BAC Information

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BAC

Clone NameB6Ng01-260G12
Chromosome2 (Build37)
Map Location 107,132,847 - 107,133,908
singlet/doubletsinglet
Overlap geneKcna4
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260G12.b
ACCGA065338
length1,057
definitionB6Ng01-260G12.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccttaaaattttcctcatgggatgttgctgaattaagtaccct
tacatttttctttttcttgggattaaagaagtggggaaatccaaaatttt
tcttcagtttagactccactacttgaatgatcatcaatttcctaatcata
aaatgttgacaacataatcaatcccctttaccccacattggtaaggatcc
atggagatcatggatgctctccggatatcacactgtctatgtacataata
aatatcaacttatatgtcagttatggataacacagcattgaactaagctg
tcatctatctacccactctctaaattcacagactttgcctatgctctctg
aggtggggtaagaccgaacttggaaagatatgtcaatatgacactagaca
atgcctgtgtgaacctgacattctctaactccgtgaaacatccccctgtt
gttgttgttgtttttttttatttctctactccagcttcctgaacactccc
tacaacacacggcctagaaccaaatctcaattcccacttctcttggtaac
catcccctcaccttgaagtgccttcatgttcacctgatatattcttctga
agcatgtggatgcagcatttagagtacacacttatcccaccccaccctgc
atttcgctgtgtcctgttctttcgccctccagttcacgacacattctttt
ttcatatcctaatctctctgcctcatctgctatccatggaaatcttttct
gactttgctctcctaagtccattgactttatctccacagtcaggacttag
gacacttgccccctaactctgaccacctgctgcttccatttactctgacc
aaaagaacttctaacaatacagaagatgagccagagaattggcaatgatg
ataacaggtaaagttctgggcatcctctacttacttttactgggaaccct
tcaggcgcatgagagccacggctctctgatccattactacgattcgaccc
tttagcactgctgctctcacataagatgctgtccataactgaatggctaa
acacagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107132847_107133908
seq2: B6Ng01-260G12.b_42_1098 (reverse)

seq1  CCTGTGTTT-GCCATTTAAGTTATGGGACCAACACTCAAAGTGAAGAGCA  49
      ||||||||| |||| || ||||||||   || ||    | ||| ||||||
seq2  CCTGTGTTTAGCCA-TTCAGTTATGG--ACAGCATCTTATGTG-AGAGCA  46

seq1  GCAGGTGCTCAAGGGTAGAATCCTGTTAATGGCTTCAGAAAGCCATGGCT  99
      ||| ||||| |||||| ||||| |  ||||||  ||||| |||| |||||
seq2  GCA-GTGCTAAAGGGTCGAATCGTAGTAATGG-ATCAGAGAGCCGTGGCT  94

seq1  CTCATGCCGCCGAAGTGTTTCCAGTAATAGAAACTAGAGGATGCCCAGAA  149
      |||||||  | |||| ||| ||||||| || || ||||||||||||||||
seq2  CTCATGCGCCTGAAGGGTTCCCAGTAAAAGTAAGTAGAGGATGCCCAGAA  144

seq1  CTCTACCTGTTATCATCATTGCCAATTCTCTGGCTCATTTTCTGTATTCT  199
      || ||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  CTTTACCTGTTATCATCATTGCCAATTCTCTGGCTCATCTTCTGTATTGT  194

seq1  TAGAAGTCCTCTTGGCCAGAGTAAATGGAAGAAGCAGGTGGTCAGAGTTA  249
      ||||||| || |||| ||||||||||||||| ||||||||||||||||||
seq2  TAGAAGTTCTTTTGGTCAGAGTAAATGGAAGCAGCAGGTGGTCAGAGTTA  244

seq1  -GGGGCAAGTTTCCTAAGTCCTGGCTGAGGAGATAAAGTCAATGGACTTA  298
       ||||||||| |||||||||||| ||| ||||||||||||||||||||||
seq2  GGGGGCAAGTGTCCTAAGTCCTGACTGTGGAGATAAAGTCAATGGACTTA  294

seq1  GGAGAGCAAAGTAAGAAAAGAGGGCCAGGGATAGCAGATGAGGCAGAGAG  348
      |||||||||||| ||||||||   ||| ||||||||||||||||||||||
seq2  GGAGAGCAAAGTCAGAAAAGATTTCCATGGATAGCAGATGAGGCAGAGAG  344

seq1  ATTGGGATATGAAAAAAAAATGTGTGGTGAACTGGAGGGCGAAAGAACAG  398
      ||| ||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  ATTAGGATATGAAAAAAGAATGTGTCGTGAACTGGAGGGCGAAAGAACAG  394

seq1  GATACAGTGAAATGGGGGGTGGGGTGGGTAAAGTGTGTACTCTAAATGCT  448
      || |||| ||||||  ||||||||||||  ||||||||||||||||||||
seq2  GACACAGCGAAATGCAGGGTGGGGTGGGATAAGTGTGTACTCTAAATGCT  444

seq1  GCATCCACATGCTTCAGAAGACTATATCAGGTGAACATGACGGCACTTCA  498
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  GCATCCACATGCTTCAGAAGAATATATCAGGTGAACATGAAGGCACTTCA  494

seq1  AGGAGAGGGGATGGTTACCAAGAGAAGTGGGAACTGAGATCTGCTTCTAG  548
      ||| ||||||||||||||||||||||||||||| |||||| || ||||||
seq2  AGGTGAGGGGATGGTTACCAAGAGAAGTGGGAATTGAGATTTGGTTCTAG  544

seq1  GCCGTGGGTGGTAGGGAGTGTTCAGGAAGCTGGAGTAGAGAAATAAAAAA  598
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTGTTGTAGGGAGTGTTCAGGAAGCTGGAGTAGAGAAATAAAAAA  594

seq1  AAACAACAACAACAACAGGGGCTTGTTTCATGGAGTCAGAGAATGCCAGG  648
      |||||||||||||||||||||  ||||||| ||||| |||||||| ||||
seq2  AAACAACAACAACAACAGGGGGATGTTTCACGGAGTTAGAGAATGTCAGG  644

seq1  TTCACACAGGCATTGTCTAGTGTCATAGTGACATATCTGTCCAAGTTCTG  698
      ||||||||||||||||||||||||||| |||||||||| ||||||||| |
seq2  TTCACACAGGCATTGTCTAGTGTCATATTGACATATCTTTCCAAGTTCGG  694

seq1  TCTTACCCCACCTCAGAGAGCATCGGCAAAGACTGTGAATTTAGAGAGTG  748
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TCTTACCCCACCTCAGAGAGCATAGGCAAAGTCTGTGAATTTAGAGAGTG  744

seq1  GGTAGATAGATGACAGCCTAGTTTAATGCTGTGTTATCCATAACTGACAT  798
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  GGTAGATAGATGACAGCTTAGTTCAATGCTGTGTTATCCATAACTGACAT  794

seq1  ATCTGTTGCTATTTACTATGTACATAGACAGTGTGCTATCCTGAGAGCAT  848
      ||  |||| |||||| ||||||||||||||||||| ||||| ||||||||
seq2  ATAAGTTGATATTTATTATGTACATAGACAGTGTGATATCCGGAGAGCAT  844

seq1  CCATGATCTCCATGGATCCTTACCAATGTGGGGTAAAGGGGATTGATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCTCCATGGATCCTTACCAATGTGGGGTAAAGGGGATTGATTAT  894

seq1  GTTGTCTACATTTTATGATTAGGAAATTGATGATCATTCAAGTAGTGGAG  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAACATTTTATGATTAGGAAATTGATGATCATTCAAGTAGTGGAG  944

seq1  TCTAAACTGAAGAAAAATGTTTTATTTCCCCACTTCTTTAATCCCAAGAA  998
      |||||||||||||||||| ||  |||||||||||||||||||||||||||
seq2  TCTAAACTGAAGAAAAATTTTGGATTTCCCCACTTCTTTAATCCCAAGAA  994

seq1  AAAGAAAAATGTAAGGGTACTTAATTCAGCAACATTCCATGAGTGAAAAT  1048
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  AAAGAAAAATGTAAGGGTACTTAATTCAGCAACATCCCATGAG-GAAAAT  1043

seq1  TTTAAGGAGAATTC  1062
      ||||||||||||||
seq2  TTTAAGGAGAATTC  1057