BAC Information

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BAC

Clone NameB6Ng01-260I19
Chromosome2 (Build37)
Map Location 86,951,559 - 87,079,279
singlet/doubletdoublet
Overlap geneLOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767
Upstream geneLOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259
Downstream geneOlfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260I19.bB6Ng01-260I19.g
ACCGA065442GA065443
length1,1311,126
definitionB6Ng01-260I19.b B6Ng01-260I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,078,142 - 87,079,279)(86,951,559 - 86,952,696)
sequence
gaattccaagttcagttgcaaattagcaatgatcaaactcagactctgac
ctcctggtgtgggggaggtgactttgagaatcagcagataagccaaaaat
ttctctgagagtggacgctgtgctccaaattaactttttttttttggcta
aaaaggatttttagccatcaagcaggttagaatcatacttactagaagat
tcaggatctgtgtccacttgatgatccagtctttcaggtagccatagcac
tccatcttctttttgtgaaaaaaaaaaaaaacacatatagaacctcttcc
ccagattataacggggtctggaccattccacatattaattaatgggtccc
accatttaaccatggcataagaactggaagtaactggatgccagtggcga
tccactgaagactgacctttaatatcagtttgcaaaaaaattaagttatg
aaaaccataaagcttttttttttaagtaattaagggtagttaaactattt
aaagaatacaaagtccaaagagcttgaggtaaggtcttcagaaaggcgtc
ccagggcaaagagtggcccagagggaaactttagagtttgaaagacagag
ggaacacatgacatcagagtgcaggctgaaatttcacttagaagataata
tttctgaaggtatttgtaagagcaacgatagcacccacacagtggggttg
tgggggaagaaactgcctgtaaaaatgtgaatctttacattaaatgagac
aagtgctgaacgtaactatgttaactaggatagtatgtctactatggata
tcagatggttaaaggtggtcctaaagaaaacaaaaacagcattgacctca
gtctacccagcccagagttcgtctgtctgtcctgtgcactatgaagagtg
aggcgtgaggtatttatcattattaatgctgcatcaaactagatgatttc
accacgtagtttattcactataaaagacatctatgtttttacttatggac
aagctttaaaagatgtcattttagttcaacacaatacaacagttatcaat
ctcaataaatgctgcatgctccacctgcctgctatattggcgtgcacagt
ctcgatcctcgagaactccgagaacaccgag
gaattccatgtcaaagatctgtttttccccatgtgaaagtattcatggat
cctagattttgagatttaaaaagtactaggaattgtcattcaatctttac
tagttaagatatccaaagaaagactgatcaaaaatttaatgatcaagtaa
tttaatgagatatgtttgtgtttaaaaatagtgatccaagaaaataacac
accatgttcaaaaccaacagtagagtgttctgtgacagaaggagttctaa
atattcctaaatgaagagaaaatcaggagtcaatgttgaggattaaaggt
attattattattattattattattattattattattattattactaatca
ttgaaatgtgaccacagtgagattgggaaaacatttgcccaagatatcaa
agatcagaaattccatacttcaagcttacaaaagtattttattctcaacc
atctcttttaccattttttatttttactacttataagaataactttcata
aggttgatgtttttactcaaatcaactcctgtattgaactgtatggcaat
gtaaatttatctgtgttacctggggactgtgttaacattactaaacactt
tattttacaatttggttaacatgtcctttatttacggtctcatgcaagga
acttgagacttcagtaaaataatttggtaccacactttactagtcaggat
atactaagactttcgtatagttctatattgatatacattgatgcagtaac
attgaaatgatcaccacaacacttaaatgtaggaatgtaccttaatccca
gcctatattctattgtcagaaactttgtgaagaatagtgaatgcaatttc
tcttaatgctaaggacaagaaaagatgcatttcagatatcagtgattttt
aaaaattatttatttgtctgaaattctattgtactaaatcattcctcctt
ccctttcctccctctaggcccttttatataccatctgctctcgttcaaat
catggcacattcacctatgtgttacatatgtagctatatacatatatctt
aaacatatattcatttcctcaggtctatataacttcagaattccctcctt
gtccactgtgttctctcttgccttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_87078142_87079279
seq2: B6Ng01-260I19.b_48_1178 (reverse)

seq1  ---------CTCGGTGTCTTCGAGGATCTGAGGACTTGTGCACGCC-ATA  40
               ||||| ||  ||||||||| || ||| |||||||||| |||
seq2  CTCGGTGTTCTCGGAGTTCTCGAGGATC-GA-GAC-TGTGCACGCCAATA  47

seq1  TAGCAGCCAAGGTCTGAGCCATGGCAGCATTTTTATTTGAGATTTTGATA  90
      |||||| | ||||  ||| ||| |||||||||    ||||||  ||||||
seq2  TAGCAGGC-AGGT-GGAG-CAT-GCAGCATTT---ATTGAGA--TTGATA  88

seq1  ACTGTTTGTA-TGTGTTGAAAACTAAAATGACATCCTTTTAAAGCTTGTC  139
      |||| ||||| |||||||  |||||||||||||| |||||||||||||||
seq2  ACTG-TTGTATTGTGTTG--AACTAAAATGACAT-CTTTTAAAGCTTGTC  134

seq1  CATAAGTAAAAACATAGATGTCTTTTATAGTGGAATAAACTACGTGGTGA  189
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATAAGTAAAAACATAGATGTCTTTTATAGT-GAATAAACTACGTGGTGA  183

seq1  AATCATCTAGTTTGATGCAGCATTTAATAATGATAAATACCTCACGCCTC  239
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATCATCTAGTTTGATGCAGCA-TTAATAATGATAAATACCTCACGCCTC  232

seq1  ACTCTTCATAGTGCACAGGACAGACAGACGAACTCTGGGCTGGGTAGACT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCATAGTGCACAGGACAGACAGACGAACTCTGGGCTGGGTAGACT  282

seq1  GAGGTCAATGCTGTTTTTGTTTTCTTTAGGACCACCTTTAACCATCTGAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAATGCTGTTTTTGTTTTCTTTAGGACCACCTTTAACCATCTGAT  332

seq1  ATCCATAGTAGACATACTATCCTAGTTAACATAGTTACGTTCAGCACTTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAGTAGACATACTATCCTAGTTAACATAGTTACGTTCAGCACTTG  382

seq1  TCTCATTTAATGTAAAGATTCACATTTTTACAGGCAGTTTCTTCCCCCAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTAATGTAAAGATTCACATTTTTACAGGCAGTTTCTTCCCCCAC  432

seq1  AACCCCACTGTGTGGGTGCTATCGTTGCTCTTACAAATACCTTCAGAAAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACTGTGTGGGTGCTATCGTTGCTCTTACAAATACCTTCAGAAAT  482

seq1  ATTATCTTCTAAGTGAAATTTCAGCCTGCACTCTGATGTCATGTGTTCCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCTAAGTGAAATTTCAGCCTGCACTCTGATGTCATGTGTTCCC  532

seq1  TCTGTCTTTCAAACTCTAAAGTTTCCCTCTGGGCCACTCTTTGCCCTGGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCAAACTCTAAAGTTTCCCTCTGGGCCACTCTTTGCCCTGGG  582

seq1  ACGCCTTTCTGAAGACCTTACCTCAAGCTCTTTGGACTTTGTATTCTTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTCTGAAGACCTTACCTCAAGCTCTTTGGACTTTGTATTCTTTA  632

seq1  AATAGTTTAACTACCCTTAATTACTTAAAAAAAAAAGCTTTATGGTTTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTAACTACCCTTAATTACTTAAAAAAAAAAGCTTTATGGTTTTC  682

seq1  ATAACTTAATTTTTTTGCAAACTGATATTAAAGGTCAGTCTTCAGTGGAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAATTTTTTTGCAAACTGATATTAAAGGTCAGTCTTCAGTGGAT  732

seq1  CGCCACTGGCATCCAGTTACTTCCAGTTCTTATGCCATGGTTAAATGGTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTGGCATCCAGTTACTTCCAGTTCTTATGCCATGGTTAAATGGTG  782

seq1  GGACCCATTAATTAATATGTGGAATGGTCCAGACCCCGTTATAATCTGGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCATTAATTAATATGTGGAATGGTCCAGACCCCGTTATAATCTGGG  832

seq1  GAAGAGGTTCTATATGTGTTTTTTTTTTTTTTCACAAAAAGAAGATGGAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTTCTATATGTGTTTTTTTTTTTTTTCACAAAAAGAAGATGGAG  882

seq1  TGCTATGGCTACCTGAAAGACTGGATCATCAAGTGGACACAGATCCTGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGCTACCTGAAAGACTGGATCATCAAGTGGACACAGATCCTGAA  932

seq1  TCTTCTAGTAAGTATGATTCTAACCTGCTTGATGGCTAAAAATCCTTTTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGTAAGTATGATTCTAACCTGCTTGATGGCTAAAAATCCTTTTT  982

seq1  AGCCAAAAAAAAAAAGTTAATTTGGAGCACAGCGTCCACTCTCAGAGAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAAAAAAAAGTTAATTTGGAGCACAGCGTCCACTCTCAGAGAAA  1032

seq1  TTTTTGGCTTATCTGCTGATTCTCAAAGTCACCTCCCCCACACCAGGAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCTTATCTGCTGATTCTCAAAGTCACCTCCCCCACACCAGGAGG  1082

seq1  TCAGAGTCTGAGTTTGATCATTGCTAATTTGCAACTGAACTTGGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCTGAGTTTGATCATTGCTAATTTGCAACTGAACTTGGAATTC  1131

seq1: chr2_86951559_86952696
seq2: B6Ng01-260I19.g_64_1189

seq1  GAATTCCATGTCAAAGATCTGTTTTTCCCCATGTGAAAGTATTCATGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCAAAGATCTGTTTTTCCCCATGTGAAAGTATTCATGGAT  50

seq1  CCTAGATTTTGAGATTTAAAAAGTACTAGGAATTGTCATTCAATCTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTTTGAGATTTAAAAAGTACTAGGAATTGTCATTCAATCTTTAC  100

seq1  TAGTTAAGATATCCAAAGAAAGACTGATCAAAAATTTAATGATCAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGATATCCAAAGAAAGACTGATCAAAAATTTAATGATCAAGTAA  150

seq1  TTTAATGAGATATGTTTGTGTTTAAAAATAGTGATCCAAGAAAATAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAGATATGTTTGTGTTTAAAAATAGTGATCCAAGAAAATAACAC  200

seq1  ACCATGTTCAAAACCAACAGTAGAGTGTTCTGTGACAGAAGGAGTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTCAAAACCAACAGTAGAGTGTTCTGTGACAGAAGGAGTTCTAA  250

seq1  ATATTCCTAAATGAAGAGAAAATCAGGAGTCAATGTTGAGGATTAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTAAATGAAGAGAAAATCAGGAGTCAATGTTGAGGATTAAAGGT  300

seq1  ATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTAATCA  350

seq1  TTGAAATGTGACCACAGTGAGATTGGGAAAACATTTGCCCAAGATATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTGACCACAGTGAGATTGGGAAAACATTTGCCCAAGATATCAA  400

seq1  AGATCAGAAATTCCATACTTCAAGCTTACAAAAGTATTTTATTCTCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAAATTCCATACTTCAAGCTTACAAAAGTATTTTATTCTCAACC  450

seq1  ATCTCTTTTACCATTTTTTATTTTTACTACTTATAAGAATAACTTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTTACCATTTTTTATTTTTACTACTTATAAGAATAACTTTCATA  500

seq1  AGGTTGATGTTTTTACTCAAATCAACTCCTGTATTGAACTGTATGGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATGTTTTTACTCAAATCAACTCCTGTATTGAACTGTATGGCAAT  550

seq1  GTAAATTTATCTGTGTTACCTGGGGACTGTGTTAACATTACTAAACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTATCTGTGTTACCTGGGGACTGTGTTAACATTACTAAACACTT  600

seq1  TATTTTACAATTTGGTTAACATGTCCTTTATTTACGGTCTCATGCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACAATTTGGTTAACATGTCCTTTATTTACGGTCTCATGCAAGGA  650

seq1  ACTTGAGACTTCAGTAAAATAATTTGGTACCACACTTTACTAGTCAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGACTTCAGTAAAATAATTTGGTACCACACTTTACTAGTCAGGAT  700

seq1  ATACTAAGACTTTCGTATAGTTCTATATTGATATACATTGATGCAGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGACTTTCGTATAGTTCTATATTGATATACATTGATGCAGTAAC  750

seq1  ATTGAAATGATCACCACAACACTTAAATGTAGGAATGTACCTTAATCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGATCACCACAACACTTAAATGTAGGAATGTACCTTAATCCCA  800

seq1  GCCTATATTCTATTGTCAGAAACTTTGTGAAGAATAGTGAATGCAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATATTCTATTGTCAGAAACTTTGTGAAGAATAGTGAATGCAATTTC  850

seq1  TCTTAATGCTAAGGACAAGAAAAGATGCATTTCAGATATCAGTGATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGCTAAGGACAAGAAAAGATGCATTTCAGATATCAGTGATTTTT  900

seq1  AAAAATTATTTATTTGTCTGAAATTCTATTGTACTAAAATCATTCCTCCC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAAATTATTTATTTGTCTGAAATTCTATTGTACT-AAATCATTCCT-CC  948

seq1  TTCCCTTTCCTCCCTCTAGGCCCTTTTATATACCCATCTTGCTCTCGTTC  1000
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TTCCCTTTCCTCCCTCTAGGCCCTTTTATATA-CCATC-TGCTCTCGTTC  996

seq1  AAATCCATGGCCACATTTCCACCTATTGTTGTTACATATGTAGGCCTATA  1050
      |||| ||||| ||||||  |||||||   ||||||||||||||  |||||
seq2  AAAT-CATGG-CACATT--CACCTAT--GTGTTACATATGTAG--CTATA  1038

seq1  TACATATATTCCTAAACATATAAATCCAATTTCCTCA-GTCTATATAACT  1099
      |||||||| || |||||||||  || | ||||||||| ||||||||||||
seq2  TACATATA-TCTTAAACATAT--ATTC-ATTTCCTCAGGTCTATATAACT  1084

seq1  TCAGAGTCCCTCTCTTGGTCACCTG---TCTCTCTTG-CTTAA  1138
      ||||| | || ||| | |||  |||   ||||||||| |||||
seq2  TCAGAATTCC-CTCCTTGTCCACTGTGTTCTCTCTTGCCTTAA  1126