BAC Information

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BAC

Clone NameB6Ng01-259I07
Chromosome2 (Build37)
Map Location 46,212,945 - 46,379,259
singlet/doubletdoublet
Overlap geneLOC383690
Upstream geneLOC100042661, LOC100041337, LOC666604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259I07.bB6Ng01-259I07.g
ACCGA064680GA064681
length1,2311,139
definitionB6Ng01-259I07.b B6Ng01-259I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,378,042 - 46,379,259)(46,212,945 - 46,214,086)
sequence
gaattcaggggaagtaggcagacagcccaccatgaacagttcttctttct
tctttctgacactgagacagtgtggtgtgaagtattgttgaatcacagaa
ggaatcttttgctgcaggtcatataaacattcttagatcaagaagcaagt
ttaggcccaagtcaggagaatgagaacacttaaaaatgaagagaaagaaa
gtatataaaataacgtcctaatgattaagtagctacaacccttcctgatg
ggaaagaacattgggataattgtcttatcaagtggtaaaactattttatt
ctgtcactttctaaggctgaatgtgttttttagtacagggcacattatgg
ccttaaataaacaaaacacagaacctgagccatatagcagaatgggttta
ttaatgttatttggtgatatgatttttaagcaaagaatatatttgttgag
atatgataacttttgtgatagagacaggcagatgcatatcaaatgcacac
atacatcagagggcagataagaaaatattggccttgcttccaatgagata
gaaaaaaaagatagacaattattattcatcagaaatgtggtggaaagaaa
tcagggccaggtatgtggaacctccaggaaacacagttgcaagcaagtaa
acagtaaaattttcatgcacattattgaaatgcacttgtgcttggttaac
taaataactaataaaatatatggcagctttaaaggtaaaatgttgttgat
tattacctacaaataaagggcaattgagcacatctcaaggttaataaaca
ttataattaccgggaaacaccaattttgaaagaaactcttatttctgacc
tgccttaagttcatatgctaaggttcttgcggcctgtatagtatgaacac
acacagacctcccccccacacacatacacattacctaagggtgaatgaca
ctaaacactgctctttacctagctcaagttggtaagggtatcgtgtttgt
aaaatatatccataatatattactgataatattttctacaatgggcttaa
tagtcccttatcagagataatatattgttagagttagaagaaaacaaata
aatttcattttaaaatcattattatacttatttgttatttaatcatatac
ctggtcaagcatgctttggcactgtcatgaaaaatattggaacatgcagt
tattggcaagaattctcttacatgtccctca

gaattcattaaaaagaacataaacaaaagaatgaggtaccaaacactttt
tagtggttaagtcaacaggaatcacacctttctgcttgatgagaacacag
ttaattcttataaaaacaaaaacagtacccccaaaataaatgcatcagac
ctcttaacttcaaatatttgtctaatttctaaccagtcactcaaggacta
atctaatggaatttcttatccttggactagttataaacaagaggttgagt
ttctgttaagagagaaaaaaattcagttttcaaagtataattatttcact
tcatattttatctaatgataagtcaaaggtggtatttgtagctaagcact
taaattaaaagttttaatgtgttcttctgactggggtagacctgcattgg
atgacattttgctcatataatttaggtgaattaaaacatggataagatca
gcaaaagtaaagtcccaaatgttttccaaacaattccagacacaaagaga
tgtttgtgtgacaaaccatgttgaaaataaaagctgtgaccacaggcatc
tggcttcagggtattacatgtaacaggttctagcagttccactaccttaa
atttcatatggttcataaggatgttgatacatgttctctaagaaattcgg
aaatgagaaacataaaaaaaaaaaaagataggaattcagagccctatatt
gtgaaaaggtgaagattgctttagaaacaatagattagttttctgttcca
aaggttataaacagaaatgttcacagacacagttttgacgattttcacta
aatttcatctttaacaattctatatatgtgtataatgtgtcctggttaca
cttactgacactatatcttatttctctccaaggcctctcaatttttccta
ttgagttcaaatacagttgtctgtgagagagtagatttgaagttatctgg
tggttaccaggtggttggctctgatccagattcaggagctagccaatagt
tcatcagatggagtaagggacttatagccttctcgtgattgactaggaag
agcagttataatgtagtccatgcaaggcgtgtgtctctgctgagaatacg
gcttacatgtctgtataatgatcagcaatgacaatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46378042_46379259
seq2: B6Ng01-259I07.b_47_1277 (reverse)

seq1  TGAGGG-CATGTAAGAGA--TCTTTCCATAAACTTCCATGCTCC-ATATA  46
      |||||| |||||||||||  |||| |||  ||| | |||| ||| |||| 
seq2  TGAGGGACATGTAAGAGAATTCTTGCCAATAAC-TGCATGTTCCAATATT  49

seq1  TTTCATG-CA-TGCACAAAGGCATGCTT--ACAG--ATATTAATAAATAA  90
      ||||||| || ||| |||| ||||||||   |||  |||| | |||||||
seq2  TTTCATGACAGTGC-CAAA-GCATGCTTGACCAGGTATATGATTAAATAA  97

seq1  CAAATAAAGTAATAATAATGATTTTTAAATGAA--TTA-TTGTTT--CTC  135
      ||||| |||| |||||||||||||| |||||||  ||| ||||||   ||
seq2  CAAAT-AAGT-ATAATAATGATTTTAAAATGAAATTTATTTGTTTTCTTC  145

seq1  TAACTCTA--CATATATTAT-TCTGAATAAGGACTA-TAAGCCCAATTGT  181
      ||||||||   ||||||||| |||||  | |||||| ||||||| |||||
seq2  TAACTCTAACAATATATTATCTCTGATAAGGGACTATTAAGCCC-ATTGT  194

seq1  AGAAAATATTATCAGT-ATATATTATGGATATATTTTACAAACACGATAC  230
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAAATATTATCAGTAATATATTATGGATATATTTTACAAACACGATAC  244

seq1  CCTTACCAACTTGAGCTAGGTAAAGAGCAGTGTTTAGTGTCATTCACCCC  280
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTACCAACTTGAGCTAGGTAAAGAGCAGTGTTTAGTGTCATTCA-CCC  293

seq1  TTAGGTAATGTGTATGTGTGTGGGGGGGAGGTCTGTGTGTGTTCATACTA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAATGTGTATGTGTGTGGGGGGGAGGTCTGTGTGTGTTCATACTA  343

seq1  TACAGGCCGCAAGAACCTTAGCATATGAACTTAAGGCAGGTCAGAAATAA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCGCAAGAACCTTAGCATATGAACTTAAGGCAGGTCAGAAATAA  393

seq1  GAGTTTCTTTCAAAATTGGTGTTTCCCGGTAATTATAATGTTTATTAACC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTTTCAAAATTGGTGTTTCCCGGTAATTATAATGTTTATTAACC  443

seq1  TTGAGATGTGCTCAATTGCCCTTTATTTGTAGGTAATAATCAACAACATT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGTGCTCAATTGCCCTTTATTTGTAGGTAATAATCAACAACATT  493

seq1  TTACCTTTAAAGCTGCCATATATTTTATTAGTTATTTAGTTAACCAAGCA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTAAAGCTGCCATATATTTTATTAGTTATTTAGTTAACCAAGCA  543

seq1  CAAGTGCATTTCAATAATGTGCATGAAAATTTTACTGTTTACTTGCTTGC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCATTTCAATAATGTGCATGAAAATTTTACTGTTTACTTGCTTGC  593

seq1  AACTGTGTTTCCTGGAGGTTCCACATACCTGGCCCTGATTTCTTTCCACC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTTTCCTGGAGGTTCCACATACCTGGCCCTGATTTCTTTCCACC  643

seq1  ACATTTCTGATGAATAATAATTGTCTATCTTTTTTTTCTATCTCATTGGA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGATGAATAATAATTGTCTATCTTTTTTTTCTATCTCATTGGA  693

seq1  AGCAAGGCCAATATTTTCTTATCTGCCCTCTGATGTATGTGTGCATTTGA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCAATATTTTCTTATCTGCCCTCTGATGTATGTGTGCATTTGA  743

seq1  TATGCATCTGCCTGTCTCTATCACAAAAGTTATCATATCTCAACAAATAT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCTGCCTGTCTCTATCACAAAAGTTATCATATCTCAACAAATAT  793

seq1  ATTCTTTGCTTAAAAATCATATCACCAAATAACATTAATAAACCCATTCT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGCTTAAAAATCATATCACCAAATAACATTAATAAACCCATTCT  843

seq1  GCTATATGGCTCAGGTTCTGTGTTTTGTTTATTTAAGGCCATAATGTGCC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATGGCTCAGGTTCTGTGTTTTGTTTATTTAAGGCCATAATGTGCC  893

seq1  CTGTACTAAAAAACACATTCAGCCTTAGAAAGTGACAGAATAAAATAGTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTAAAAAACACATTCAGCCTTAGAAAGTGACAGAATAAAATAGTT  943

seq1  TTACCACTTGATAAGACAATTATCCCAATGTTCTTTCCCATCAGGAAGGG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTGATAAGACAATTATCCCAATGTTCTTTCCCATCAGGAAGGG  993

seq1  TTGTAGCTACTTAATCATTAGGACGTTATTTTATATACTTTCTTTCTCTT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTACTTAATCATTAGGACGTTATTTTATATACTTTCTTTCTCTT  1043

seq1  CATTTTTAAGTGTTCTCATTCTCCTGACTTGGGCCTAAACTTGCTTCTTG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAGTGTTCTCATTCTCCTGACTTGGGCCTAAACTTGCTTCTTG  1093

seq1  ATCTAAGAATGTTTATATGACCTGCAGCAAAAGATTCCTTCTGTGATTCA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAATGTTTATATGACCTGCAGCAAAAGATTCCTTCTGTGATTCA  1143

seq1  ACAATACTTCACACCACACTGTCTCAGTGTCAGAAAGAAGAAAGAAGAAC  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTTCACACCACACTGTCTCAGTGTCAGAAAGAAGAAAGAAGAAC  1193

seq1  TGTTCATGGTGGGCTGTCTGCCTACTTCCCCTGAATTC  1218
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGGTGGGCTGTCTGCCTACTTCCCCTGAATTC  1231


seq1: chr2_46212945_46214086
seq2: B6Ng01-259I07.g_67_1205

seq1  GAATTCATTAAAAAGAACATAAACAAAAGAATGAGGTACCAAACACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAAAGAACATAAACAAAAGAATGAGGTACCAAACACTTTT  50

seq1  TAGTGGTTAAGTCAACAGGAATCACACCTTTCTGCTTGATGAGAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTAAGTCAACAGGAATCACACCTTTCTGCTTGATGAGAACACAG  100

seq1  TTAATTCTTATAAAAACAAAAACAGTACCCCCAAAATAAATGCATCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTATAAAAACAAAAACAGTACCCCCAAAATAAATGCATCAGAC  150

seq1  CTCTTAACTTCAAATATTTGTCTAATTTCTAACCAGTCACTCAAGGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTTCAAATATTTGTCTAATTTCTAACCAGTCACTCAAGGACTA  200

seq1  ATCTAATGGAATTTCTTATCCTTGGACTAGTTATAAACAAGAGGTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGGAATTTCTTATCCTTGGACTAGTTATAAACAAGAGGTTGAGT  250

seq1  TTCTGTTAAGAGAGAAAAAAATTCAGTTTTCAAAGTATAATTATTTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAAGAGAGAAAAAAATTCAGTTTTCAAAGTATAATTATTTCACT  300

seq1  TCATATTTTATCTAATGATAAGTCAAAGGTGGTATTTGTAGCTAAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTATCTAATGATAAGTCAAAGGTGGTATTTGTAGCTAAGCACT  350

seq1  TAAATTAAAAGTTTTAATGTGTTCTTCTGACTGGGGTAGACCTGCATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAAGTTTTAATGTGTTCTTCTGACTGGGGTAGACCTGCATTGG  400

seq1  ATGACATTTTGCTCATATAATTTAGGTGAATTAAAACATGGATAAGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTTTGCTCATATAATTTAGGTGAATTAAAACATGGATAAGATCA  450

seq1  GCAAAAGTAAAGTCCCAAATGTTTTCCAAACAATTCCAGACACAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTAAAGTCCCAAATGTTTTCCAAACAATTCCAGACACAAAGAGA  500

seq1  TGTTTGTGTGACAAACCATGTTGAAAATAAAAGCTGTGACCACAGGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGACAAACCATGTTGAAAATAAAAGCTGTGACCACAGGCATC  550

seq1  TGGCTTCAGGGTATTACATGTAACAGGTTCTAGCAGTTCCACTACCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAGGGTATTACATGTAACAGGTTCTAGCAGTTCCACTACCTTAA  600

seq1  ATTTCATATGGTTCATAAGGATGTTGATACATGTTCTCTAAGAAATTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATGGTTCATAAGGATGTTGATACATGTTCTCTAAGAAATTCGG  650

seq1  AAATGAGAAACATAAAAAAAAAAAAAGATAGGAATTCAGAGCCCTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAACATAAAAAAAAAAAAAGATAGGAATTCAGAGCCCTATATT  700

seq1  GTGAAAAGGTGAAGATTGCTTTAGAAACAATAGATTAGTTTTCTGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGGTGAAGATTGCTTTAGAAACAATAGATTAGTTTTCTGTTCCA  750

seq1  AAGGTTATAAACAGAAATGTTCACAGACACAGTTTTGACGATTTTCACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATAAACAGAAATGTTCACAGACACAGTTTTGACGATTTTCACTA  800

seq1  AATTTCATCTTTAACAATTCTATATATGTGTATAATGTGTCCTGGTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCTTTAACAATTCTATATATGTGTATAATGTGTCCTGGTTACA  850

seq1  CTTACTGACACTATATCTTATTTCTCTCCAAGGCCTCTCAATTTTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGACACTATATCTTATTTCTCTCCAAGGCCTCTCAATTTTTCCTA  900

seq1  TTGAGTTCAAATACAGTTGTCTGTGAGAGAGTAGATTTGAAGTTATCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCAAATACAGTTGTCTGTGAGAGAGTAGATTTGAAGTTATCTGG  950

seq1  T-GTTACCA-GTGGTTGGCTCTGATCCAGAATTCA-GAGCTAGCCAATAG  997
      | ||||||| ||||||||||||||||||| ||||| ||||||||||||||
seq2  TGGTTACCAGGTGGTTGGCTCTGATCCAG-ATTCAGGAGCTAGCCAATAG  999

seq1  TTCATCAGGATGGAGT-AGGGACTTATAGCCCTCTCGTGATTGACTAGGA  1046
      ||||||| |||||||| |||||||||||||| ||||||||||||||||| 
seq2  TTCATCA-GATGGAGTAAGGGACTTATAGCCTTCTCGTGATTGACTAGG-  1047

seq1  AAGAGCCAGTTAT-ATGTAGGCCCAATGC-AGGCGTGTGTCTCCTGCTGA  1094
      ||||| ||||||| |||||| ||  |||| |||||||||||| |||||||
seq2  AAGAG-CAGTTATAATGTAGTCC--ATGCAAGGCGTGTGTCT-CTGCTGA  1093

seq1  GATTACGGCTACAATGTCTGTATAATGATCAAAGC-ATGACAATTCTAG  1142
      || |||||||   |||||||||||||||||  ||| ||||||| |||||
seq2  GAATACGGCTTACATGTCTGTATAATGATC--AGCAATGACAA-TCTAG  1139


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