BAC Information

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BAC

Clone NameB6Ng01-259E16
Chromosome2 (Build37)
Map Location 114,639,711 - 114,786,536
singlet/doubletdoublet
Overlap geneLOC100043222
Upstream geneScg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259E16.bB6Ng01-259E16.g
ACCGA064508GA064509
length1,1231,123
definitionB6Ng01-259E16.b B6Ng01-259E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,639,711 - 114,640,837)(114,785,404 - 114,786,536)
sequence
gaattcagatatacaatgaaaagacaattttaaatagctgtcttgagtgg
gtaatttatgcatatatttagaagtaattattaagggttttactaaattc
ttgttaaaaataaaagaaaggactgctaaataaactaggaaatctgtctg
gtttgcttgggcatccctttgctcgcacatctctaggtcagagacttctg
tctggcaagggtcaagtttcactgtgagtcttgtctgtaaaggaagtttt
aacggttcaatacaagtatacgagaaaactctaaatggtatgagaatgct
gtgtgtaagtgtggtgaactttgtttctaagtgaatattaacagaagtga
ataattaatgtgtgtagtgtttttcctcatgaataatgcaatagtgacag
tgcacattacaggcagcacatggaatattatctttgaagtagagaagcac
aaaacttgggaaggttggtgagcaactcgaggtcactcagcaatgcctcc
tgcatcacaaagcttgagcggcagcctctagtacttacttgtagtgatca
caaaaatgaacttgaaaaaaataactctgtcctatccaagaaagagaaga
caaacagcccagaaaggatgcatgtgtctgtccacagtctccacagaaaa
atctgtctttctcaggaagctccggattataggatgacatctttggggta
ttctaaagccttcctgagtggagtagagttttacttttattttaggatct
acagctctggaagaaaggtgtgaatctaatctccaccatgaataaatgac
agctatctattgcacaagagttttcaagggaagcatgttggggatacatg
tctatgagattctaggtccctgaaggagccgtgaaataaatactccccac
aacaacctctttccccctaaataccttccctattgcattttggcactcta
gtcttagaacattattttcctcttttttgttcaagtcctcttgattagct
gagtctggtcatctatgattatctggatactttctttgactagacagttt
acttcctgagcatctcagctctttattgcattattgtattttttttaaca
caatttaaaaaataagtttgcag

gaattccttattacagcaagcacatcctcaaaatagaacagagaaaagaa
tgtgagtgactattgcctccttgtctctgtcttgttgcaatccagtctca
taatattgtactgaatgtgcaaaatatcatgatttgtaaggataatagct
ttggaattttgttattatagaaatatttataggatcatgctggccccagc
accactgtaaaaatgcaatttcaccaaagagtatgaaaaccacagtagag
cagagagccatataggttatatttattattcacatctgacaaaaaggaac
tgaattctgttaggttttgctgatgtttagacaattcactacaaagtaca
gaccaccttcctcagttttctacctgggctgcagctagccttgttaacta
tcattacagctgaaggggtgaaacatgtgtgaaagaaaaggggattgtgt
catttgttagcctgtggttaaatgtggttcactgggtctcttcctagtaa
gccctgttcctctactcatgggcatgtgcaggatttcttcaaccagaact
cccaggatttcctctgccaatacttggcttaatgttatgattatgagctg
gtgacattagaaagagcaaatgagacgttttctcataagtactagctcca
ggtttccatttaggaaagagtaagacaacaggatgtttatgatggtgaat
ctgaagccagatcatcccggtataagctaaaattgtgctgtttgtttgtc
accaaaacctctatttatcttactttttcttccataaaatgaaggggata
agaatagcatatacctcacagatactacataggattaagtgaatataatc
aaagcttacagacaaagtgcaagacagaaacagtggcaattaatgttcat
tatttttaagaaaatatagatggtgcacttagaaattaaatactttatat
atggtaaatgctcattatggatatgaaatgtatatttataaaatgttaaa
atacgttttgaaataaagcactaacaatacatttaaatatttaaagttta
ataatatagaaaaactatttctagattgaataaatgttttttttttataa
tcagaaaaaggtatggttattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114639711_114640837
seq2: B6Ng01-259E16.b_43_1165

seq1  GAATTCAGATATACAATGAAAAGACAATTTTAAATAGCTGTCTTGAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATACAATGAAAAGACAATTTTAAATAGCTGTCTTGAGTGG  50

seq1  GTAATTTATGCATATATTTAGAAGTAATTATTAAGGGTTTTACTAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTATGCATATATTTAGAAGTAATTATTAAGGGTTTTACTAAATTC  100

seq1  TTGTTAAAAATAAAAGAAAGGACTGCTAAATAAACTAGGAAATCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAAATAAAAGAAAGGACTGCTAAATAAACTAGGAAATCTGTCTG  150

seq1  GTTTGCTTGGGCATCCCTTTGCTCGCACATCTCTAGGTCAGAGACTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTGGGCATCCCTTTGCTCGCACATCTCTAGGTCAGAGACTTCTG  200

seq1  TCTGGCAAGGGTCAAGTTTCACTGTGAGTCTTGTCTGTAAAGGAAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAGGGTCAAGTTTCACTGTGAGTCTTGTCTGTAAAGGAAGTTTT  250

seq1  AACGGTTCAATACAAGTATACGAGAAAACTCTAAATGGTATGAGAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTTCAATACAAGTATACGAGAAAACTCTAAATGGTATGAGAATGCT  300

seq1  GTGTGTAAGTGTGGTGAACTTTGTTTCTAAGTGAATATTAACAGAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAAGTGTGGTGAACTTTGTTTCTAAGTGAATATTAACAGAAGTGA  350

seq1  ATAATTAATGTGTGTAGTGTTTTTCCTCATGAATAATGCAATAGTGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATGTGTGTAGTGTTTTTCCTCATGAATAATGCAATAGTGACAG  400

seq1  TGCACATTACAGGCAGCACATGGAATATTATCTTTGAAGTAGAGAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTACAGGCAGCACATGGAATATTATCTTTGAAGTAGAGAAGCAC  450

seq1  AAAACTTGGGAAGGTTGGTGAGCAACTCGAGGTCACTCAGCAATGCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGGAAGGTTGGTGAGCAACTCGAGGTCACTCAGCAATGCCTCC  500

seq1  TGCATCACAAAGCTTGAGCGGCAGCCTCTAGTACTTACTTGTAGTGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACAAAGCTTGAGCGGCAGCCTCTAGTACTTACTTGTAGTGATCA  550

seq1  CAAAAATGAACTTGAAAAAAATAACTCTGTCCTATCCAAGAAAGAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGAACTTGAAAAAAATAACTCTGTCCTATCCAAGAAAGAGAAGA  600

seq1  CAAACAGCCCAGAAAGGATGCATGTGTCTGTCCACAGTCTCCACAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCCCAGAAAGGATGCATGTGTCTGTCCACAGTCTCCACAGAAAA  650

seq1  ATCTGTCTTTCTCAGGAAGCTCCGGATTATAGGATGACATCTTTGGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTTCTCAGGAAGCTCCGGATTATAGGATGACATCTTTGGGGTA  700

seq1  TTCTAAAGCCTTCCTGAGTGGAGTAGAGTTTTACTTTTATTTTAGGATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGCCTTCCTGAGTGGAGTAGAGTTTTACTTTTATTTTAGGATCT  750

seq1  ACAGCTCTGGAAGAAAGGTGTGAATCTAATCTCCACCATGAATAAATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTGGAAGAAAGGTGTGAATCTAATCTCCACCATGAATAAATGAC  800

seq1  AGCTATCTATTGCACAAGAGTTTTCAAGGGAAGCATGTTGGGGATACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTATTGCACAAGAGTTTTCAAGGGAAGCATGTTGGGGATACATG  850

seq1  TCTATGAGATTCTAGGTCCCTGAAGGAGCCGTGAAATAAATACTCCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGATTCTAGGTCCCTGAAGGAGCCGTGAAATAAATACTCCCCAC  900

seq1  AACAACCTCTTTCCCCCTAAATACCTTCCCTATTGCATTTTGGCACTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTCTTTCCCCCTAAATACCTTCCCTATTGCATTTTGGCACTCTA  950

seq1  GTCTTAGAACATTATTTTCCTC-TTTTTGTTCAAGTCCTCCTTGATTAGC  999
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GTCTTAGAACATTATTTTCCTCTTTTTTGTTCAAGTCCT-CTTGATTAGC  999

seq1  TGAGTCTGGTCATCTATGATTATCTGGATAACTTTCTTTGACTAGACAAG  1049
      ||||||||||||||||||||||||||||| ||||||||||||||||||  
seq2  TGAGTCTGGTCATCTATGATTATCTGGAT-ACTTTCTTTGACTAGACA--  1046

seq1  TTTTACTTCCCTGAGCATTCTTCAGCTCTTTTATGCATTA-TGTA-TTTT  1097
       ||||||| |||||||||   ||||||||||  ||||||| |||| ||||
seq2  GTTTACTT-CCTGAGCAT--CTCAGCTCTTTATTGCATTATTGTATTTTT  1093

seq1  TTTACCACAATTT-AAAAATAAGTTTTGCAG  1127
      |||| |||||||| ||||||||| |||||||
seq2  TTTAACACAATTTAAAAAATAAG-TTTGCAG  1123


seq1: chr2_114785404_114786536
seq2: B6Ng01-259E16.g_69_1191 (reverse)

seq1  GTAATAACCCAATA-CTTTTTCTGAATAATTAAAAAAAAAACATTTATTC  49
      |||||||||  ||| |||||||||| ||  ||||||||||||||||||||
seq2  GTAATAACC--ATACCTTTTTCTGATTA--TAAAAAAAAAACATTTATTC  46

seq1  CATCTAGAAATAG-TTTTCTATATTATTAAACTTTAAATTATTTAAATGT  98
       |||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AATCTAGAAATAGTTTTTCTATATTATTAAACTTTAAA-TATTTAAATGT  95

seq1  AATTTGTTAGTGGCTTTAATTTCAAAACCTATTTTAACATTTTAATAAAT  148
      |  |||||||| ||||| |||||||||| |||||||||||||| ||||||
seq2  A--TTGTTAGT-GCTTT-ATTTCAAAACGTATTTTAACATTTT-ATAAAT  140

seq1  AATAACATTTCATATCCATAATGAGCATTTACCATATATAAAGTATTTAA  198
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  A--TACATTTCATATCCATAATGAGCATTTACCATATATAAAGTATTTAA  188

seq1  TTTCTAAGTGCACCATCTATATTTTCTTAAAAATAATGAACATTAATTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTGCACCATCTATATTTTCTTAAAAATAATGAACATTAATTGC  238

seq1  CACTGTTTCTGTCTTGCACTTTGTCTGTAAGCTTTGATTATATTCACTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTCTGTCTTGCACTTTGTCTGTAAGCTTTGATTATATTCACTTA  288

seq1  ATCCTATGTAGTATCTGTGAGGTATATGCTATTCTTATCCCCTTCATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGTAGTATCTGTGAGGTATATGCTATTCTTATCCCCTTCATTTT  338

seq1  ATGGAAGAAAAAGTAAGATAAATAGAGGTTTTGGTGACAAACAAACAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAAAAGTAAGATAAATAGAGGTTTTGGTGACAAACAAACAGCA  388

seq1  CAATTTTAGCTTATACCGGGATGATCTGGCTTCAGATTCACCATCATAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAGCTTATACCGGGATGATCTGGCTTCAGATTCACCATCATAAA  438

seq1  CATCCTGTTGTCTTACTCTTTCCTAAATGGAAACCTGGAGCTAGTACTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTTGTCTTACTCTTTCCTAAATGGAAACCTGGAGCTAGTACTTA  488

seq1  TGAGAAAACGTCTCATTTGCTCTTTCTAATGTCACCAGCTCATAATCATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACGTCTCATTTGCTCTTTCTAATGTCACCAGCTCATAATCATA  538

seq1  ACATTAAGCCAAGTATTGGCAGAGGAAATCCTGGGAGTTCTGGTTGAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGCCAAGTATTGGCAGAGGAAATCCTGGGAGTTCTGGTTGAAGA  588

seq1  AATCCTGCACATGCCCATGAGTAGAGGAACAGGGCTTACTAGGAAGAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCACATGCCCATGAGTAGAGGAACAGGGCTTACTAGGAAGAGAC  638

seq1  CCAGTGAACCACATTTAACCACAGGCTAACAAATGACACAATCCCCTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAACCACATTTAACCACAGGCTAACAAATGACACAATCCCCTTTT  688

seq1  CTTTCACACATGTTTCACCCCTTCAGCTGTAATGATAGTTAACAAGGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACACATGTTTCACCCCTTCAGCTGTAATGATAGTTAACAAGGCTA  738

seq1  GCTGCAGCCCAGGTAGAAAACTGAGGAAGGTGGTCTGTACTTTGTAGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCCCAGGTAGAAAACTGAGGAAGGTGGTCTGTACTTTGTAGTGA  788

seq1  ATTGTCTAAACATCAGCAAAACCTAACAGAATTCAGTTCCTTTTTGTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAAACATCAGCAAAACCTAACAGAATTCAGTTCCTTTTTGTCAG  838

seq1  ATGTGAATAATAAATATAACCTATATGGCTCTCTGCTCTACTGTGGTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATAATAAATATAACCTATATGGCTCTCTGCTCTACTGTGGTTTT  888

seq1  CATACTCTTTGGTGAAATTGCATTTTTACAGTGGTGCTGGGGCCAGCATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTTTGGTGAAATTGCATTTTTACAGTGGTGCTGGGGCCAGCATG  938

seq1  ATCCTATAAATATTTCTATAATAACAAAATTCCAAAGCTATTATCCTTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATAAATATTTCTATAATAACAAAATTCCAAAGCTATTATCCTTAC  988

seq1  AAATCATGATATTTTGCACATTCAGTACAATATTATGAGACTGGATTGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGATATTTTGCACATTCAGTACAATATTATGAGACTGGATTGCA  1038

seq1  ACAAGACAGAGACAAGGAGGCAATAGTCACTCACATTCTTTTCTCTGTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAGAGACAAGGAGGCAATAGTCACTCACATTCTTTTCTCTGTTC  1088

seq1  TATTTTGAGGATGTGCTTGCTGTAATAAGGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGGATGTGCTTGCTGTAATAAGGAATTC  1123


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