BAC Information

Click to search

BAC

Clone NameB6Ng01-260M08
Chromosome2 (Build37)
Map Location 129,693,394 - 129,833,734
singlet/doubletdoublet
Overlap genenone
Upstream gene1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260M08.bB6Ng01-260M08.g
ACCGA065611GA065612
length1,1291,099
definitionB6Ng01-260M08.b B6Ng01-260M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,693,394 - 129,694,526)(129,832,621 - 129,833,734)
sequence
gaattccatttagaatgtaaaatgctctatgaagtgtttttctctcaagt
gagaacacataattgatttttttttttttttaaaaaaagaaggcaacctt
tctggactctggaaaatgctttcgggcccatcttatttttctgcgcacag
aggcaattaccccagggtggcactcggaaaggggactaacttattttaca
caacaaatgttttactgttacatcttccttatggcacgagggattattga
atcagcttgttttatgtcctgcggagaaaaactaaacccagccctgaaca
gtggactccctgctctgactccaagtgagagccactgtgctgtgtcccca
ggtttccctgtctgctcatcatagctcctgcctctgaatcctcgctggtg
agcacctccgcccatgttcttcttcttcaagatataattattttcatctt
aatgtgtatgaatattttgctggcgtgcatgtatgtgtaccataagcatg
caatgcctgcatcagtgagaagagggcatcaggtcccctggaactggagt
tacagacggttgagccaccgtgtgggtgctggaaacccaacccaagtcct
ctgtgaaccacatgcagctgtcatgttcatcattgtgccctttggtggta
ttttctccctgtgacttgatcactgattggcgacctgcttgaccaacagt
gatcatgatgaacataactcgacagagacttagcaatgggcgctctttag
actgtggtgccagagtctgagctatcctgcgggagggatggaggtaagtc
atcccagttgggctggataggtaaacagcggccatcctagaccagcttgt
ttcagtgagttggtctggctcagaacttctcagcagagccaaattggaaa
ttatttgatgttttaacccactaaaggcttgggggcgtttagttccatag
aagcagtcgtctgatacattgtcttctcattctttttacctataggtaca
tggattcattgggtcaaagagagttttgggggaggattattggagatccc
aggaagctggggaggcagttagaatcaagttaatagttccagaattgtca
gtctgacctagaaataacctctcttccag
gaattctaagtgatgtctttacttgaacagtcagacaggaagcaacagaa
aattttgaagatgataaactaatagccaaaggggtgtgtatcacttgtag
tcaacttccagaaagagtgatagatactgatgacggcaataagtgaggtc
agcttattaaagaagatgcatttcagataaaccaggaaggagaagatcaa
ggaaaggcatgcacggtgacagagagtcttcattccatgggctgcacatg
gctttctgtggggcacacagtgcttgcagtcagtagggaagactggaaag
gctggcctccacttttcatcccaatggtcaccctaagttcttagacctag
aagagaaatcggtgggtgggtctcaaccccctacaagactctgttggaag
gcttctctgccaaactcttggccattcatgagcacaggtgggaaaaaaca
aacgcagaaaagagactacaacccaccgtctggttcctgatggtacacct
gcagggccaagttgtagccagagagaacaccaggaaatgatggtgtcaaa
ggacagcttgctggaggatgtagcttgtcaagaagaaaacacaccagagg
ccacaaagcccagctttttatttttctgataatggaccaaggcctacaga
taaatgcttagcctaagatctcagaatggtgacttgaatcacagagcaga
agagagtgcaggggctcttccttccctttggagaacccctttcaccaccc
aggctggcgcaccctggatttccaactgggagaactctgtttctgccaat
ttagtcatttcctgcttttcagttgagaaactcccttgacaccttcttgt
atgtagtgtgatgaggcacatttttataaattcattcttttgacaacgtc
atgcatgtatatgaagcaatccaatggctcccaccccacttttgcttagc
aattcgcaccctctcacctctccctcttctcaacaacactgcccacagtg
tgtctccttgtttgtctgtaaccattgagtaactagtcagtctgtgtgac
catggatttgtagtgatcattttggattgttcttcagcaagttaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129693394_129694526
seq2: B6Ng01-260M08.b_44_1172

seq1  GAATTCCATTTAGAATGTAAAATGCTCTATGAAGTGTTTTTCTCTCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGAATGTAAAATGCTCTATGAAGTGTTTTTCTCTCAAGT  50

seq1  GAGAACACATAATTGATTTTTTTTTTTTTTTAAAAAAAGAAGGCAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACATAATTGATTTTTTTTTTTTTTTAAAAAAAGAAGGCAACCTT  100

seq1  TCTGGACTCTGGAAAATGCTTTCGGGCCCATCTTATTTTTCTGCGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCTGGAAAATGCTTTCGGGCCCATCTTATTTTTCTGCGCACAG  150

seq1  AGGCAATTACCCCAGGGTGGCACTCGGAAAGGGGACTAACTTATTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTACCCCAGGGTGGCACTCGGAAAGGGGACTAACTTATTTTACA  200

seq1  CAACAAATGTTTTACTGTTACATCTTCCTTATGGCACGAGGGATTATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGTTTTACTGTTACATCTTCCTTATGGCACGAGGGATTATTGA  250

seq1  ATCAGCTTGTTTTATGTCCTGCGGAGAAAAACTAAACCCAGCCCTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTGTTTTATGTCCTGCGGAGAAAAACTAAACCCAGCCCTGAACA  300

seq1  GTGGACTCCCTGCTCTGACTCCAAGTGAGAGCCACTGTGCTGTGTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTCCCTGCTCTGACTCCAAGTGAGAGCCACTGTGCTGTGTCCCCA  350

seq1  GGTTTCCCTGTCTGCTCATCATAGCTCCTGCCTCTGAATCCTCGCTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCTGTCTGCTCATCATAGCTCCTGCCTCTGAATCCTCGCTGGTG  400

seq1  AGCACCTCCGCCCATGTTCTTCTTCTTCAAGATATAATTATTTTCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCCGCCCATGTTCTTCTTCTTCAAGATATAATTATTTTCATCTT  450

seq1  AATGTGTATGAATATTTTGCTGGCGTGCATGTATGTGTACCATAAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATGAATATTTTGCTGGCGTGCATGTATGTGTACCATAAGCATG  500

seq1  CAATGCCTGCATCAGTGAGAAGAGGGCATCAGGTCCCCTGGAACTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTGCATCAGTGAGAAGAGGGCATCAGGTCCCCTGGAACTGGAGT  550

seq1  TACAGACGGTTGAGCCACCGTGTGGGTGCTGGAAACCCAACCCAAGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACGGTTGAGCCACCGTGTGGGTGCTGGAAACCCAACCCAAGTCCT  600

seq1  CTGTGAACCACATGCAGCTGTCATGTTCATCATTGTGCCCTTTGGTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACCACATGCAGCTGTCATGTTCATCATTGTGCCCTTTGGTGGTA  650

seq1  TTTTCTCCCTGTGACTTGATCACTGATTGGCGACCTGCTTGACCAACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTGTGACTTGATCACTGATTGGCGACCTGCTTGACCAACAGT  700

seq1  GATCATGATGAACATAACTCGACAGAGACTTAGCAATGGGCGCTCTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGATGAACATAACTCGACAGAGACTTAGCAATGGGCGCTCTTTAG  750

seq1  ACTGTGGTGCCAGAGTCTGAGCTATCCTGCGGGAGGGATGGAGGTAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTGCCAGAGTCTGAGCTATCCTGCGGGAGGGATGGAGGTAAGTC  800

seq1  ATCCCAGTTGGGCTGGATAGGTAAACAGCGGCCATCCTAGACCAGCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTTGGGCTGGATAGGTAAACAGCGGCCATCCTAGACCAGCTTGT  850

seq1  TTCAGGTGAGTTGGTCTGGCTCAGAACTTCTCAGCAGAGCCAAATTGGAA  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCA-GTGAGTTGGTCTGGCTCAGAACTTCTCAGCAGAGCCAAATTGGAA  899

seq1  ATTATTTGATGTTTTAACCCACT-AAGGCTTGGGGGCGTTTAGTTCCATA  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTATTTGATGTTTTAACCCACTAAAGGCTTGGGGGCGTTTAGTTCCATA  949

seq1  GAAGCAGTCGTCTGATACATTGTC-TCTCATTC-TTTTACCTATTAGGTA  997
      |||||||||||||||||||||||| |||||||| ||||||||| ||||||
seq2  GAAGCAGTCGTCTGATACATTGTCTTCTCATTCTTTTTACCTA-TAGGTA  998

seq1  CATGGATTCA-TGGGTCAAAGAGGAGTTTTGGGG--AGATTATTGGAGAT  1044
      |||||||||| ||||||||||| |||||||||||   |||||||||||||
seq2  CATGGATTCATTGGGTCAAAGA-GAGTTTTGGGGGAGGATTATTGGAGAT  1047

seq1  CCCAGGAAGGCTGGGGAGGCAGGTTTAGAATCAGAGTAATAGTTCCCAGA  1094
      |||||||| |||||||||||||  |||||||||   ||||||||||   |
seq2  CCCAGGAA-GCTGGGGAGGCAG--TTAGAATCAAGTTAATAGTTCCAGAA  1094

seq1  TTGTCAGGGTCTGACCTAGGAAAATAACCTCTCTCCCAG  1133
      ||||||  |||||||||||  ||||||||||||| ||||
seq2  TTGTCA--GTCTGACCTAG--AAATAACCTCTCTTCCAG  1129

seq1: chr2_129832621_129833734
seq2: B6Ng01-260M08.g_66_1164 (reverse)

seq1  TTCCTTTACTTGCTGAAGACATATCAAAATTGGATCACTACAAATCCATG  50
      |||||| ||||||||||||   ||| ||| | ||||||||||||||||||
seq2  TTCCTTAACTTGCTGAAGAACAATCCAAAAT-GATCACTACAAATCCATG  49

seq1  GTCACACAGACTGACTTAGTTAAACTCAATGGGTTACAGAACAAAACAAG  100
      ||||||||||||||| |||||  ||||||| |||||||||   |||||||
seq2  GTCACACAGACTGAC-TAGTT--ACTCAAT-GGTTACAGA--CAAACAAG  93

seq1  GAGACACAACTGTGGGGCAGTGTGTTGGAGGAAGGAGGGAGGAGGTGGAG  150
      ||||||| ||||| |||||||||  | |||  | |||||| ||||| |||
seq2  GAGACAC-ACTGT-GGGCAGTGTTGTTGAG--AAGAGGGA-GAGGT-GAG  137

seq1  AGGGTGCGGAATTGCTAAGCAAAGGTGGGGTGGGAGCCATTGGATTGCTT  200
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGGTGC-GAATTGCTAAGCAAAAGTGGGGTGGGAGCCATTGGATTGCTT  186

seq1  CATATACATGCATGACGTTGTCAAAAGAATGAATTTAATAAAAATGTGCC  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATATACATGCATGACGTTGTCAAAAGAATGAATTT-ATAAAAATGTGCC  235

seq1  TCATCACACTACATACAAGAAGGTGTCAAGGGAGTTTCTCAACTGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACACTACATACAAGAAGGTGTCAAGGGAGTTTCTCAACTGAAAAG  285

seq1  CAGGAAATGACTAAATTGGCAGAAACAGAGTTCTCCCAGTTGGAAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATGACTAAATTGGCAGAAACAGAGTTCTCCCAGTTGGAAATCCA  335

seq1  GGGTGCGCCAGCCTGGGTGGTGAAAGGGGTTCTCCAAAGGGAAGGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGCCAGCCTGGGTGGTGAAAGGGGTTCTCCAAAGGGAAGGAAGAG  385

seq1  CCCCTGCACTCTCTTCTGCTCTGTGATTCAAGTCACCATTCTGAGATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCACTCTCTTCTGCTCTGTGATTCAAGTCACCATTCTGAGATCTT  435

seq1  AGGCTAAGCATTTATCTGTAGGCCTTGGTCCATTATCAGAAAAATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGCATTTATCTGTAGGCCTTGGTCCATTATCAGAAAAATAAAAA  485

seq1  GCTGGGCTTTGTGGCCTCTGGTGTGTTTTCTTCTTGACAAGCTACATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTTTGTGGCCTCTGGTGTGTTTTCTTCTTGACAAGCTACATCCT  535

seq1  CCAGCAAGCTGTCCTTTGACACCATCATTTCCTGGTGTTCTCTCTGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGCTGTCCTTTGACACCATCATTTCCTGGTGTTCTCTCTGGCTA  585

seq1  CAACTTGGCCCTGCAGGTGTACCATCAGGAACCAGACGGTGGGTTGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGCCCTGCAGGTGTACCATCAGGAACCAGACGGTGGGTTGTAGT  635

seq1  CTCTTTTCTGCGTTTGTTTTTTCCCACCTGTGCTCATGAATGGCCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTGCGTTTGTTTTTTCCCACCTGTGCTCATGAATGGCCAAGAG  685

seq1  TTTGGCAGAGAAGCCTTCCAACAGAGTCTTGTAGGGGGTTGAGACCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGAGAAGCCTTCCAACAGAGTCTTGTAGGGGGTTGAGACCCACC  735

seq1  CACCGATTTCTCTTCTAGGTCTAAGAACTTAGGGTGACCATTGGGATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGATTTCTCTTCTAGGTCTAAGAACTTAGGGTGACCATTGGGATGAA  785

seq1  AAGTGGAGGCCAGCCTTTCCAGTCTTCCCTACTGACTGCAAGCACTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGGCCAGCCTTTCCAGTCTTCCCTACTGACTGCAAGCACTGTGT  835

seq1  GCCCCACAGAAAGCCATGTGCAGCCCATGGAATGAAGACTCTCTGTCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAGAAAGCCATGTGCAGCCCATGGAATGAAGACTCTCTGTCACC  885

seq1  GTGCATGCCTTTCCTTGATCTTCTCCTTCCTGGTTTATCTGAAATGCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCCTTTCCTTGATCTTCTCCTTCCTGGTTTATCTGAAATGCATC  935

seq1  TTCTTTAATAAGCTGACCTCACTTATTGCCGTCATCAGTATCTATCACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATAAGCTGACCTCACTTATTGCCGTCATCAGTATCTATCACTC  985

seq1  TTTCTGGAAGTTGACTACAAGTGATACACACCCCTTTGGCTATTAGTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAAGTTGACTACAAGTGATACACACCCCTTTGGCTATTAGTTTA  1035

seq1  TCATCTTCAAAATTTTCTGTTGCTTCCTGTCTGACTGTTCAAGTAAAGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCAAAATTTTCTGTTGCTTCCTGTCTGACTGTTCAAGTAAAGAC  1085

seq1  ATCACTTAGAATTC  1114
      ||||||||||||||
seq2  ATCACTTAGAATTC  1099