAGATGAGAACCTGTAGGGGAACTGACAACACTGGAAAATCA  450

seq1  ACAACTTTGATGAAGAGCGGAGAAGTGCATAACAGAACATAGAGATTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTGATGAAGAGCGGAGAAGTGCATAACAGAACATAGAGATTAGT  500

seq1  GTTAGCATCTTGCCTTTGGTCACTGTGCTGCTGTGGCATAGGAGACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATCTTGCCTTTGGTCACTGTGCTGCTGTGGCATAGGAGACTGTC  550

seq1  CTTGTGTGGGAGATACACAAAGGTGCAGCTGTGGGCAAAGGACGCCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGGGAGATACACAAAGGTGCAGCTGTGGGCAAAGGACGCCTTGT  600

seq1  GTCCTTGTGTGCTATGTATTCCGAACTGTTCCAGGGAAAGAGCAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTGTGCTATGTATTCCGAACTGTTCCAGGGAAAGAGCAGAAAAA  650

seq1  GAAAATATTTGCAGAAAGTTGTGAGATCTTCTTCTAAGTTTCTTGCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTGCAGAAAGTTGTGAGATCTTCTTCTAAGTTTCTTGCAAGT  700

seq1  TTGAAATTATTTCAAAACAGAAAGTGAAAGAATATATAAGGCACCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTATTTCAAAACAGAAAGTGAAAGAATATATAAGGCACCACAGA  750

seq1  ATTTAAAAATGTGAACTTGGTTTTTCTTTTCAAAAAAAGATGTATTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATGTGAACTTGGTTTTTCTTTTCAAAAAAAGATGTATTTATT  800

seq1  TTATGTATGTGAGTATACCGTCACTCTCTTCAGACACACCTGAAGAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGTGAGTATACCGTCACTCTCTTCAGACACACCTGAAGAGGAC  850

seq1  ATCAGATCCCATTACGGATGGTTGTGAGCCACCATGCGGTTTCTGGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCCATTACGGATGGTTGTGAGCCACCATGCGGTTTCTGGGAAT  900

seq1  TGAACTCTGGAAGAGCAGCCAGCGCTTAAACACTGAACCATCTCTCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAACTCTGGAAGAGCAGCCAGCGCTTAAACACTGAACCATCTCTCCAG-  949

seq1  CCCAAACTGTAGTTA-TTTCTACCTAGTGATTTCGAAACACAAACTAGAA  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAAACTGTAGTTATTTTCTACCTAGTGATTTCGAAACACAAACTAGAA  999

seq1  G-CAAATAGGGCTAAAAGTTTTAAGTCTTTAAACT--ACAAAAACAATCT  1046
      | |||||||||||||||||||||||||||||||||   ||||||| ||| 
seq2  GCCAAATAGGGCTAAAAGTTTTAAGTCTTTAAACTTACCAAAAACCATC-  1048

seq1  TAGCAGATTGATAAAAGAAATTCG-TAATGTTTGTGCCCACCTTGGCAGT  1095
      |||||||||||| ||||||||||| || |||||||||||||||||   | 
seq2  TAGCAGATTGAT-AAAGAAATTCGTTACTGTTTGTGCCCACCTTGCATGG  1097

seq1  GCTGACTTCC  1105
       |||||||||
seq2  CCTGACTTCC  1107